data_1D5J # _model_server_result.job_id 3ao6nkzKb6OMqnJEjM4phQ _model_server_result.datetime_utc '2024-11-14 06:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 1D5J # _exptl.entry_id 1D5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D5J _cell.length_a 37.78 _cell.length_b 78.54 _cell.length_c 105.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 A OD1 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc3 A O ASP 59 A ASP 141 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 A OD2 ASP 71 A ASP 153 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 A OD1 ASP 76 A ASP 158 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 A O GLY 77 A GLY 159 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc8 A O GLY 79 A GLY 161 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 A O VAL 81 A VAL 163 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 A NE2 HIS 84 A HIS 166 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc11 A O GLY 91 A GLY 173 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc12 A O ASN 93 A ASN 175 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc13 A OD1 ASP 95 A ASP 177 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc14 A ND1 HIS 97 A HIS 179 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc15 A OD2 ASP 99 A ASP 181 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc16 A O ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc17 A OD1 ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc19 A O GLU 102 A GLU 184 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc20 A NE2 HIS 119 A HIS 201 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc21 A NE2 HIS 123 A HIS 205 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc22 A NE2 HIS 129 A HIS 211 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc23 C ZN ZN . A ZN 301 1_555 H OA MM3 . A MM3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc24 C ZN ZN . A ZN 301 1_555 H OB MM3 . A MM3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc25 F CA CA . A CA 304 1_555 O O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc26 G CA CA . A CA 305 1_555 O O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc27 G CA CA . A CA 305 1_555 O O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc28 P O HOH . B HOH 14 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc29 P O HOH . B HOH 16 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc30 P O HOH . B HOH 21 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc31 B OD2 ASP 25 B ASP 607 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc32 B OD1 ASP 25 B ASP 607 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc33 B O ASP 59 B ASP 641 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc34 B NE2 HIS 69 B HIS 651 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc35 B OD2 ASP 71 B ASP 653 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc36 B OD1 ASP 76 B ASP 658 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc37 B O GLY 77 B GLY 659 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc38 B O GLY 79 B GLY 661 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc39 B O VAL 81 B VAL 663 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc40 B NE2 HIS 84 B HIS 666 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc41 B O GLY 91 B GLY 673 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc42 B O ASN 93 B ASN 675 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc43 B OD1 ASP 95 B ASP 677 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc44 B ND1 HIS 97 B HIS 679 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc45 B OD2 ASP 99 B ASP 681 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc46 B OD1 ASP 100 B ASP 682 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc47 B O ASP 100 B ASP 682 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc48 B OE2 GLU 102 B GLU 684 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc49 B O GLU 102 B GLU 684 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc50 B NE2 HIS 119 B HIS 701 1_555 I ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc51 B NE2 HIS 123 B HIS 705 1_555 I ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc52 B NE2 HIS 129 B HIS 711 1_555 I ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc53 I ZN ZN . B ZN 801 1_555 N OB MM3 . B MM3 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc54 I ZN ZN . B ZN 801 1_555 N OA MM3 . B MM3 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc55 I ZN ZN . B ZN 801 1_555 N NA MM3 . B MM3 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D5J _atom_sites.fract_transf_matrix[1][1] 0.026469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 301 ZN MZN . D 2 ZN A 1 302 302 ZN MZN . E 3 CA A 1 303 303 CA MCA . F 3 CA A 1 304 304 CA MCA . G 3 CA A 1 305 305 CA MCA . H 4 MM3 A 1 401 401 MM3 INH . I 2 ZN B 1 801 801 ZN MZN . J 2 ZN B 1 802 802 ZN MZN . K 3 CA B 1 803 803 CA MCA . L 3 CA B 1 804 804 CA MCA . M 3 CA B 1 805 805 CA MCA . N 4 MM3 B 1 901 901 MM3 INH . O 5 HOH A 1 402 1 HOH HOH . O 5 HOH A 2 403 5 HOH HOH . O 5 HOH A 3 404 6 HOH HOH . O 5 HOH A 4 405 7 HOH HOH . O 5 HOH A 5 406 8 HOH HOH . O 5 HOH A 6 407 10 HOH HOH . O 5 HOH A 7 408 13 HOH HOH . O 5 HOH A 8 409 15 HOH HOH . O 5 HOH A 9 410 18 HOH HOH . O 5 HOH A 10 411 19 HOH HOH . O 5 HOH A 11 412 20 HOH HOH . O 5 HOH A 12 413 26 HOH HOH . O 5 HOH A 13 414 27 HOH HOH . O 5 HOH A 14 415 28 HOH HOH . O 5 HOH A 15 416 29 HOH HOH . O 5 HOH A 16 417 30 HOH HOH . O 5 HOH A 17 418 31 HOH HOH . O 5 HOH A 18 419 32 HOH HOH . O 5 HOH A 19 420 33 HOH HOH . O 5 HOH A 20 421 34 HOH HOH . O 5 HOH A 21 422 35 HOH HOH . O 5 HOH A 22 423 36 HOH HOH . O 5 HOH A 23 424 38 HOH HOH . O 5 HOH A 24 425 40 HOH HOH . O 5 HOH A 25 426 42 HOH HOH . O 5 HOH A 26 427 43 HOH HOH . O 5 HOH A 27 428 46 HOH HOH . O 5 HOH A 28 429 47 HOH HOH . O 5 HOH A 29 430 49 HOH HOH . O 5 HOH A 30 431 51 HOH HOH . O 5 HOH A 31 432 53 HOH HOH . O 5 HOH A 32 433 54 HOH HOH . O 5 HOH A 33 434 56 HOH HOH . O 5 HOH A 34 435 57 HOH HOH . O 5 HOH A 35 436 63 HOH HOH . O 5 HOH A 36 437 65 HOH HOH . O 5 HOH A 37 438 66 HOH HOH . O 5 HOH A 38 439 69 HOH HOH . O 5 HOH A 39 440 70 HOH HOH . O 5 HOH A 40 441 73 HOH HOH . O 5 HOH A 41 442 74 HOH HOH . O 5 HOH A 42 443 76 HOH HOH . O 5 HOH A 43 444 80 HOH HOH . O 5 HOH A 44 445 81 HOH HOH . O 5 HOH A 45 446 84 HOH HOH . O 5 HOH A 46 447 86 HOH HOH . O 5 HOH A 47 448 87 HOH HOH . O 5 HOH A 48 449 88 HOH HOH . O 5 HOH A 49 450 89 HOH HOH . P 5 HOH B 1 2 2 HOH HOH . P 5 HOH B 2 3 3 HOH HOH . P 5 HOH B 3 4 4 HOH HOH . P 5 HOH B 4 9 9 HOH HOH . P 5 HOH B 5 11 11 HOH HOH . P 5 HOH B 6 12 12 HOH HOH . P 5 HOH B 7 14 14 HOH HOH . P 5 HOH B 8 16 16 HOH HOH . P 5 HOH B 9 17 17 HOH HOH . P 5 HOH B 10 21 21 HOH HOH . P 5 HOH B 11 22 22 HOH HOH . P 5 HOH B 12 23 23 HOH HOH . P 5 HOH B 13 24 24 HOH HOH . P 5 HOH B 14 25 25 HOH HOH . P 5 HOH B 15 37 37 HOH HOH . P 5 HOH B 16 39 39 HOH HOH . P 5 HOH B 17 41 41 HOH HOH . P 5 HOH B 18 44 44 HOH HOH . P 5 HOH B 19 45 45 HOH HOH . P 5 HOH B 20 48 48 HOH HOH . P 5 HOH B 21 50 50 HOH HOH . P 5 HOH B 22 52 52 HOH HOH . P 5 HOH B 23 55 55 HOH HOH . P 5 HOH B 24 58 58 HOH HOH . P 5 HOH B 25 59 59 HOH HOH . P 5 HOH B 26 60 60 HOH HOH . P 5 HOH B 27 61 61 HOH HOH . P 5 HOH B 28 62 62 HOH HOH . P 5 HOH B 29 64 64 HOH HOH . P 5 HOH B 30 67 67 HOH HOH . P 5 HOH B 31 68 68 HOH HOH . P 5 HOH B 32 71 71 HOH HOH . P 5 HOH B 33 72 72 HOH HOH . P 5 HOH B 34 75 75 HOH HOH . P 5 HOH B 35 77 77 HOH HOH . P 5 HOH B 36 78 78 HOH HOH . P 5 HOH B 37 79 79 HOH HOH . P 5 HOH B 38 82 82 HOH HOH . P 5 HOH B 39 83 83 HOH HOH . P 5 HOH B 40 85 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.276 _atom_site.Cartn_y 26.264 _atom_site.Cartn_z 34.78 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #