data_1D5J
#
_model_server_result.job_id            1068YsZ-UFeiqRv0XN5nGg 
_model_server_result.datetime_utc      '2024-11-23 13:51:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    1D5J 
#
_exptl.entry_id    1D5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1D5J 
_cell.length_a            37.78 
_cell.length_b            78.54 
_cell.length_c            105.27 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,O 1 1 
B,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc2 A OD1 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc3 A O ASP 59 A ASP 141 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc5 A OD2 ASP 71 A ASP 153 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc6 A OD1 ASP 76 A ASP 158 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc7 A O GLY 77 A GLY 159 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc8 A O GLY 79 A GLY 161 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc9 A O VAL 81 A VAL 163 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc10 A NE2 HIS 84 A HIS 166 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc11 A O GLY 91 A GLY 173 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc12 A O ASN 93 A ASN 175 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc13 A OD1 ASP 95 A ASP 177 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc14 A ND1 HIS 97 A HIS 179 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc15 A OD2 ASP 99 A ASP 181 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc16 A O ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc17 A OD1 ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc19 A O GLU 102 A GLU 184 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc20 A NE2 HIS 119 A HIS 201 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc21 A NE2 HIS 123 A HIS 205 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc22 A NE2 HIS 129 A HIS 211 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc23 C ZN ZN . A ZN 301 1_555 H OA MM3 . A MM3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc24 C ZN ZN . A ZN 301 1_555 H OB MM3 . A MM3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
metalc ? metalc25 F CA CA . A CA 304 1_555 O O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc26 G CA CA . A CA 305 1_555 O O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc27 G CA CA . A CA 305 1_555 O O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc28 P O HOH . B HOH 14 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc29 P O HOH . B HOH 16 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc30 P O HOH . B HOH 21 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc31 B OD2 ASP 25 B ASP 607 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc32 B OD1 ASP 25 B ASP 607 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc33 B O ASP 59 B ASP 641 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc34 B NE2 HIS 69 B HIS 651 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc35 B OD2 ASP 71 B ASP 653 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc36 B OD1 ASP 76 B ASP 658 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc37 B O GLY 77 B GLY 659 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc38 B O GLY 79 B GLY 661 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc39 B O VAL 81 B VAL 663 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc40 B NE2 HIS 84 B HIS 666 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc41 B O GLY 91 B GLY 673 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc42 B O ASN 93 B ASN 675 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc43 B OD1 ASP 95 B ASP 677 1_555 M CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc44 B ND1 HIS 97 B HIS 679 1_555 J ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc45 B OD2 ASP 99 B ASP 681 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc46 B OD1 ASP 100 B ASP 682 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc47 B O ASP 100 B ASP 682 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc48 B OE2 GLU 102 B GLU 684 1_555 K CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc49 B O GLU 102 B GLU 684 1_555 L CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc50 B NE2 HIS 119 B HIS 701 1_555 I ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc51 B NE2 HIS 123 B HIS 705 1_555 I ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc52 B NE2 HIS 129 B HIS 711 1_555 I ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc53 I ZN ZN . B ZN 801 1_555 N OB MM3 . B MM3 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
metalc ? metalc54 I ZN ZN . B ZN 801 1_555 N OA MM3 . B MM3 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
metalc ? metalc55 I ZN ZN . B ZN 801 1_555 N NA MM3 . B MM3 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1D5J 
_atom_sites.fract_transf_matrix[1][1]    0.026469 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012732 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009499 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 301 ZN MZN . 
D 2 ZN A 1 302 302 ZN MZN . 
E 3 CA A 1 303 303 CA MCA . 
F 3 CA A 1 304 304 CA MCA . 
G 3 CA A 1 305 305 CA MCA . 
H 4 MM3 A 1 401 401 MM3 INH . 
I 2 ZN B 1 801 801 ZN MZN . 
J 2 ZN B 1 802 802 ZN MZN . 
K 3 CA B 1 803 803 CA MCA . 
L 3 CA B 1 804 804 CA MCA . 
M 3 CA B 1 805 805 CA MCA . 
N 4 MM3 B 1 901 901 MM3 INH . 
O 5 HOH A 1 402 1 HOH HOH . 
O 5 HOH A 2 403 5 HOH HOH . 
O 5 HOH A 3 404 6 HOH HOH . 
O 5 HOH A 4 405 7 HOH HOH . 
O 5 HOH A 5 406 8 HOH HOH . 
O 5 HOH A 6 407 10 HOH HOH . 
O 5 HOH A 7 408 13 HOH HOH . 
O 5 HOH A 8 409 15 HOH HOH . 
O 5 HOH A 9 410 18 HOH HOH . 
O 5 HOH A 10 411 19 HOH HOH . 
O 5 HOH A 11 412 20 HOH HOH . 
O 5 HOH A 12 413 26 HOH HOH . 
O 5 HOH A 13 414 27 HOH HOH . 
O 5 HOH A 14 415 28 HOH HOH . 
O 5 HOH A 15 416 29 HOH HOH . 
O 5 HOH A 16 417 30 HOH HOH . 
O 5 HOH A 17 418 31 HOH HOH . 
O 5 HOH A 18 419 32 HOH HOH . 
O 5 HOH A 19 420 33 HOH HOH . 
O 5 HOH A 20 421 34 HOH HOH . 
O 5 HOH A 21 422 35 HOH HOH . 
O 5 HOH A 22 423 36 HOH HOH . 
O 5 HOH A 23 424 38 HOH HOH . 
O 5 HOH A 24 425 40 HOH HOH . 
O 5 HOH A 25 426 42 HOH HOH . 
O 5 HOH A 26 427 43 HOH HOH . 
O 5 HOH A 27 428 46 HOH HOH . 
O 5 HOH A 28 429 47 HOH HOH . 
O 5 HOH A 29 430 49 HOH HOH . 
O 5 HOH A 30 431 51 HOH HOH . 
O 5 HOH A 31 432 53 HOH HOH . 
O 5 HOH A 32 433 54 HOH HOH . 
O 5 HOH A 33 434 56 HOH HOH . 
O 5 HOH A 34 435 57 HOH HOH . 
O 5 HOH A 35 436 63 HOH HOH . 
O 5 HOH A 36 437 65 HOH HOH . 
O 5 HOH A 37 438 66 HOH HOH . 
O 5 HOH A 38 439 69 HOH HOH . 
O 5 HOH A 39 440 70 HOH HOH . 
O 5 HOH A 40 441 73 HOH HOH . 
O 5 HOH A 41 442 74 HOH HOH . 
O 5 HOH A 42 443 76 HOH HOH . 
O 5 HOH A 43 444 80 HOH HOH . 
O 5 HOH A 44 445 81 HOH HOH . 
O 5 HOH A 45 446 84 HOH HOH . 
O 5 HOH A 46 447 86 HOH HOH . 
O 5 HOH A 47 448 87 HOH HOH . 
O 5 HOH A 48 449 88 HOH HOH . 
O 5 HOH A 49 450 89 HOH HOH . 
P 5 HOH B 1 2 2 HOH HOH . 
P 5 HOH B 2 3 3 HOH HOH . 
P 5 HOH B 3 4 4 HOH HOH . 
P 5 HOH B 4 9 9 HOH HOH . 
P 5 HOH B 5 11 11 HOH HOH . 
P 5 HOH B 6 12 12 HOH HOH . 
P 5 HOH B 7 14 14 HOH HOH . 
P 5 HOH B 8 16 16 HOH HOH . 
P 5 HOH B 9 17 17 HOH HOH . 
P 5 HOH B 10 21 21 HOH HOH . 
P 5 HOH B 11 22 22 HOH HOH . 
P 5 HOH B 12 23 23 HOH HOH . 
P 5 HOH B 13 24 24 HOH HOH . 
P 5 HOH B 14 25 25 HOH HOH . 
P 5 HOH B 15 37 37 HOH HOH . 
P 5 HOH B 16 39 39 HOH HOH . 
P 5 HOH B 17 41 41 HOH HOH . 
P 5 HOH B 18 44 44 HOH HOH . 
P 5 HOH B 19 45 45 HOH HOH . 
P 5 HOH B 20 48 48 HOH HOH . 
P 5 HOH B 21 50 50 HOH HOH . 
P 5 HOH B 22 52 52 HOH HOH . 
P 5 HOH B 23 55 55 HOH HOH . 
P 5 HOH B 24 58 58 HOH HOH . 
P 5 HOH B 25 59 59 HOH HOH . 
P 5 HOH B 26 60 60 HOH HOH . 
P 5 HOH B 27 61 61 HOH HOH . 
P 5 HOH B 28 62 62 HOH HOH . 
P 5 HOH B 29 64 64 HOH HOH . 
P 5 HOH B 30 67 67 HOH HOH . 
P 5 HOH B 31 68 68 HOH HOH . 
P 5 HOH B 32 71 71 HOH HOH . 
P 5 HOH B 33 72 72 HOH HOH . 
P 5 HOH B 34 75 75 HOH HOH . 
P 5 HOH B 35 77 77 HOH HOH . 
P 5 HOH B 36 78 78 HOH HOH . 
P 5 HOH B 37 79 79 HOH HOH . 
P 5 HOH B 38 82 82 HOH HOH . 
P 5 HOH B 39 83 83 HOH HOH . 
P 5 HOH B 40 85 85 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -9.82 
_atom_site.Cartn_y               24.999 
_atom_site.Cartn_z               44.372 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        8.62 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           304 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#