data_1D6S
#
_model_server_result.job_id            Rvi_qKSzfX4YQTnNmYa6qg 
_model_server_result.datetime_utc      '2024-11-02 05:28:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d6s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    1D6S 
#
_exptl.entry_id    1D6S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              149.211 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1D6S 
_cell.length_a            96.94 
_cell.length_b            149.93 
_cell.length_c            53.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D6S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C N MET . A MET 401 1_555 D C4A PLP . A PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? 
covale ? covale2 F N MET . B MET 402 1_555 E C4A PLP . B PLP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
#
_chem_comp.formula           'C5 H11 N O2 S' 
_chem_comp.formula_weight    149.211 
_chem_comp.id                MET 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              METHIONINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA MET sing 218 n n 
N H MET sing 219 n n 
N H2 MET sing 220 n n 
CA C MET sing 221 n n 
CA CB MET sing 222 n n 
CA HA MET sing 223 n n 
C O MET doub 224 n n 
C OXT MET sing 225 n n 
CB CG MET sing 226 n n 
CB HB2 MET sing 227 n n 
CB HB3 MET sing 228 n n 
CG SD MET sing 229 n n 
CG HG2 MET sing 230 n n 
CG HG3 MET sing 231 n n 
SD CE MET sing 232 n n 
CE HE1 MET sing 233 n n 
CE HE2 MET sing 234 n n 
CE HE3 MET sing 235 n n 
OXT HXT MET sing 236 n n 
#
_atom_sites.entry_id                     1D6S 
_atom_sites.fract_transf_matrix[1][1]    0.010316 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00667 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018643 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MET A 1 401 1 MET MET . 
D 3 PLP A 1 501 1 PLP PLP . 
E 3 PLP B 1 502 2 PLP PLP . 
F 2 MET B 1 402 1 MET MET . 
G 4 HOH A 1 502 4 HOH HOH . 
G 4 HOH A 2 503 6 HOH HOH . 
G 4 HOH A 3 504 7 HOH HOH . 
G 4 HOH A 4 505 8 HOH HOH . 
G 4 HOH A 5 506 11 HOH HOH . 
G 4 HOH A 6 507 12 HOH HOH . 
G 4 HOH A 7 508 13 HOH HOH . 
G 4 HOH A 8 509 14 HOH HOH . 
G 4 HOH A 9 510 16 HOH HOH . 
G 4 HOH A 10 511 18 HOH HOH . 
G 4 HOH A 11 512 24 HOH HOH . 
G 4 HOH A 12 513 25 HOH HOH . 
G 4 HOH A 13 514 29 HOH HOH . 
G 4 HOH A 14 515 30 HOH HOH . 
G 4 HOH A 15 516 33 HOH HOH . 
G 4 HOH A 16 517 38 HOH HOH . 
G 4 HOH A 17 518 39 HOH HOH . 
G 4 HOH A 18 519 40 HOH HOH . 
G 4 HOH A 19 520 41 HOH HOH . 
G 4 HOH A 20 521 42 HOH HOH . 
G 4 HOH A 21 522 44 HOH HOH . 
G 4 HOH A 22 523 51 HOH HOH . 
G 4 HOH A 23 524 56 HOH HOH . 
G 4 HOH A 24 525 59 HOH HOH . 
G 4 HOH A 25 526 60 HOH HOH . 
G 4 HOH A 26 527 62 HOH HOH . 
G 4 HOH A 27 528 64 HOH HOH . 
G 4 HOH A 28 529 66 HOH HOH . 
G 4 HOH A 29 530 68 HOH HOH . 
G 4 HOH A 30 531 69 HOH HOH . 
G 4 HOH A 31 532 71 HOH HOH . 
G 4 HOH A 32 533 72 HOH HOH . 
G 4 HOH A 33 534 73 HOH HOH . 
G 4 HOH A 34 535 77 HOH HOH . 
G 4 HOH A 35 536 78 HOH HOH . 
G 4 HOH A 36 537 80 HOH HOH . 
G 4 HOH A 37 538 84 HOH HOH . 
G 4 HOH A 38 539 88 HOH HOH . 
G 4 HOH A 39 540 89 HOH HOH . 
G 4 HOH A 40 541 91 HOH HOH . 
G 4 HOH A 41 542 92 HOH HOH . 
G 4 HOH A 42 543 94 HOH HOH . 
G 4 HOH A 43 544 95 HOH HOH . 
G 4 HOH A 44 545 96 HOH HOH . 
G 4 HOH A 45 546 104 HOH HOH . 
G 4 HOH A 46 547 105 HOH HOH . 
G 4 HOH A 47 548 107 HOH HOH . 
G 4 HOH A 48 549 108 HOH HOH . 
G 4 HOH A 49 550 109 HOH HOH . 
G 4 HOH A 50 551 113 HOH HOH . 
G 4 HOH A 51 552 115 HOH HOH . 
G 4 HOH A 52 553 117 HOH HOH . 
G 4 HOH A 53 554 118 HOH HOH . 
G 4 HOH A 54 555 119 HOH HOH . 
G 4 HOH A 55 556 120 HOH HOH . 
G 4 HOH A 56 557 122 HOH HOH . 
G 4 HOH A 57 558 125 HOH HOH . 
G 4 HOH A 58 559 127 HOH HOH . 
G 4 HOH A 59 560 128 HOH HOH . 
G 4 HOH A 60 561 129 HOH HOH . 
G 4 HOH A 61 562 131 HOH HOH . 
G 4 HOH A 62 563 133 HOH HOH . 
G 4 HOH A 63 564 134 HOH HOH . 
G 4 HOH A 64 565 137 HOH HOH . 
G 4 HOH A 65 566 140 HOH HOH . 
G 4 HOH A 66 567 141 HOH HOH . 
G 4 HOH A 67 568 142 HOH HOH . 
G 4 HOH A 68 569 145 HOH HOH . 
G 4 HOH A 69 570 147 HOH HOH . 
G 4 HOH A 70 571 150 HOH HOH . 
G 4 HOH A 71 572 156 HOH HOH . 
G 4 HOH A 72 573 164 HOH HOH . 
G 4 HOH A 73 574 167 HOH HOH . 
G 4 HOH A 74 575 171 HOH HOH . 
G 4 HOH A 75 576 179 HOH HOH . 
G 4 HOH A 76 577 180 HOH HOH . 
G 4 HOH A 77 578 181 HOH HOH . 
G 4 HOH A 78 579 182 HOH HOH . 
G 4 HOH A 79 580 183 HOH HOH . 
G 4 HOH A 80 581 184 HOH HOH . 
G 4 HOH A 81 582 185 HOH HOH . 
G 4 HOH A 82 583 186 HOH HOH . 
G 4 HOH A 83 584 187 HOH HOH . 
G 4 HOH A 84 585 188 HOH HOH . 
G 4 HOH A 85 586 190 HOH HOH . 
G 4 HOH A 86 587 193 HOH HOH . 
G 4 HOH A 87 588 194 HOH HOH . 
G 4 HOH A 88 589 197 HOH HOH . 
G 4 HOH A 89 590 200 HOH HOH . 
G 4 HOH A 90 591 201 HOH HOH . 
G 4 HOH A 91 592 202 HOH HOH . 
G 4 HOH A 92 593 203 HOH HOH . 
G 4 HOH A 93 594 205 HOH HOH . 
G 4 HOH A 94 595 208 HOH HOH . 
G 4 HOH A 95 596 211 HOH HOH . 
G 4 HOH A 96 597 213 HOH HOH . 
G 4 HOH A 97 598 219 HOH HOH . 
G 4 HOH A 98 599 222 HOH HOH . 
G 4 HOH A 99 600 225 HOH HOH . 
G 4 HOH A 100 601 229 HOH HOH . 
G 4 HOH A 101 602 230 HOH HOH . 
G 4 HOH A 102 603 231 HOH HOH . 
G 4 HOH A 103 604 232 HOH HOH . 
G 4 HOH A 104 605 236 HOH HOH . 
G 4 HOH A 105 606 237 HOH HOH . 
G 4 HOH A 106 607 243 HOH HOH . 
G 4 HOH A 107 608 244 HOH HOH . 
G 4 HOH A 108 609 245 HOH HOH . 
G 4 HOH A 109 610 247 HOH HOH . 
H 4 HOH B 1 503 2 HOH HOH . 
H 4 HOH B 2 504 3 HOH HOH . 
H 4 HOH B 3 505 5 HOH HOH . 
H 4 HOH B 4 506 9 HOH HOH . 
H 4 HOH B 5 507 10 HOH HOH . 
H 4 HOH B 6 508 15 HOH HOH . 
H 4 HOH B 7 509 17 HOH HOH . 
H 4 HOH B 8 510 19 HOH HOH . 
H 4 HOH B 9 511 20 HOH HOH . 
H 4 HOH B 10 512 21 HOH HOH . 
H 4 HOH B 11 513 22 HOH HOH . 
H 4 HOH B 12 514 23 HOH HOH . 
H 4 HOH B 13 515 26 HOH HOH . 
H 4 HOH B 14 516 27 HOH HOH . 
H 4 HOH B 15 517 28 HOH HOH . 
H 4 HOH B 16 518 32 HOH HOH . 
H 4 HOH B 17 519 34 HOH HOH . 
H 4 HOH B 18 520 35 HOH HOH . 
H 4 HOH B 19 521 36 HOH HOH . 
H 4 HOH B 20 522 37 HOH HOH . 
H 4 HOH B 21 523 43 HOH HOH . 
H 4 HOH B 22 524 45 HOH HOH . 
H 4 HOH B 23 525 46 HOH HOH . 
H 4 HOH B 24 526 47 HOH HOH . 
H 4 HOH B 25 527 48 HOH HOH . 
H 4 HOH B 26 528 53 HOH HOH . 
H 4 HOH B 27 529 54 HOH HOH . 
H 4 HOH B 28 530 55 HOH HOH . 
H 4 HOH B 29 531 57 HOH HOH . 
H 4 HOH B 30 532 58 HOH HOH . 
H 4 HOH B 31 533 61 HOH HOH . 
H 4 HOH B 32 534 63 HOH HOH . 
H 4 HOH B 33 535 65 HOH HOH . 
H 4 HOH B 34 536 67 HOH HOH . 
H 4 HOH B 35 537 70 HOH HOH . 
H 4 HOH B 36 538 74 HOH HOH . 
H 4 HOH B 37 539 75 HOH HOH . 
H 4 HOH B 38 540 76 HOH HOH . 
H 4 HOH B 39 541 79 HOH HOH . 
H 4 HOH B 40 542 81 HOH HOH . 
H 4 HOH B 41 543 82 HOH HOH . 
H 4 HOH B 42 544 83 HOH HOH . 
H 4 HOH B 43 545 85 HOH HOH . 
H 4 HOH B 44 546 87 HOH HOH . 
H 4 HOH B 45 547 90 HOH HOH . 
H 4 HOH B 46 548 93 HOH HOH . 
H 4 HOH B 47 549 97 HOH HOH . 
H 4 HOH B 48 550 98 HOH HOH . 
H 4 HOH B 49 551 99 HOH HOH . 
H 4 HOH B 50 552 101 HOH HOH . 
H 4 HOH B 51 553 103 HOH HOH . 
H 4 HOH B 52 554 106 HOH HOH . 
H 4 HOH B 53 555 110 HOH HOH . 
H 4 HOH B 54 556 111 HOH HOH . 
H 4 HOH B 55 557 112 HOH HOH . 
H 4 HOH B 56 558 114 HOH HOH . 
H 4 HOH B 57 559 116 HOH HOH . 
H 4 HOH B 58 560 121 HOH HOH . 
H 4 HOH B 59 561 123 HOH HOH . 
H 4 HOH B 60 562 124 HOH HOH . 
H 4 HOH B 61 563 126 HOH HOH . 
H 4 HOH B 62 564 130 HOH HOH . 
H 4 HOH B 63 565 132 HOH HOH . 
H 4 HOH B 64 566 135 HOH HOH . 
H 4 HOH B 65 567 136 HOH HOH . 
H 4 HOH B 66 568 138 HOH HOH . 
H 4 HOH B 67 569 139 HOH HOH . 
H 4 HOH B 68 570 143 HOH HOH . 
H 4 HOH B 69 571 144 HOH HOH . 
H 4 HOH B 70 572 146 HOH HOH . 
H 4 HOH B 71 573 148 HOH HOH . 
H 4 HOH B 72 574 149 HOH HOH . 
H 4 HOH B 73 575 151 HOH HOH . 
H 4 HOH B 74 576 152 HOH HOH . 
H 4 HOH B 75 577 154 HOH HOH . 
H 4 HOH B 76 578 155 HOH HOH . 
H 4 HOH B 77 579 157 HOH HOH . 
H 4 HOH B 78 580 158 HOH HOH . 
H 4 HOH B 79 581 159 HOH HOH . 
H 4 HOH B 80 582 161 HOH HOH . 
H 4 HOH B 81 583 162 HOH HOH . 
H 4 HOH B 82 584 163 HOH HOH . 
H 4 HOH B 83 585 165 HOH HOH . 
H 4 HOH B 84 586 166 HOH HOH . 
H 4 HOH B 85 587 168 HOH HOH . 
H 4 HOH B 86 588 169 HOH HOH . 
H 4 HOH B 87 589 172 HOH HOH . 
H 4 HOH B 88 590 173 HOH HOH . 
H 4 HOH B 89 591 174 HOH HOH . 
H 4 HOH B 90 592 176 HOH HOH . 
H 4 HOH B 91 593 177 HOH HOH . 
H 4 HOH B 92 594 178 HOH HOH . 
H 4 HOH B 93 595 189 HOH HOH . 
H 4 HOH B 94 596 191 HOH HOH . 
H 4 HOH B 95 597 192 HOH HOH . 
H 4 HOH B 96 598 195 HOH HOH . 
H 4 HOH B 97 599 196 HOH HOH . 
H 4 HOH B 98 600 198 HOH HOH . 
H 4 HOH B 99 601 199 HOH HOH . 
H 4 HOH B 100 602 204 HOH HOH . 
H 4 HOH B 101 603 206 HOH HOH . 
H 4 HOH B 102 604 207 HOH HOH . 
H 4 HOH B 103 605 210 HOH HOH . 
H 4 HOH B 104 606 212 HOH HOH . 
H 4 HOH B 105 607 214 HOH HOH . 
H 4 HOH B 106 608 216 HOH HOH . 
H 4 HOH B 107 609 217 HOH HOH . 
H 4 HOH B 108 610 218 HOH HOH . 
H 4 HOH B 109 611 220 HOH HOH . 
H 4 HOH B 110 612 221 HOH HOH . 
H 4 HOH B 111 613 223 HOH HOH . 
H 4 HOH B 112 614 224 HOH HOH . 
H 4 HOH B 113 615 226 HOH HOH . 
H 4 HOH B 114 616 227 HOH HOH . 
H 4 HOH B 115 617 228 HOH HOH . 
H 4 HOH B 116 618 233 HOH HOH . 
H 4 HOH B 117 619 234 HOH HOH . 
H 4 HOH B 118 620 235 HOH HOH . 
H 4 HOH B 119 621 238 HOH HOH . 
H 4 HOH B 120 622 239 HOH HOH . 
H 4 HOH B 121 623 240 HOH HOH . 
H 4 HOH B 122 624 241 HOH HOH . 
H 4 HOH B 123 625 242 HOH HOH . 
H 4 HOH B 124 626 246 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N MET . . . F 2 40.85 54.121 4.855 1 31.32 ? N MET 402 B 1 
HETATM 2 C CA MET . . . F 2 39.853 54.775 3.94 1 31.91 ? CA MET 402 B 1 
HETATM 3 C C MET . . . F 2 39.342 53.756 2.887 1 31.92 ? C MET 402 B 1 
HETATM 4 O O MET . . . F 2 38.787 54.161 1.84 1 30.36 ? O MET 402 B 1 
HETATM 5 C CB MET . . . F 2 40.463 56.009 3.255 1 27.73 ? CB MET 402 B 1 
HETATM 6 C CG MET . . . F 2 41.407 55.694 2.122 1 35.36 ? CG MET 402 B 1 
HETATM 7 S SD MET . . . F 2 42.188 57.165 1.441 1 42.87 ? SD MET 402 B 1 
HETATM 8 C CE MET . . . F 2 43.532 56.45 0.489 1 39.71 ? CE MET 402 B 1 
HETATM 9 O OXT MET . . . F 2 39.441 52.535 3.147 1 29.01 ? OXT MET 402 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           9 
#