data_1D6V
#
_model_server_result.job_id            80nTptel8d8dLUJbzIXxWQ 
_model_server_result.datetime_utc      '2024-10-11 01:22:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    1D6V 
#
_exptl.entry_id    1D6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.09 
_cell.angle_gamma         90 
_cell.entry_id            1D6V 
_cell.length_a            52.718 
_cell.length_b            64.446 
_cell.length_c            73.87 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf4 B SG CYS 147 H CYS 140 1_555 B SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc1 A OE1 GLU 79 L GLU 79 1_555 C CD CD . L CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? 
metalc ? metalc2 A OE2 GLU 79 L GLU 79 1_555 C CD CD . L CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc3 A OE2 GLU 81 L GLU 81 1_555 F CD CD . L CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc4 A OE1 GLU 81 L GLU 81 1_555 F CD CD . L CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc5 A OD1 ASN 138 L ASN 138 1_555 D CD CD . L CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc6 C CD CD . L CD 501 1_555 H O HOH . L HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc7 D CD CD . L CD 502 1_555 H O HOH . L HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc8 D CD CD . L CD 502 1_555 B NE2 HIS 171 H HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc9 E CD CD . L CD 503 1_555 H O HOH . L HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc10 E CD CD . L CD 503 1_555 H O HOH . L HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc11 F CD CD . L CD 504 1_555 H O HOH . L HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc12 F CD CD . L CD 504 1_555 H O HOH . L HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1D6V 
_atom_sites.fract_transf_matrix[1][1]    0.018969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003035 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013709 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CD L 1 501 501 CD CD . 
D 3 CD L 1 502 502 CD CD . 
E 3 CD L 1 503 503 CD CD . 
F 3 CD L 1 504 504 CD CD . 
G 4 HOP H 1 401 401 HOP HOP . 
H 5 HOH L 1 505 1 HOH HOH . 
H 5 HOH L 2 506 2 HOH HOH . 
H 5 HOH L 3 507 3 HOH HOH . 
H 5 HOH L 4 508 4 HOH HOH . 
H 5 HOH L 5 509 7 HOH HOH . 
H 5 HOH L 6 510 11 HOH HOH . 
H 5 HOH L 7 511 13 HOH HOH . 
H 5 HOH L 8 512 14 HOH HOH . 
H 5 HOH L 9 513 15 HOH HOH . 
H 5 HOH L 10 514 16 HOH HOH . 
H 5 HOH L 11 515 17 HOH HOH . 
H 5 HOH L 12 516 19 HOH HOH . 
H 5 HOH L 13 517 21 HOH HOH . 
H 5 HOH L 14 518 22 HOH HOH . 
H 5 HOH L 15 519 24 HOH HOH . 
H 5 HOH L 16 520 25 HOH HOH . 
H 5 HOH L 17 521 27 HOH HOH . 
H 5 HOH L 18 522 31 HOH HOH . 
H 5 HOH L 19 523 32 HOH HOH . 
H 5 HOH L 20 524 34 HOH HOH . 
H 5 HOH L 21 525 35 HOH HOH . 
H 5 HOH L 22 526 36 HOH HOH . 
H 5 HOH L 23 527 38 HOH HOH . 
H 5 HOH L 24 528 39 HOH HOH . 
H 5 HOH L 25 529 40 HOH HOH . 
H 5 HOH L 26 530 41 HOH HOH . 
H 5 HOH L 27 531 43 HOH HOH . 
H 5 HOH L 28 532 45 HOH HOH . 
H 5 HOH L 29 533 46 HOH HOH . 
H 5 HOH L 30 534 48 HOH HOH . 
H 5 HOH L 31 535 49 HOH HOH . 
H 5 HOH L 32 536 50 HOH HOH . 
H 5 HOH L 33 537 52 HOH HOH . 
H 5 HOH L 34 538 54 HOH HOH . 
H 5 HOH L 35 539 55 HOH HOH . 
H 5 HOH L 36 540 57 HOH HOH . 
H 5 HOH L 37 541 58 HOH HOH . 
H 5 HOH L 38 542 60 HOH HOH . 
H 5 HOH L 39 543 61 HOH HOH . 
H 5 HOH L 40 544 64 HOH HOH . 
H 5 HOH L 41 545 65 HOH HOH . 
H 5 HOH L 42 546 66 HOH HOH . 
H 5 HOH L 43 547 69 HOH HOH . 
H 5 HOH L 44 548 71 HOH HOH . 
H 5 HOH L 45 549 73 HOH HOH . 
H 5 HOH L 46 550 75 HOH HOH . 
H 5 HOH L 47 551 78 HOH HOH . 
H 5 HOH L 48 552 81 HOH HOH . 
H 5 HOH L 49 553 82 HOH HOH . 
H 5 HOH L 50 554 84 HOH HOH . 
H 5 HOH L 51 555 85 HOH HOH . 
H 5 HOH L 52 556 86 HOH HOH . 
H 5 HOH L 53 557 87 HOH HOH . 
H 5 HOH L 54 558 89 HOH HOH . 
H 5 HOH L 55 559 90 HOH HOH . 
H 5 HOH L 56 560 93 HOH HOH . 
H 5 HOH L 57 561 94 HOH HOH . 
H 5 HOH L 58 562 95 HOH HOH . 
H 5 HOH L 59 563 97 HOH HOH . 
H 5 HOH L 60 564 98 HOH HOH . 
H 5 HOH L 61 565 100 HOH HOH . 
H 5 HOH L 62 566 101 HOH HOH . 
H 5 HOH L 63 567 104 HOH HOH . 
H 5 HOH L 64 568 107 HOH HOH . 
H 5 HOH L 65 569 110 HOH HOH . 
H 5 HOH L 66 570 111 HOH HOH . 
H 5 HOH L 67 571 112 HOH HOH . 
H 5 HOH L 68 572 114 HOH HOH . 
H 5 HOH L 69 573 118 HOH HOH . 
H 5 HOH L 70 574 120 HOH HOH . 
H 5 HOH L 71 575 121 HOH HOH . 
H 5 HOH L 72 576 125 HOH HOH . 
H 5 HOH L 73 577 127 HOH HOH . 
H 5 HOH L 74 578 130 HOH HOH . 
H 5 HOH L 75 579 131 HOH HOH . 
H 5 HOH L 76 580 132 HOH HOH . 
H 5 HOH L 77 581 134 HOH HOH . 
H 5 HOH L 78 582 136 HOH HOH . 
H 5 HOH L 79 583 138 HOH HOH . 
H 5 HOH L 80 584 139 HOH HOH . 
H 5 HOH L 81 585 141 HOH HOH . 
H 5 HOH L 82 586 142 HOH HOH . 
I 5 HOH H 1 402 5 HOH HOH . 
I 5 HOH H 2 403 6 HOH HOH . 
I 5 HOH H 3 404 8 HOH HOH . 
I 5 HOH H 4 405 10 HOH HOH . 
I 5 HOH H 5 406 12 HOH HOH . 
I 5 HOH H 6 407 18 HOH HOH . 
I 5 HOH H 7 408 20 HOH HOH . 
I 5 HOH H 8 409 23 HOH HOH . 
I 5 HOH H 9 410 26 HOH HOH . 
I 5 HOH H 10 411 28 HOH HOH . 
I 5 HOH H 11 412 29 HOH HOH . 
I 5 HOH H 12 413 30 HOH HOH . 
I 5 HOH H 13 414 33 HOH HOH . 
I 5 HOH H 14 415 42 HOH HOH . 
I 5 HOH H 15 416 44 HOH HOH . 
I 5 HOH H 16 417 47 HOH HOH . 
I 5 HOH H 17 418 51 HOH HOH . 
I 5 HOH H 18 419 53 HOH HOH . 
I 5 HOH H 19 420 56 HOH HOH . 
I 5 HOH H 20 421 59 HOH HOH . 
I 5 HOH H 21 422 62 HOH HOH . 
I 5 HOH H 22 423 63 HOH HOH . 
I 5 HOH H 23 424 67 HOH HOH . 
I 5 HOH H 24 425 68 HOH HOH . 
I 5 HOH H 25 426 70 HOH HOH . 
I 5 HOH H 26 427 72 HOH HOH . 
I 5 HOH H 27 428 74 HOH HOH . 
I 5 HOH H 28 429 76 HOH HOH . 
I 5 HOH H 29 430 77 HOH HOH . 
I 5 HOH H 30 431 79 HOH HOH . 
I 5 HOH H 31 432 80 HOH HOH . 
I 5 HOH H 32 433 83 HOH HOH . 
I 5 HOH H 33 434 88 HOH HOH . 
I 5 HOH H 34 435 91 HOH HOH . 
I 5 HOH H 35 436 92 HOH HOH . 
I 5 HOH H 36 437 96 HOH HOH . 
I 5 HOH H 37 438 99 HOH HOH . 
I 5 HOH H 38 439 102 HOH HOH . 
I 5 HOH H 39 440 103 HOH HOH . 
I 5 HOH H 40 441 105 HOH HOH . 
I 5 HOH H 41 442 106 HOH HOH . 
I 5 HOH H 42 443 108 HOH HOH . 
I 5 HOH H 43 444 109 HOH HOH . 
I 5 HOH H 44 445 113 HOH HOH . 
I 5 HOH H 45 446 115 HOH HOH . 
I 5 HOH H 46 447 116 HOH HOH . 
I 5 HOH H 47 448 117 HOH HOH . 
I 5 HOH H 48 449 119 HOH HOH . 
I 5 HOH H 49 450 122 HOH HOH . 
I 5 HOH H 50 451 123 HOH HOH . 
I 5 HOH H 51 452 124 HOH HOH . 
I 5 HOH H 52 453 126 HOH HOH . 
I 5 HOH H 53 454 129 HOH HOH . 
I 5 HOH H 54 455 133 HOH HOH . 
I 5 HOH H 55 456 135 HOH HOH . 
I 5 HOH H 56 457 137 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               1.057 
_atom_site.Cartn_y               -13.364 
_atom_site.Cartn_z               28.336 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        50.14 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          L 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#