data_1D6W # _model_server_result.job_id Dvav5xjiK2c1KG_VuxG4gw _model_server_result.datetime_utc '2024-10-24 04:23:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":380}' # _entry.id 1D6W # _exptl.entry_id 1D6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.596 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-N-[trans-4-(2-amino-1H-imidazol-5-yl)cyclohexyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101 _cell.angle_gamma 90 _cell.entry_id 1D6W _cell.length_a 71.43 _cell.length_b 71.67 _cell.length_c 72.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 1 1_555 A SG CYS 149 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? disulf ? disulf2 A SG CYS 58 A CYS 42 1_555 A SG CYS 74 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 203 A CYS 168 1_555 A SG CYS 217 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf4 A SG CYS 231 A CYS 191 1_555 A SG CYS 261 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc1 C NA NA . A NA 950 1_555 A O THR 207 A THR 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 C NA NA . A NA 950 1_555 F O HOH . A HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 C NA NA . A NA 950 1_555 A O LYS 204 A LYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc4 D NA NA . A NA 951 1_555 F O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 D NA NA . A NA 951 1_555 A O LYS 266 A LYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 D NA NA . A NA 951 1_555 A O ARG 263 A ARG 221 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.391 ? covale ? covale1 B C GLU 8 I GLU 362 1_555 B N TYS 9 I TYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B C TYS 9 I TYS 363 1_555 B N LEU 10 I LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? metalc ? metalc7 C NA NA . A NA 950 1_555 A O PHE 245 A PHE 204 4_546 ? ? ? A ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc8 C NA NA . A NA 950 1_555 F O HOH . A HOH 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc9 D NA NA . A NA 951 1_555 F O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc10 D NA NA . A NA 951 1_555 F O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? # _chem_comp.formula 'C24 H29 N7 O5 S' _chem_comp.formula_weight 527.596 _chem_comp.id 00R _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-N-[trans-4-(2-amino-1H-imidazol-5-yl)cyclohexyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D6W _atom_sites.fract_transf_matrix[1][1] 0.014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002721 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 950 950 NA NA . D 3 NA A 1 951 951 NA NA . E 4 00R A 1 380 380 00R 00R . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 407 407 HOH HOH . F 5 HOH A 8 408 408 HOH HOH . F 5 HOH A 9 409 409 HOH HOH . F 5 HOH A 10 411 411 HOH HOH . F 5 HOH A 11 412 412 HOH HOH . F 5 HOH A 12 413 413 HOH HOH . F 5 HOH A 13 414 414 HOH HOH . F 5 HOH A 14 415 415 HOH HOH . F 5 HOH A 15 416 416 HOH HOH . F 5 HOH A 16 417 417 HOH HOH . F 5 HOH A 17 418 418 HOH HOH . F 5 HOH A 18 419 419 HOH HOH . F 5 HOH A 19 420 420 HOH HOH . F 5 HOH A 20 421 421 HOH HOH . F 5 HOH A 21 422 422 HOH HOH . F 5 HOH A 22 423 423 HOH HOH . F 5 HOH A 23 424 424 HOH HOH . F 5 HOH A 24 426 426 HOH HOH . F 5 HOH A 25 428 428 HOH HOH . F 5 HOH A 26 429 429 HOH HOH . F 5 HOH A 27 430 430 HOH HOH . F 5 HOH A 28 431 431 HOH HOH . F 5 HOH A 29 433 433 HOH HOH . F 5 HOH A 30 435 435 HOH HOH . F 5 HOH A 31 436 436 HOH HOH . F 5 HOH A 32 437 437 HOH HOH . F 5 HOH A 33 438 438 HOH HOH . F 5 HOH A 34 439 439 HOH HOH . F 5 HOH A 35 440 440 HOH HOH . F 5 HOH A 36 441 441 HOH HOH . F 5 HOH A 37 442 442 HOH HOH . F 5 HOH A 38 445 445 HOH HOH . F 5 HOH A 39 446 446 HOH HOH . F 5 HOH A 40 447 447 HOH HOH . F 5 HOH A 41 449 449 HOH HOH . F 5 HOH A 42 450 450 HOH HOH . F 5 HOH A 43 451 451 HOH HOH . F 5 HOH A 44 454 454 HOH HOH . F 5 HOH A 45 455 455 HOH HOH . F 5 HOH A 46 456 456 HOH HOH . F 5 HOH A 47 457 457 HOH HOH . F 5 HOH A 48 458 458 HOH HOH . F 5 HOH A 49 459 459 HOH HOH . F 5 HOH A 50 460 460 HOH HOH . F 5 HOH A 51 461 461 HOH HOH . F 5 HOH A 52 462 462 HOH HOH . F 5 HOH A 53 463 463 HOH HOH . F 5 HOH A 54 465 465 HOH HOH . F 5 HOH A 55 466 466 HOH HOH . F 5 HOH A 56 467 467 HOH HOH . F 5 HOH A 57 468 468 HOH HOH . F 5 HOH A 58 471 471 HOH HOH . F 5 HOH A 59 472 472 HOH HOH . F 5 HOH A 60 473 473 HOH HOH . F 5 HOH A 61 474 474 HOH HOH . F 5 HOH A 62 476 476 HOH HOH . F 5 HOH A 63 477 477 HOH HOH . F 5 HOH A 64 479 479 HOH HOH . F 5 HOH A 65 482 482 HOH HOH . F 5 HOH A 66 483 483 HOH HOH . F 5 HOH A 67 488 488 HOH HOH . F 5 HOH A 68 490 490 HOH HOH . F 5 HOH A 69 491 491 HOH HOH . F 5 HOH A 70 493 493 HOH HOH . F 5 HOH A 71 494 494 HOH HOH . F 5 HOH A 72 495 495 HOH HOH . F 5 HOH A 73 496 496 HOH HOH . F 5 HOH A 74 497 497 HOH HOH . F 5 HOH A 75 498 498 HOH HOH . F 5 HOH A 76 501 501 HOH HOH . F 5 HOH A 77 502 502 HOH HOH . F 5 HOH A 78 503 503 HOH HOH . F 5 HOH A 79 504 504 HOH HOH . F 5 HOH A 80 506 506 HOH HOH . F 5 HOH A 81 507 507 HOH HOH . F 5 HOH A 82 508 508 HOH HOH . F 5 HOH A 83 509 509 HOH HOH . F 5 HOH A 84 511 511 HOH HOH . F 5 HOH A 85 512 512 HOH HOH . F 5 HOH A 86 513 513 HOH HOH . F 5 HOH A 87 514 514 HOH HOH . F 5 HOH A 88 515 515 HOH HOH . F 5 HOH A 89 519 519 HOH HOH . F 5 HOH A 90 520 520 HOH HOH . F 5 HOH A 91 521 521 HOH HOH . F 5 HOH A 92 522 522 HOH HOH . F 5 HOH A 93 523 523 HOH HOH . F 5 HOH A 94 524 524 HOH HOH . F 5 HOH A 95 526 526 HOH HOH . F 5 HOH A 96 527 527 HOH HOH . F 5 HOH A 97 528 528 HOH HOH . F 5 HOH A 98 529 529 HOH HOH . F 5 HOH A 99 530 530 HOH HOH . F 5 HOH A 100 532 532 HOH HOH . F 5 HOH A 101 534 534 HOH HOH . F 5 HOH A 102 535 535 HOH HOH . F 5 HOH A 103 536 536 HOH HOH . F 5 HOH A 104 537 537 HOH HOH . F 5 HOH A 105 540 540 HOH HOH . F 5 HOH A 106 541 541 HOH HOH . F 5 HOH A 107 543 543 HOH HOH . F 5 HOH A 108 545 545 HOH HOH . F 5 HOH A 109 546 546 HOH HOH . F 5 HOH A 110 547 547 HOH HOH . F 5 HOH A 111 548 548 HOH HOH . F 5 HOH A 112 549 549 HOH HOH . F 5 HOH A 113 551 551 HOH HOH . F 5 HOH A 114 552 552 HOH HOH . F 5 HOH A 115 554 554 HOH HOH . F 5 HOH A 116 555 555 HOH HOH . F 5 HOH A 117 556 556 HOH HOH . F 5 HOH A 118 557 557 HOH HOH . F 5 HOH A 119 558 558 HOH HOH . F 5 HOH A 120 559 559 HOH HOH . F 5 HOH A 121 562 562 HOH HOH . F 5 HOH A 122 563 563 HOH HOH . F 5 HOH A 123 564 564 HOH HOH . F 5 HOH A 124 566 566 HOH HOH . F 5 HOH A 125 567 567 HOH HOH . F 5 HOH A 126 570 570 HOH HOH . F 5 HOH A 127 571 571 HOH HOH . F 5 HOH A 128 574 574 HOH HOH . F 5 HOH A 129 575 575 HOH HOH . F 5 HOH A 130 576 576 HOH HOH . F 5 HOH A 131 577 577 HOH HOH . G 5 HOH I 1 499 499 HOH HOH . G 5 HOH I 2 525 525 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 00R . . . E 4 13.557 -11.086 19.962 1 48.65 ? C01 00R 380 A 1 HETATM 2 C C02 00R . . . E 4 14.446 -12.467 20.042 1 48.23 ? C02 00R 380 A 1 HETATM 3 C C03 00R . . . E 4 13.495 -13.675 20.332 1 48.26 ? C03 00R 380 A 1 HETATM 4 C C04 00R . . . E 4 12.352 -13.392 21.496 1 48.08 ? C04 00R 380 A 1 HETATM 5 C C05 00R . . . E 4 12.836 -12.068 22.343 1 48.18 ? C05 00R 380 A 1 HETATM 6 C C06 00R . . . E 4 12.945 -10.771 21.469 1 48.47 ? C06 00R 380 A 1 HETATM 7 N N07 00R . . . E 4 18.025 -16.134 23.137 1 45.57 ? N07 00R 380 A 1 HETATM 8 C C08 00R . . . E 4 19.144 -16.323 22.325 1 45.57 ? C08 00R 380 A 1 HETATM 9 O O09 00R . . . E 4 19.809 -17.358 22.188 1 45.03 ? O09 00R 380 A 1 HETATM 10 N N10 00R . . . E 4 19.382 -15.12 21.661 1 45.21 ? N10 00R 380 A 1 HETATM 11 N N11 00R . . . E 4 18.399 -14.22 22.066 1 45.78 ? N11 00R 380 A 1 HETATM 12 C C12 00R . . . E 4 17.569 -14.827 22.999 1 45.41 ? C12 00R 380 A 1 HETATM 13 O O13 00R . . . E 4 16.589 -14.344 23.561 1 45 ? O13 00R 380 A 1 HETATM 14 C C14 00R . . . E 4 20.636 -14.696 21.074 1 45.46 ? C14 00R 380 A 1 HETATM 15 C C15 00R . . . E 4 20.534 -13.351 20.393 1 46.02 ? C15 00R 380 A 1 HETATM 16 C C16 00R . . . E 4 19.423 -12.595 20.551 1 46.46 ? C16 00R 380 A 1 HETATM 17 C C17 00R . . . E 4 18.203 -12.961 21.361 1 46.69 ? C17 00R 380 A 1 HETATM 18 C C18 00R . . . E 4 16.924 -13.116 20.5 1 47.12 ? C18 00R 380 A 1 HETATM 19 O O19 00R . . . E 4 16.903 -13.847 19.237 1 47.12 ? O19 00R 380 A 1 HETATM 20 N N20 00R . . . E 4 15.587 -12.382 20.99 1 47.92 ? N20 00R 380 A 1 HETATM 21 C C22 00R . . . E 4 12.034 -11.9 23.269 1 47.53 ? C22 00R 380 A 1 HETATM 22 N N23 00R . . . E 4 11.647 -12.827 24.248 1 48.1 ? N23 00R 380 A 1 HETATM 23 C C24 00R . . . E 4 10.793 -12.236 25.133 1 48.21 ? C24 00R 380 A 1 HETATM 24 N N25 00R . . . E 4 10.617 -10.975 24.798 1 48.27 ? N25 00R 380 A 1 HETATM 25 C C26 00R . . . E 4 11.444 -10.764 23.583 1 47.47 ? C26 00R 380 A 1 HETATM 26 N N27 00R . . . E 4 10.264 -12.957 26.126 1 48.12 ? N27 00R 380 A 1 HETATM 27 C C31 00R . . . E 4 17.37 -17.15 23.945 1 45.46 ? C31 00R 380 A 1 HETATM 28 C C32 00R . . . E 4 18.337 -17.969 24.759 1 47.11 ? C32 00R 380 A 1 HETATM 29 S S33 00R . . . E 4 18.841 -17.18 26.281 1 47.5 ? S33 00R 380 A 1 HETATM 30 O O34 00R . . . E 4 17.672 -16.395 26.725 1 48.56 ? O34 00R 380 A 1 HETATM 31 O O35 00R . . . E 4 19.261 -18.234 27.191 1 48.78 ? O35 00R 380 A 1 HETATM 32 C C36 00R . . . E 4 20.165 -16.075 25.862 1 47.06 ? C36 00R 380 A 1 HETATM 33 C C37 00R . . . E 4 20.181 -14.756 26.33 1 46.42 ? C37 00R 380 A 1 HETATM 34 C C38 00R . . . E 4 21.2 -13.893 25.943 1 45.89 ? C38 00R 380 A 1 HETATM 35 C C39 00R . . . E 4 22.21 -14.325 25.101 1 45.86 ? C39 00R 380 A 1 HETATM 36 C C40 00R . . . E 4 22.226 -15.63 24.634 1 46.16 ? C40 00R 380 A 1 HETATM 37 C C41 00R . . . E 4 21.207 -16.498 25.015 1 46.84 ? C41 00R 380 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #