data_1D7R # _model_server_result.job_id tJQS5FPHZ0DKrUcyQbFZhw _model_server_result.datetime_utc '2024-12-22 04:03:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":435}' # _entry.id 1D7R # _exptl.entry_id 1D7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1D7R _cell.length_a 152.65 _cell.length_b 152.65 _cell.length_c 86.22 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 76.325 132.198778 0 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 28.74 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 76.325 132.198778 28.74 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 78 A LEU 78 1_555 C K K . A K 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc2 A OG SER 80 A SER 80 1_555 C K K . A K 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 A O ALA 95 A ALA 95 1_555 B NA NA . A NA 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc4 A O THR 98 A THR 98 1_555 B NA NA . A NA 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc5 A OG1 THR 98 A THR 98 1_555 B NA NA . A NA 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc6 A O PRO 99 A PRO 99 1_555 B NA NA . A NA 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc7 A O LEU 102 A LEU 102 1_555 B NA NA . A NA 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc8 A O THR 303 A THR 303 1_555 C K K . A K 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc9 A O VAL 305 A VAL 305 1_555 C K K . A K 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc10 A OD1 ASP 307 A ASP 307 1_555 C K K . A K 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc11 C K K . A K 436 1_555 E O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D7R _atom_sites.fract_transf_matrix[1][1] 0.006551 _atom_sites.fract_transf_matrix[1][2] 0.003782 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 435 435 NA NA+ . C 3 K A 1 436 436 K K+ . D 4 5PA A 1 500 500 5PA ACC . E 5 HOH A 1 501 501 HOH WAT . E 5 HOH A 2 502 502 HOH WAT . E 5 HOH A 3 503 503 HOH WAT . E 5 HOH A 4 504 504 HOH WAT . E 5 HOH A 5 505 505 HOH WAT . E 5 HOH A 6 506 506 HOH WAT . E 5 HOH A 7 507 507 HOH WAT . E 5 HOH A 8 508 508 HOH WAT . E 5 HOH A 9 509 509 HOH WAT . E 5 HOH A 10 510 510 HOH WAT . E 5 HOH A 11 511 511 HOH WAT . E 5 HOH A 12 512 512 HOH WAT . E 5 HOH A 13 513 513 HOH WAT . E 5 HOH A 14 514 514 HOH WAT . E 5 HOH A 15 515 515 HOH WAT . E 5 HOH A 16 516 516 HOH WAT . E 5 HOH A 17 517 517 HOH WAT . E 5 HOH A 18 518 518 HOH WAT . E 5 HOH A 19 519 519 HOH WAT . E 5 HOH A 20 520 520 HOH WAT . E 5 HOH A 21 521 521 HOH WAT . E 5 HOH A 22 522 522 HOH WAT . E 5 HOH A 23 523 523 HOH WAT . E 5 HOH A 24 524 524 HOH WAT . E 5 HOH A 25 525 525 HOH WAT . E 5 HOH A 26 526 526 HOH WAT . E 5 HOH A 27 527 527 HOH WAT . E 5 HOH A 28 528 528 HOH WAT . E 5 HOH A 29 529 529 HOH WAT . E 5 HOH A 30 530 530 HOH WAT . E 5 HOH A 31 531 531 HOH WAT . E 5 HOH A 32 532 532 HOH WAT . E 5 HOH A 33 533 533 HOH WAT . E 5 HOH A 34 534 534 HOH WAT . E 5 HOH A 35 535 535 HOH WAT . E 5 HOH A 36 536 536 HOH WAT . E 5 HOH A 37 537 537 HOH WAT . E 5 HOH A 38 538 538 HOH WAT . E 5 HOH A 39 539 539 HOH WAT . E 5 HOH A 40 540 540 HOH WAT . E 5 HOH A 41 541 541 HOH WAT . E 5 HOH A 42 542 542 HOH WAT . E 5 HOH A 43 543 543 HOH WAT . E 5 HOH A 44 544 544 HOH WAT . E 5 HOH A 45 545 545 HOH WAT . E 5 HOH A 46 546 546 HOH WAT . E 5 HOH A 47 547 547 HOH WAT . E 5 HOH A 48 548 548 HOH WAT . E 5 HOH A 49 549 549 HOH WAT . E 5 HOH A 50 550 550 HOH WAT . E 5 HOH A 51 551 551 HOH WAT . E 5 HOH A 52 552 552 HOH WAT . E 5 HOH A 53 553 553 HOH WAT . E 5 HOH A 54 554 554 HOH WAT . E 5 HOH A 55 555 555 HOH WAT . E 5 HOH A 56 556 556 HOH WAT . E 5 HOH A 57 557 557 HOH WAT . E 5 HOH A 58 558 558 HOH WAT . E 5 HOH A 59 559 559 HOH WAT . E 5 HOH A 60 560 560 HOH WAT . E 5 HOH A 61 561 561 HOH WAT . E 5 HOH A 62 562 562 HOH WAT . E 5 HOH A 63 563 563 HOH WAT . E 5 HOH A 64 564 564 HOH WAT . E 5 HOH A 65 565 565 HOH WAT . E 5 HOH A 66 566 566 HOH WAT . E 5 HOH A 67 568 568 HOH WAT . E 5 HOH A 68 569 569 HOH WAT . E 5 HOH A 69 570 570 HOH WAT . E 5 HOH A 70 571 571 HOH WAT . E 5 HOH A 71 572 572 HOH WAT . E 5 HOH A 72 573 573 HOH WAT . E 5 HOH A 73 574 574 HOH WAT . E 5 HOH A 74 575 575 HOH WAT . E 5 HOH A 75 576 576 HOH WAT . E 5 HOH A 76 577 577 HOH WAT . E 5 HOH A 77 578 578 HOH WAT . E 5 HOH A 78 579 579 HOH WAT . E 5 HOH A 79 580 580 HOH WAT . E 5 HOH A 80 581 581 HOH WAT . E 5 HOH A 81 582 582 HOH WAT . E 5 HOH A 82 583 583 HOH WAT . E 5 HOH A 83 584 584 HOH WAT . E 5 HOH A 84 585 585 HOH WAT . E 5 HOH A 85 586 586 HOH WAT . E 5 HOH A 86 587 587 HOH WAT . E 5 HOH A 87 588 588 HOH WAT . E 5 HOH A 88 589 589 HOH WAT . E 5 HOH A 89 590 590 HOH WAT . E 5 HOH A 90 591 591 HOH WAT . E 5 HOH A 91 601 601 HOH WAT . E 5 HOH A 92 602 602 HOH WAT . E 5 HOH A 93 603 603 HOH WAT . E 5 HOH A 94 604 604 HOH WAT . E 5 HOH A 95 605 605 HOH WAT . E 5 HOH A 96 606 606 HOH WAT . E 5 HOH A 97 607 607 HOH WAT . E 5 HOH A 98 608 608 HOH WAT . E 5 HOH A 99 609 609 HOH WAT . E 5 HOH A 100 610 610 HOH WAT . E 5 HOH A 101 611 611 HOH WAT . E 5 HOH A 102 612 612 HOH WAT . E 5 HOH A 103 613 613 HOH WAT . E 5 HOH A 104 614 614 HOH WAT . E 5 HOH A 105 615 615 HOH WAT . E 5 HOH A 106 616 616 HOH WAT . E 5 HOH A 107 617 617 HOH WAT . E 5 HOH A 108 618 618 HOH WAT . E 5 HOH A 109 619 619 HOH WAT . E 5 HOH A 110 620 620 HOH WAT . E 5 HOH A 111 621 621 HOH WAT . E 5 HOH A 112 622 622 HOH WAT . E 5 HOH A 113 623 623 HOH WAT . E 5 HOH A 114 624 624 HOH WAT . E 5 HOH A 115 625 625 HOH WAT . E 5 HOH A 116 626 626 HOH WAT . E 5 HOH A 117 627 627 HOH WAT . E 5 HOH A 118 628 628 HOH WAT . E 5 HOH A 119 629 629 HOH WAT . E 5 HOH A 120 630 630 HOH WAT . E 5 HOH A 121 631 631 HOH WAT . E 5 HOH A 122 632 632 HOH WAT . E 5 HOH A 123 633 633 HOH WAT . E 5 HOH A 124 634 634 HOH WAT . E 5 HOH A 125 635 635 HOH WAT . E 5 HOH A 126 636 636 HOH WAT . E 5 HOH A 127 637 637 HOH WAT . E 5 HOH A 128 638 638 HOH WAT . E 5 HOH A 129 639 639 HOH WAT . E 5 HOH A 130 640 500 HOH ACC . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.067 _atom_site.Cartn_y 49.302 _atom_site.Cartn_z -6.177 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 435 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #