data_1D7Y # _model_server_result.job_id ZeZlm10Thai3D2TyCmbMFg _model_server_result.datetime_utc '2024-11-16 06:47:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":449}' # _entry.id 1D7Y # _exptl.entry_id 1D7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1D7Y _cell.length_a 99.2 _cell.length_b 99.2 _cell.length_c 175 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1D7Y _atom_sites.fract_transf_matrix[1][1] 0.01008 _atom_sites.fract_transf_matrix[1][2] 0.00582 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 449 449 FAD FAD . C 3 HOH A 1 450 1 HOH HOH . C 3 HOH A 2 451 2 HOH HOH . C 3 HOH A 3 452 3 HOH HOH . C 3 HOH A 4 453 4 HOH HOH . C 3 HOH A 5 454 5 HOH HOH . C 3 HOH A 6 455 6 HOH HOH . C 3 HOH A 7 456 7 HOH HOH . C 3 HOH A 8 457 8 HOH HOH . C 3 HOH A 9 458 9 HOH HOH . C 3 HOH A 10 459 10 HOH HOH . C 3 HOH A 11 460 11 HOH HOH . C 3 HOH A 12 461 12 HOH HOH . C 3 HOH A 13 462 13 HOH HOH . C 3 HOH A 14 463 14 HOH HOH . C 3 HOH A 15 464 15 HOH HOH . C 3 HOH A 16 465 16 HOH HOH . C 3 HOH A 17 466 17 HOH HOH . C 3 HOH A 18 467 18 HOH HOH . C 3 HOH A 19 468 19 HOH HOH . C 3 HOH A 20 469 20 HOH HOH . C 3 HOH A 21 470 21 HOH HOH . C 3 HOH A 22 471 22 HOH HOH . C 3 HOH A 23 472 23 HOH HOH . C 3 HOH A 24 473 24 HOH HOH . C 3 HOH A 25 474 25 HOH HOH . C 3 HOH A 26 475 26 HOH HOH . C 3 HOH A 27 476 27 HOH HOH . C 3 HOH A 28 477 28 HOH HOH . C 3 HOH A 29 478 29 HOH HOH . C 3 HOH A 30 479 30 HOH HOH . C 3 HOH A 31 480 31 HOH HOH . C 3 HOH A 32 481 33 HOH HOH . C 3 HOH A 33 482 34 HOH HOH . C 3 HOH A 34 483 35 HOH HOH . C 3 HOH A 35 484 36 HOH HOH . C 3 HOH A 36 485 37 HOH HOH . C 3 HOH A 37 486 38 HOH HOH . C 3 HOH A 38 487 39 HOH HOH . C 3 HOH A 39 488 40 HOH HOH . C 3 HOH A 40 489 41 HOH HOH . C 3 HOH A 41 490 42 HOH HOH . C 3 HOH A 42 491 43 HOH HOH . C 3 HOH A 43 492 44 HOH HOH . C 3 HOH A 44 493 45 HOH HOH . C 3 HOH A 45 494 46 HOH HOH . C 3 HOH A 46 495 47 HOH HOH . C 3 HOH A 47 496 48 HOH HOH . C 3 HOH A 48 497 49 HOH HOH . C 3 HOH A 49 498 50 HOH HOH . C 3 HOH A 50 499 51 HOH HOH . C 3 HOH A 51 500 52 HOH HOH . C 3 HOH A 52 501 53 HOH HOH . C 3 HOH A 53 502 54 HOH HOH . C 3 HOH A 54 503 55 HOH HOH . C 3 HOH A 55 504 56 HOH HOH . C 3 HOH A 56 505 57 HOH HOH . C 3 HOH A 57 506 58 HOH HOH . C 3 HOH A 58 507 59 HOH HOH . C 3 HOH A 59 508 60 HOH HOH . C 3 HOH A 60 509 61 HOH HOH . C 3 HOH A 61 510 62 HOH HOH . C 3 HOH A 62 511 63 HOH HOH . C 3 HOH A 63 512 64 HOH HOH . C 3 HOH A 64 513 65 HOH HOH . C 3 HOH A 65 514 66 HOH HOH . C 3 HOH A 66 515 67 HOH HOH . C 3 HOH A 67 516 68 HOH HOH . C 3 HOH A 68 517 69 HOH HOH . C 3 HOH A 69 518 70 HOH HOH . C 3 HOH A 70 519 71 HOH HOH . C 3 HOH A 71 520 72 HOH HOH . C 3 HOH A 72 521 73 HOH HOH . C 3 HOH A 73 522 74 HOH HOH . C 3 HOH A 74 523 75 HOH HOH . C 3 HOH A 75 524 76 HOH HOH . C 3 HOH A 76 525 78 HOH HOH . C 3 HOH A 77 526 79 HOH HOH . C 3 HOH A 78 527 80 HOH HOH . C 3 HOH A 79 528 81 HOH HOH . C 3 HOH A 80 529 82 HOH HOH . C 3 HOH A 81 530 83 HOH HOH . C 3 HOH A 82 531 84 HOH HOH . C 3 HOH A 83 532 85 HOH HOH . C 3 HOH A 84 533 86 HOH HOH . C 3 HOH A 85 534 87 HOH HOH . C 3 HOH A 86 535 88 HOH HOH . C 3 HOH A 87 536 89 HOH HOH . C 3 HOH A 88 537 90 HOH HOH . C 3 HOH A 89 538 92 HOH HOH . C 3 HOH A 90 539 93 HOH HOH . C 3 HOH A 91 540 94 HOH HOH . C 3 HOH A 92 541 95 HOH HOH . C 3 HOH A 93 542 96 HOH HOH . C 3 HOH A 94 543 97 HOH HOH . C 3 HOH A 95 544 98 HOH HOH . C 3 HOH A 96 545 99 HOH HOH . C 3 HOH A 97 546 100 HOH HOH . C 3 HOH A 98 547 101 HOH HOH . C 3 HOH A 99 548 102 HOH HOH . C 3 HOH A 100 549 103 HOH HOH . C 3 HOH A 101 550 104 HOH HOH . C 3 HOH A 102 551 105 HOH HOH . C 3 HOH A 103 552 106 HOH HOH . C 3 HOH A 104 553 107 HOH HOH . C 3 HOH A 105 554 108 HOH HOH . C 3 HOH A 106 555 109 HOH HOH . C 3 HOH A 107 556 110 HOH HOH . C 3 HOH A 108 557 111 HOH HOH . C 3 HOH A 109 558 112 HOH HOH . C 3 HOH A 110 559 114 HOH HOH . C 3 HOH A 111 560 115 HOH HOH . C 3 HOH A 112 561 117 HOH HOH . C 3 HOH A 113 562 119 HOH HOH . C 3 HOH A 114 563 120 HOH HOH . C 3 HOH A 115 564 124 HOH HOH . C 3 HOH A 116 565 125 HOH HOH . C 3 HOH A 117 566 126 HOH HOH . C 3 HOH A 118 567 127 HOH HOH . C 3 HOH A 119 568 128 HOH HOH . C 3 HOH A 120 569 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 61.756 12.741 9.018 1 12.85 ? PA FAD 449 A 1 HETATM 2 O O1A FAD . . . B 2 62.218 13.75 8.036 1 12.07 ? O1A FAD 449 A 1 HETATM 3 O O2A FAD . . . B 2 62.564 11.733 9.46 1 14.78 ? O2A FAD 449 A 1 HETATM 4 O O5B FAD . . . B 2 60.751 11.998 8.137 1 10.79 ? O5B FAD 449 A 1 HETATM 5 C C5B FAD . . . B 2 59.626 12.591 7.41 1 14.34 ? C5B FAD 449 A 1 HETATM 6 C C4B FAD . . . B 2 59.359 11.567 6.281 1 12.68 ? C4B FAD 449 A 1 HETATM 7 O O4B FAD . . . B 2 58.195 12.041 5.491 1 11.8 ? O4B FAD 449 A 1 HETATM 8 C C3B FAD . . . B 2 60.503 11.404 5.263 1 13.81 ? C3B FAD 449 A 1 HETATM 9 O O3B FAD . . . B 2 60.865 10.107 4.946 1 15.93 ? O3B FAD 449 A 1 HETATM 10 C C2B FAD . . . B 2 60.023 12.253 4.13 1 14.05 ? C2B FAD 449 A 1 HETATM 11 O O2B FAD . . . B 2 60.657 12.002 2.915 1 16.06 ? O2B FAD 449 A 1 HETATM 12 C C1B FAD . . . B 2 58.583 11.849 4.098 1 11.41 ? C1B FAD 449 A 1 HETATM 13 N N9A FAD . . . B 2 57.697 12.72 3.347 1 14.7 ? N9A FAD 449 A 1 HETATM 14 C C8A FAD . . . B 2 57.829 14.084 3.163 1 15.67 ? C8A FAD 449 A 1 HETATM 15 N N7A FAD . . . B 2 56.862 14.596 2.411 1 15.87 ? N7A FAD 449 A 1 HETATM 16 C C5A FAD . . . B 2 56.062 13.527 2.087 1 14.3 ? C5A FAD 449 A 1 HETATM 17 C C6A FAD . . . B 2 54.835 13.43 1.277 1 14.84 ? C6A FAD 449 A 1 HETATM 18 N N6A FAD . . . B 2 54.266 14.442 0.681 1 12.06 ? N6A FAD 449 A 1 HETATM 19 N N1A FAD . . . B 2 54.308 12.158 1.181 1 17.57 ? N1A FAD 449 A 1 HETATM 20 C C2A FAD . . . B 2 54.876 11.073 1.788 1 10.06 ? C2A FAD 449 A 1 HETATM 21 N N3A FAD . . . B 2 55.993 11.075 2.543 1 13.24 ? N3A FAD 449 A 1 HETATM 22 C C4A FAD . . . B 2 56.552 12.322 2.665 1 11.12 ? C4A FAD 449 A 1 HETATM 23 N N1 FAD . . . B 2 68.876 14.262 16.036 1 11.05 ? N1 FAD 449 A 1 HETATM 24 C C2 FAD . . . B 2 69.385 14.068 17.242 1 11.28 ? C2 FAD 449 A 1 HETATM 25 O O2 FAD . . . B 2 68.793 14.392 18.228 1 12.72 ? O2 FAD 449 A 1 HETATM 26 N N3 FAD . . . B 2 70.672 13.464 17.432 1 11.27 ? N3 FAD 449 A 1 HETATM 27 C C4 FAD . . . B 2 71.456 13.059 16.368 1 9.48 ? C4 FAD 449 A 1 HETATM 28 O O4 FAD . . . B 2 72.541 12.55 16.581 1 14.87 ? O4 FAD 449 A 1 HETATM 29 C C4X FAD . . . B 2 70.921 13.279 15.037 1 11.89 ? C4X FAD 449 A 1 HETATM 30 N N5 FAD . . . B 2 71.649 12.913 13.938 1 10.73 ? N5 FAD 449 A 1 HETATM 31 C C5X FAD . . . B 2 71.1 13.137 12.696 1 10.98 ? C5X FAD 449 A 1 HETATM 32 C C6 FAD . . . B 2 71.865 12.761 11.555 1 10.57 ? C6 FAD 449 A 1 HETATM 33 C C7 FAD . . . B 2 71.385 12.946 10.266 1 10.64 ? C7 FAD 449 A 1 HETATM 34 C C7M FAD . . . B 2 72.234 12.534 9.084 1 7.67 ? C7M FAD 449 A 1 HETATM 35 C C8 FAD . . . B 2 70.056 13.54 10.058 1 10.71 ? C8 FAD 449 A 1 HETATM 36 C C8M FAD . . . B 2 69.471 13.767 8.688 1 7.05 ? C8M FAD 449 A 1 HETATM 37 C C9 FAD . . . B 2 69.291 13.918 11.184 1 10.69 ? C9 FAD 449 A 1 HETATM 38 C C9A FAD . . . B 2 69.796 13.724 12.497 1 13.17 ? C9A FAD 449 A 1 HETATM 39 N N10 FAD . . . B 2 69.054 14.097 13.709 1 12.58 ? N10 FAD 449 A 1 HETATM 40 C C10 FAD . . . B 2 69.579 13.896 14.928 1 11.43 ? C10 FAD 449 A 1 HETATM 41 C C1' FAD . . . B 2 67.706 14.693 13.519 1 11.37 ? C1' FAD 449 A 1 HETATM 42 C C2' FAD . . . B 2 66.621 13.547 13.502 1 14.5 ? C2' FAD 449 A 1 HETATM 43 O O2' FAD . . . B 2 67.013 12.576 12.553 1 13.41 ? O2' FAD 449 A 1 HETATM 44 C C3' FAD . . . B 2 65.312 14.225 13.152 1 15.54 ? C3' FAD 449 A 1 HETATM 45 O O3' FAD . . . B 2 64.975 15.141 14.188 1 14.65 ? O3' FAD 449 A 1 HETATM 46 C C4' FAD . . . B 2 64.182 13.208 12.988 1 16.48 ? C4' FAD 449 A 1 HETATM 47 O O4' FAD . . . B 2 64.521 12.267 11.934 1 16.81 ? O4' FAD 449 A 1 HETATM 48 C C5' FAD . . . B 2 62.918 13.957 12.604 1 12.34 ? C5' FAD 449 A 1 HETATM 49 O O5' FAD . . . B 2 61.789 12.875 12.389 1 12.09 ? O5' FAD 449 A 1 HETATM 50 P P FAD . . . B 2 60.546 13.193 11.593 1 14.46 ? P FAD 449 A 1 HETATM 51 O O1P FAD . . . B 2 59.732 11.883 11.788 1 16.91 ? O1P FAD 449 A 1 HETATM 52 O O2P FAD . . . B 2 59.887 14.347 12.007 1 14.08 ? O2P FAD 449 A 1 HETATM 53 O O3P FAD . . . B 2 60.827 13.4 10.153 1 15.14 ? O3P FAD 449 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #