data_1D8E # _model_server_result.job_id JLfbIZ6yV-VmuzCgPlYrVQ _model_server_result.datetime_utc '2024-11-24 09:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3003}' # _entry.id 1D8E # _exptl.entry_id 1D8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.398 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)-METHYL]-PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1D8E _cell.length_a 171.411 _cell.length_b 171.411 _cell.length_c 69.663 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H30 N O5 P' _chem_comp.formula_weight 359.398 _chem_comp.id FII _chem_comp.mon_nstd_flag . _chem_comp.name '[(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)-METHYL]-PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'FPP ANALOG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FII sing 89 n n C1 H11 FII sing 90 n n C1 H12 FII sing 91 n n C1 H13 FII sing 92 n n C2 C6 FII sing 93 n n C2 C10 FII doub 94 n n C6 H61 FII sing 95 n n C6 H62 FII sing 96 n n C6 H63 FII sing 97 n n C10 C11 FII sing 98 n n C10 H101 FII sing 99 n n C11 C12 FII sing 100 n n C11 H111 FII sing 101 n n C11 H112 FII sing 102 n n C12 C15 FII sing 103 n n C12 H121 FII sing 104 n n C12 H122 FII sing 105 n n C15 C18 FII sing 106 n n C15 C22 FII doub 107 e n C18 H181 FII sing 108 n n C18 H182 FII sing 109 n n C18 H183 FII sing 110 n n C22 C23 FII sing 111 n n C22 H221 FII sing 112 n n C23 C24 FII sing 113 n n C23 H231 FII sing 114 n n C23 H232 FII sing 115 n n C24 C27 FII sing 116 n n C24 H241 FII sing 117 n n C24 H242 FII sing 118 n n C27 C30 FII sing 119 n n C27 C34 FII doub 120 e n C30 H301 FII sing 121 n n C30 H302 FII sing 122 n n C30 H303 FII sing 123 n n C34 C35 FII sing 124 n n C34 H341 FII sing 125 n n C35 O36 FII sing 126 n n C35 H351 FII sing 127 n n C35 H352 FII sing 128 n n O36 N42 FII sing 129 n n N42 C43 FII sing 130 n n N42 HN1 FII sing 131 n n C43 O44 FII doub 132 n n C43 C45 FII sing 133 n n C45 P46 FII sing 134 n n C45 H451 FII sing 135 n n C45 H452 FII sing 136 n n P46 O49 FII doub 137 n n P46 O50 FII sing 138 n n P46 O51 FII sing 139 n n O50 H501 FII sing 140 n n O51 H511 FII sing 141 n n # _atom_sites.entry_id 1D8E _atom_sites.fract_transf_matrix[1][1] 0.005834 _atom_sites.fract_transf_matrix[1][2] 0.003368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT B 1 3002 3002 ACT ACT . E 5 FII B 1 3003 1 FII FII . F 6 HOH A 1 1004 1004 HOH HOH . F 6 HOH A 2 1007 1007 HOH HOH . F 6 HOH A 3 1008 1008 HOH HOH . F 6 HOH A 4 1012 1012 HOH HOH . F 6 HOH A 5 1014 1014 HOH HOH . F 6 HOH A 6 1016 1016 HOH HOH . F 6 HOH A 7 1018 1018 HOH HOH . F 6 HOH A 8 1019 1019 HOH HOH . F 6 HOH A 9 1020 1020 HOH HOH . F 6 HOH A 10 1021 1021 HOH HOH . F 6 HOH A 11 1022 1022 HOH HOH . F 6 HOH A 12 1027 1027 HOH HOH . F 6 HOH A 13 1029 1029 HOH HOH . F 6 HOH A 14 1030 1030 HOH HOH . F 6 HOH A 15 1035 1035 HOH HOH . F 6 HOH A 16 1036 1036 HOH HOH . F 6 HOH A 17 1040 1040 HOH HOH . F 6 HOH A 18 1042 1042 HOH HOH . F 6 HOH A 19 1044 1044 HOH HOH . F 6 HOH A 20 1047 1047 HOH HOH . F 6 HOH A 21 1049 1049 HOH HOH . F 6 HOH A 22 1051 1051 HOH HOH . F 6 HOH A 23 1060 1060 HOH HOH . F 6 HOH A 24 1061 1061 HOH HOH . F 6 HOH A 25 1062 1062 HOH HOH . F 6 HOH A 26 1063 1063 HOH HOH . F 6 HOH A 27 1067 1067 HOH HOH . F 6 HOH A 28 1071 1071 HOH HOH . F 6 HOH A 29 1072 1072 HOH HOH . F 6 HOH A 30 1075 1075 HOH HOH . F 6 HOH A 31 1077 1077 HOH HOH . F 6 HOH A 32 1080 1080 HOH HOH . F 6 HOH A 33 1082 1082 HOH HOH . F 6 HOH A 34 1083 1083 HOH HOH . F 6 HOH A 35 1085 1085 HOH HOH . F 6 HOH A 36 1087 1087 HOH HOH . F 6 HOH A 37 1089 1089 HOH HOH . F 6 HOH A 38 1106 1106 HOH HOH . F 6 HOH A 39 1150 1150 HOH HOH . G 6 HOH B 1 1003 1003 HOH HOH . G 6 HOH B 2 1005 1005 HOH HOH . G 6 HOH B 3 1006 1006 HOH HOH . G 6 HOH B 4 1009 1009 HOH HOH . G 6 HOH B 5 1010 1010 HOH HOH . G 6 HOH B 6 1011 1011 HOH HOH . G 6 HOH B 7 1013 1013 HOH HOH . G 6 HOH B 8 1015 1015 HOH HOH . G 6 HOH B 9 1017 1017 HOH HOH . G 6 HOH B 10 1026 1026 HOH HOH . G 6 HOH B 11 1028 1028 HOH HOH . G 6 HOH B 12 1031 1031 HOH HOH . G 6 HOH B 13 1034 1034 HOH HOH . G 6 HOH B 14 1038 1038 HOH HOH . G 6 HOH B 15 1039 1039 HOH HOH . G 6 HOH B 16 1041 1041 HOH HOH . G 6 HOH B 17 1045 1045 HOH HOH . G 6 HOH B 18 1046 1046 HOH HOH . G 6 HOH B 19 1048 1048 HOH HOH . G 6 HOH B 20 1053 1053 HOH HOH . G 6 HOH B 21 1054 1054 HOH HOH . G 6 HOH B 22 1056 1056 HOH HOH . G 6 HOH B 23 1059 1059 HOH HOH . G 6 HOH B 24 1064 1064 HOH HOH . G 6 HOH B 25 1069 1069 HOH HOH . G 6 HOH B 26 1070 1070 HOH HOH . G 6 HOH B 27 1074 1074 HOH HOH . G 6 HOH B 28 1079 1079 HOH HOH . G 6 HOH B 29 1086 1086 HOH HOH . G 6 HOH B 30 1088 1088 HOH HOH . G 6 HOH B 31 1104 1104 HOH HOH . G 6 HOH B 32 1140 1140 HOH HOH . G 6 HOH B 33 1170 1170 HOH HOH . G 6 HOH B 34 1172 1172 HOH HOH . G 6 HOH B 35 1173 1173 HOH HOH . H 6 HOH P 1 1171 1171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FII . . . E 5 97.333 26.493 34.439 1 7.33 ? C1 FII 3003 B 1 HETATM 2 C C2 FII . . . E 5 97.441 27.655 33.471 1 9.63 ? C2 FII 3003 B 1 HETATM 3 C C6 FII . . . E 5 96.121 28.339 33.221 1 10.19 ? C6 FII 3003 B 1 HETATM 4 C C10 FII . . . E 5 98.589 28.067 32.873 1 11 ? C10 FII 3003 B 1 HETATM 5 C C11 FII . . . E 5 99.963 27.447 33.059 1 13.6 ? C11 FII 3003 B 1 HETATM 6 C C12 FII . . . E 5 100.663 27.324 31.729 1 13.14 ? C12 FII 3003 B 1 HETATM 7 C C15 FII . . . E 5 102.073 26.848 31.831 1 20.08 ? C15 FII 3003 B 1 HETATM 8 C C18 FII . . . E 5 102.677 26.603 30.46 1 20.89 ? C18 FII 3003 B 1 HETATM 9 C C22 FII . . . E 5 102.771 26.645 33.012 1 24.87 ? C22 FII 3003 B 1 HETATM 10 C C23 FII . . . E 5 104.225 26.151 33.047 1 24.52 ? C23 FII 3003 B 1 HETATM 11 C C24 FII . . . E 5 104.673 25.678 34.417 1 24.12 ? C24 FII 3003 B 1 HETATM 12 C C27 FII . . . E 5 106.127 25.275 34.424 1 30.55 ? C27 FII 3003 B 1 HETATM 13 C C30 FII . . . E 5 107.085 26.381 34.035 1 31.5 ? C30 FII 3003 B 1 HETATM 14 C C34 FII . . . E 5 106.545 24.036 34.752 1 36.25 ? C34 FII 3003 B 1 HETATM 15 C C35 FII . . . E 5 108.007 23.606 34.768 1 42.91 ? C35 FII 3003 B 1 HETATM 16 O O36 FII . . . E 5 108.225 22.604 33.81 1 47.36 ? O36 FII 3003 B 1 HETATM 17 N N42 FII . . . E 5 108.043 23.14 32.527 1 43.43 ? N42 FII 3003 B 1 HETATM 18 C C43 FII . . . E 5 109.064 23.125 31.669 1 39.63 ? C43 FII 3003 B 1 HETATM 19 O O44 FII . . . E 5 110.243 22.954 31.976 1 41.05 ? O44 FII 3003 B 1 HETATM 20 C C45 FII . . . E 5 108.624 23.261 30.223 1 38.31 ? C45 FII 3003 B 1 HETATM 21 P P46 FII . . . E 5 109.816 24.257 29.311 1 38.82 ? P46 FII 3003 B 1 HETATM 22 O O49 FII . . . E 5 109.257 24.581 28.012 1 37.49 ? O49 FII 3003 B 1 HETATM 23 O O50 FII . . . E 5 111.066 23.508 29.133 1 35.34 ? O50 FII 3003 B 1 HETATM 24 O O51 FII . . . E 5 110.079 25.48 30.068 1 38.09 ? O51 FII 3003 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 552 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #