data_1D8F # _model_server_result.job_id vGrhOh-NtKeejDfiPChZNg _model_server_result.datetime_utc '2024-12-26 12:03:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 1D8F # _exptl.entry_id 1D8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D8F _cell.length_a 38.27 _cell.length_b 78.54 _cell.length_c 106.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1 B,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 N O HOH . A HOH 5 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc2 N O HOH . A HOH 22 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.365 ? metalc ? metalc3 A OD2 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc4 A OD1 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 A O ASP 59 A ASP 141 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 A NE2 HIS 69 A HIS 151 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 A OD2 ASP 71 A ASP 153 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc8 A OD1 ASP 76 A ASP 158 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc9 A O GLY 77 A GLY 159 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 A O GLY 79 A GLY 161 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc11 A O VAL 81 A VAL 163 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc12 A NE2 HIS 84 A HIS 166 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc13 A O GLY 91 A GLY 173 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc14 A O ASN 93 A ASN 175 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc15 A OD1 ASP 95 A ASP 177 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc16 A ND1 HIS 97 A HIS 179 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc17 A OD2 ASP 99 A ASP 181 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc18 A O ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc19 A OD1 ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc20 A OE2 GLU 102 A GLU 184 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc21 A O GLU 102 A GLU 184 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc22 A NE2 HIS 119 A HIS 201 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc23 A NE2 HIS 123 A HIS 205 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc24 A NE2 HIS 129 A HIS 211 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc25 C ZN ZN . A ZN 301 1_555 B O THR 173 B THR 755 2_464 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc26 O O HOH . B HOH 10 1_555 L CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc27 B OD2 ASP 25 B ASP 607 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc28 B OD1 ASP 25 B ASP 607 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc29 B O ASP 59 B ASP 641 1_555 L CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc30 B NE2 HIS 69 B HIS 651 1_555 I ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc31 B OD2 ASP 71 B ASP 653 1_555 I ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc32 B OD1 ASP 76 B ASP 658 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc33 B O GLY 77 B GLY 659 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc34 B O GLY 79 B GLY 661 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc35 B O VAL 81 B VAL 663 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc36 B NE2 HIS 84 B HIS 666 1_555 I ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc37 B O GLY 91 B GLY 673 1_555 L CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc38 B O ASN 93 B ASN 675 1_555 L CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc39 B OD1 ASP 95 B ASP 677 1_555 L CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc40 B ND1 HIS 97 B HIS 679 1_555 I ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc41 B OD2 ASP 99 B ASP 681 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc42 B OD1 ASP 100 B ASP 682 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc43 B O ASP 100 B ASP 682 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc44 B OE2 GLU 102 B GLU 684 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc45 B O GLU 102 B GLU 684 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc46 B NE2 HIS 119 B HIS 701 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc47 B NE2 HIS 123 B HIS 705 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc48 B NE2 HIS 129 B HIS 711 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc49 H ZN ZN . B ZN 801 1_555 M OA SPI . B SPI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc50 H ZN ZN . B ZN 801 1_555 M OB SPI . B SPI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D8F _atom_sites.fract_transf_matrix[1][1] 0.02613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 301 ZN MZN . D 2 ZN A 1 302 302 ZN MZN . E 3 CA A 1 303 303 CA CAL . F 3 CA A 1 304 304 CA CAL . G 3 CA A 1 305 305 CA CAL . H 2 ZN B 1 801 801 ZN MZN . I 2 ZN B 1 802 802 ZN MZN . J 3 CA B 1 803 803 CA CAL . K 3 CA B 1 804 804 CA CAL . L 3 CA B 1 805 805 CA CAL . M 4 SPI B 1 901 901 SPI INH . N 5 HOH A 1 1 1 HOH HOH . N 5 HOH A 2 5 5 HOH HOH . N 5 HOH A 3 6 6 HOH HOH . N 5 HOH A 4 7 7 HOH HOH . N 5 HOH A 5 8 8 HOH HOH . N 5 HOH A 6 9 9 HOH HOH . N 5 HOH A 7 13 13 HOH HOH . N 5 HOH A 8 16 16 HOH HOH . N 5 HOH A 9 19 19 HOH HOH . N 5 HOH A 10 22 22 HOH HOH . N 5 HOH A 11 23 23 HOH HOH . N 5 HOH A 12 25 25 HOH HOH . N 5 HOH A 13 32 32 HOH HOH . O 5 HOH B 1 2 2 HOH HOH . O 5 HOH B 2 3 3 HOH HOH . O 5 HOH B 3 4 4 HOH HOH . O 5 HOH B 4 10 10 HOH HOH . O 5 HOH B 5 11 11 HOH HOH . O 5 HOH B 6 12 12 HOH HOH . O 5 HOH B 7 14 14 HOH HOH . O 5 HOH B 8 15 15 HOH HOH . O 5 HOH B 9 17 17 HOH HOH . O 5 HOH B 10 18 18 HOH HOH . O 5 HOH B 11 20 20 HOH HOH . O 5 HOH B 12 21 21 HOH HOH . O 5 HOH B 13 24 24 HOH HOH . O 5 HOH B 14 26 26 HOH HOH . O 5 HOH B 15 27 27 HOH HOH . O 5 HOH B 16 28 28 HOH HOH . O 5 HOH B 17 29 29 HOH HOH . O 5 HOH B 18 30 30 HOH HOH . O 5 HOH B 19 31 31 HOH HOH . O 5 HOH B 20 33 33 HOH HOH . O 5 HOH B 21 34 34 HOH HOH . O 5 HOH B 22 35 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.831 _atom_site.Cartn_y 24.814 _atom_site.Cartn_z 44.779 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 5.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #