data_1D8X # _model_server_result.job_id 31iKPxm-EBppWEGOEUqMEQ _model_server_result.datetime_utc '2025-03-03 00:09:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":21}' # _entry.id 1D8X # _exptl.entry_id 1D8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.38 _cell.angle_gamma 90 _cell.entry_id 1D8X _cell.length_a 62.784 _cell.length_b 35.685 _cell.length_c 22.466 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D8X _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OP2 DA 5 A DA 5 1_555 C MG MG . A MG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc2 A OP1 DG 9 A DG 9 1_555 D MG MG . A MG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 C MG MG . A MG 22 1_555 F O HOH . A HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 C MG MG . A MG 22 1_555 F O HOH . A HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 C MG MG . A MG 22 1_555 F O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc6 C MG MG . A MG 22 1_555 F O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 C MG MG . A MG 22 1_555 F O HOH . A HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc8 D MG MG . A MG 23 1_555 F O HOH . A HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 D MG MG . A MG 23 1_555 F O HOH . A HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc10 D MG MG . A MG 23 1_555 F O HOH . A HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc11 D MG MG . A MG 23 1_555 F O HOH . A HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc12 D MG MG . A MG 23 1_555 F O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog7 A N2 DG 3 A DG 3 1_555 B N7 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog8 A N3 DG 3 A DG 3 1_555 B N6 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog9 A N6 DA 4 A DA 4 1_555 B N3 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog10 A N7 DA 4 A DA 4 1_555 B N2 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 5 A DA 5 1_555 B N3 DT 6 B DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 5 A DA 5 1_555 B O4 DT 6 B DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 6 A DT 6 1_555 B N1 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 6 A DT 6 1_555 B N6 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog15 A N2 DG 7 A DG 7 1_555 B N7 DA 4 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog16 A N3 DG 7 A DG 7 1_555 B N6 DA 4 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog17 A N6 DA 8 A DA 8 1_555 B N3 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog18 A N7 DA 8 A DA 8 1_555 B N2 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 10 A DG 10 1_555 B N4 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 152 n n CO N2 NCO sing 153 n n CO N3 NCO sing 154 n n CO N4 NCO sing 155 n n CO N5 NCO sing 156 n n CO N6 NCO sing 157 n n N1 HN11 NCO sing 158 n n N1 HN12 NCO sing 159 n n N1 HN13 NCO sing 160 n n N2 HN21 NCO sing 161 n n N2 HN22 NCO sing 162 n n N2 HN23 NCO sing 163 n n N3 HN31 NCO sing 164 n n N3 HN32 NCO sing 165 n n N3 HN33 NCO sing 166 n n N4 HN41 NCO sing 167 n n N4 HN42 NCO sing 168 n n N4 HN43 NCO sing 169 n n N5 HN51 NCO sing 170 n n N5 HN52 NCO sing 171 n n N5 HN53 NCO sing 172 n n N6 HN61 NCO sing 173 n n N6 HN62 NCO sing 174 n n N6 HN63 NCO sing 175 n n # _atom_sites.entry_id 1D8X _atom_sites.fract_transf_matrix[1][1] 0.015928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004084 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.045951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 22 22 MG MO5 . D 2 MG A 1 23 23 MG MO5 . E 3 NCO A 1 21 21 NCO NCO . F 4 HOH A 1 100 100 HOH HOH . F 4 HOH A 2 101 101 HOH HOH . F 4 HOH A 3 102 102 HOH HOH . F 4 HOH A 4 105 105 HOH HOH . F 4 HOH A 5 107 107 HOH HOH . F 4 HOH A 6 110 110 HOH HOH . F 4 HOH A 7 111 111 HOH HOH . F 4 HOH A 8 114 114 HOH HOH . F 4 HOH A 9 115 115 HOH HOH . F 4 HOH A 10 116 116 HOH HOH . F 4 HOH A 11 117 117 HOH HOH . F 4 HOH A 12 118 118 HOH HOH . F 4 HOH A 13 119 119 HOH HOH . F 4 HOH A 14 120 120 HOH HOH . F 4 HOH A 15 121 121 HOH HOH . F 4 HOH A 16 122 122 HOH HOH . F 4 HOH A 17 123 123 HOH HOH . F 4 HOH A 18 124 124 HOH HOH . F 4 HOH A 19 126 126 HOH HOH . F 4 HOH A 20 131 131 HOH HOH . F 4 HOH A 21 134 134 HOH HOH . F 4 HOH A 22 135 135 HOH HOH . F 4 HOH A 23 137 137 HOH HOH . F 4 HOH A 24 140 140 HOH HOH . F 4 HOH A 25 143 143 HOH HOH . F 4 HOH A 26 144 144 HOH HOH . F 4 HOH A 27 146 146 HOH HOH . F 4 HOH A 28 147 147 HOH HOH . F 4 HOH A 29 148 148 HOH HOH . F 4 HOH A 30 152 152 HOH HOH . F 4 HOH A 31 155 155 HOH HOH . F 4 HOH A 32 156 156 HOH HOH . F 4 HOH A 33 157 157 HOH HOH . F 4 HOH A 34 158 158 HOH HOH . F 4 HOH A 35 160 160 HOH HOH . F 4 HOH A 36 161 161 HOH HOH . F 4 HOH A 37 162 162 HOH HOH . F 4 HOH A 38 165 165 HOH HOH . F 4 HOH A 39 167 167 HOH HOH . F 4 HOH A 40 168 168 HOH HOH . F 4 HOH A 41 170 170 HOH HOH . F 4 HOH A 42 171 171 HOH HOH . F 4 HOH A 43 172 172 HOH HOH . F 4 HOH A 44 173 173 HOH HOH . F 4 HOH A 45 174 174 HOH HOH . F 4 HOH A 46 175 175 HOH HOH . F 4 HOH A 47 176 176 HOH HOH . F 4 HOH A 48 178 178 HOH HOH . F 4 HOH A 49 183 183 HOH HOH . F 4 HOH A 50 184 184 HOH HOH . F 4 HOH A 51 185 185 HOH HOH . F 4 HOH A 52 188 188 HOH HOH . F 4 HOH A 53 190 190 HOH HOH . F 4 HOH A 54 191 191 HOH HOH . F 4 HOH A 55 192 192 HOH HOH . F 4 HOH A 56 193 193 HOH HOH . F 4 HOH A 57 195 195 HOH HOH . F 4 HOH A 58 199 199 HOH HOH . F 4 HOH A 59 200 200 HOH HOH . F 4 HOH A 60 201 201 HOH HOH . F 4 HOH A 61 202 202 HOH HOH . F 4 HOH A 62 204 204 HOH HOH . F 4 HOH A 63 206 206 HOH HOH . F 4 HOH A 64 208 208 HOH HOH . F 4 HOH A 65 209 209 HOH HOH . F 4 HOH A 66 210 210 HOH HOH . F 4 HOH A 67 211 211 HOH HOH . F 4 HOH A 68 213 213 HOH HOH . F 4 HOH A 69 214 214 HOH HOH . F 4 HOH A 70 215 215 HOH HOH . F 4 HOH A 71 217 217 HOH HOH . F 4 HOH A 72 221 221 HOH HOH . F 4 HOH A 73 224 224 HOH HOH . F 4 HOH A 74 225 225 HOH HOH . F 4 HOH A 75 228 22 HOH MO5 . F 4 HOH A 76 229 22 HOH MO5 . F 4 HOH A 77 230 22 HOH MO5 . F 4 HOH A 78 231 22 HOH MO5 . F 4 HOH A 79 232 22 HOH MO5 . F 4 HOH A 80 233 23 HOH MO5 . F 4 HOH A 81 234 23 HOH MO5 . F 4 HOH A 82 235 23 HOH MO5 . F 4 HOH A 83 236 23 HOH MO5 . F 4 HOH A 84 237 23 HOH MO5 . G 4 HOH B 1 103 103 HOH HOH . G 4 HOH B 2 104 104 HOH HOH . G 4 HOH B 3 106 106 HOH HOH . G 4 HOH B 4 108 108 HOH HOH . G 4 HOH B 5 109 109 HOH HOH . G 4 HOH B 6 112 112 HOH HOH . G 4 HOH B 7 113 113 HOH HOH . G 4 HOH B 8 125 125 HOH HOH . G 4 HOH B 9 127 127 HOH HOH . G 4 HOH B 10 128 128 HOH HOH . G 4 HOH B 11 129 129 HOH HOH . G 4 HOH B 12 130 130 HOH HOH . G 4 HOH B 13 132 132 HOH HOH . G 4 HOH B 14 133 133 HOH HOH . G 4 HOH B 15 136 136 HOH HOH . G 4 HOH B 16 138 138 HOH HOH . G 4 HOH B 17 139 139 HOH HOH . G 4 HOH B 18 141 141 HOH HOH . G 4 HOH B 19 142 142 HOH HOH . G 4 HOH B 20 145 145 HOH HOH . G 4 HOH B 21 149 149 HOH HOH . G 4 HOH B 22 150 150 HOH HOH . G 4 HOH B 23 151 151 HOH HOH . G 4 HOH B 24 153 153 HOH HOH . G 4 HOH B 25 154 154 HOH HOH . G 4 HOH B 26 159 159 HOH HOH . G 4 HOH B 27 163 163 HOH HOH . G 4 HOH B 28 164 164 HOH HOH . G 4 HOH B 29 166 166 HOH HOH . G 4 HOH B 30 169 169 HOH HOH . G 4 HOH B 31 177 177 HOH HOH . G 4 HOH B 32 179 179 HOH HOH . G 4 HOH B 33 180 180 HOH HOH . G 4 HOH B 34 181 181 HOH HOH . G 4 HOH B 35 182 182 HOH HOH . G 4 HOH B 36 186 186 HOH HOH . G 4 HOH B 37 187 187 HOH HOH . G 4 HOH B 38 189 189 HOH HOH . G 4 HOH B 39 194 194 HOH HOH . G 4 HOH B 40 196 196 HOH HOH . G 4 HOH B 41 197 197 HOH HOH . G 4 HOH B 42 198 198 HOH HOH . G 4 HOH B 43 203 203 HOH HOH . G 4 HOH B 44 205 205 HOH HOH . G 4 HOH B 45 207 207 HOH HOH . G 4 HOH B 46 212 212 HOH HOH . G 4 HOH B 47 216 216 HOH HOH . G 4 HOH B 48 218 218 HOH HOH . G 4 HOH B 49 219 219 HOH HOH . G 4 HOH B 50 220 220 HOH HOH . G 4 HOH B 51 222 222 HOH HOH . G 4 HOH B 52 223 223 HOH HOH . G 4 HOH B 53 226 226 HOH HOH . G 4 HOH B 54 227 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . E 3 12.762 0.076 16.331 1 26.5 ? CO NCO 21 A 1 HETATM 2 N N1 NCO . . . E 3 13.429 -1.195 14.975 1 48.46 ? N1 NCO 21 A 1 HETATM 3 N N2 NCO . . . E 3 12.114 1.401 17.689 1 23.11 ? N2 NCO 21 A 1 HETATM 4 N N3 NCO . . . E 3 13.107 1.587 15.081 1 24.28 ? N3 NCO 21 A 1 HETATM 5 N N4 NCO . . . E 3 14.626 0.322 17.019 1 27.32 ? N4 NCO 21 A 1 HETATM 6 N N5 NCO . . . E 3 12.488 -1.408 17.639 1 28.07 ? N5 NCO 21 A 1 HETATM 7 N N6 NCO . . . E 3 10.913 -0.149 15.686 1 40.42 ? N6 NCO 21 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #