data_1D9F # _model_server_result.job_id SRk70eF2izarr5pbqwvhZQ _model_server_result.datetime_utc '2025-02-05 17:00:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1D9F # _exptl.entry_id 1D9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D9F _cell.length_a 102.65 _cell.length_b 102.65 _cell.length_c 86.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D9F _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DT 2 B DT 1002 1_555 A P U31 3 B U31 1003 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.591 ? covale ? covale2 A O3' DT 2 B DT 1002 1_555 A P U31 3 B U31 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.592 ? covale ? covale3 A O3' U31 3 B U31 1003 1_555 A P DT 4 B DT 1004 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.625 ? covale ? covale4 A O3' U31 3 B U31 1003 1_555 A P DT 4 B DT 1004 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.617 ? metalc ? metalc1 A OP1 DT 4 B DT 1004 1_555 C ZN ZN . A ZN 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 B OE2 GLU 34 A GLU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1D9F _atom_sites.fract_transf_matrix[1][1] 0.009742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1 1 ZN ZN . D 4 SO4 A 1 32 32 SO4 SO4 . E 4 SO4 A 1 38 38 SO4 SO4 . F 4 SO4 A 1 40 40 SO4 SO4 . G 4 SO4 A 1 94 94 SO4 SO4 . H 5 HOH B 1 15 15 HOH TIP . I 5 HOH A 1 7 7 HOH TIP . I 5 HOH A 2 10 10 HOH TIP . I 5 HOH A 3 14 14 HOH TIP . I 5 HOH A 4 20 20 HOH TIP . I 5 HOH A 5 22 22 HOH TIP . I 5 HOH A 6 29 29 HOH TIP . I 5 HOH A 7 30 30 HOH TIP . I 5 HOH A 8 49 49 HOH TIP . I 5 HOH A 9 50 50 HOH TIP . I 5 HOH A 10 53 53 HOH TIP . I 5 HOH A 11 56 56 HOH TIP . I 5 HOH A 12 60 60 HOH TIP . I 5 HOH A 13 78 78 HOH TIP . I 5 HOH A 14 79 79 HOH TIP . I 5 HOH A 15 82 82 HOH TIP . I 5 HOH A 16 84 84 HOH TIP . I 5 HOH A 17 85 85 HOH TIP . I 5 HOH A 18 89 89 HOH TIP . I 5 HOH A 19 97 97 HOH TIP . I 5 HOH A 20 98 98 HOH TIP . I 5 HOH A 21 114 114 HOH TIP . I 5 HOH A 22 119 119 HOH TIP . I 5 HOH A 23 128 128 HOH TIP . I 5 HOH A 24 137 137 HOH TIP . I 5 HOH A 25 139 139 HOH TIP . I 5 HOH A 26 161 161 HOH TIP . I 5 HOH A 27 169 169 HOH TIP . I 5 HOH A 28 175 175 HOH TIP . I 5 HOH A 29 184 184 HOH TIP . I 5 HOH A 30 185 185 HOH TIP . I 5 HOH A 31 187 187 HOH TIP . I 5 HOH A 32 193 193 HOH TIP . I 5 HOH A 33 195 195 HOH TIP . I 5 HOH A 34 201 201 HOH TIP . I 5 HOH A 35 203 203 HOH TIP . I 5 HOH A 36 225 225 HOH TIP . I 5 HOH A 37 320 320 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 69.752 _atom_site.Cartn_y 64.018 _atom_site.Cartn_z -9.263 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 31.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #