data_1D9I # _model_server_result.job_id 0JDmtNt4gaRZm8UUNby9nQ _model_server_result.datetime_utc '2024-12-27 00:58:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":380}' # _entry.id 1D9I # _exptl.entry_id 1D9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.561 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-N-[(trans-4-aminocyclohexyl)methyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.7 _cell.angle_gamma 90 _cell.entry_id 1D9I _cell.length_a 71.46 _cell.length_b 72.19 _cell.length_c 73.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 1 1_555 A SG CYS 149 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 58 A CYS 42 1_555 A SG CYS 74 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 203 A CYS 168 1_555 A SG CYS 217 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 231 A CYS 191 1_555 A SG CYS 261 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B C GLU 8 I GLU 362 1_555 B N TYS 9 I TYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale2 B C TYS 9 I TYS 363 1_555 B N LEU 10 I LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? metalc ? metalc1 A O LYS 204 A LYS 169 1_555 C NA NA . A NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A O THR 207 A THR 172 1_555 C NA NA . A NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc3 A O PHE 245 A PHE 204 4_546 C NA NA . A NA 950 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 A O LYS 266 A LYS 224 1_555 D NA NA . A NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'C22 H29 N5 O5 S' _chem_comp.formula_weight 475.561 _chem_comp.id 00P _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-N-[(trans-4-aminocyclohexyl)methyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 00P sing 1 n n C1 N1 00P sing 2 n n C1 H1 00P sing 3 n n C1 H1A 00P sing 4 n n C18 N1 00P sing 5 n n N1 HN1 00P sing 6 n n C7 C2 00P sing 7 n n C2 C3 00P sing 8 n n C2 H2 00P sing 9 n n C5 N2 00P sing 10 n n N2 HN2 00P sing 11 n n N2 HN2A 00P sing 12 n n C3 C4 00P sing 13 n n C3 H3 00P sing 14 n n C3 H3A 00P sing 15 n n C5 C4 00P sing 16 n n C4 H4 00P sing 17 n n C4 H4A 00P sing 18 n n C6 C5 00P sing 19 n n C5 H5 00P sing 20 n n C7 C6 00P sing 21 n n C6 H6 00P sing 22 n n C6 H6A 00P sing 23 n n C7 H7 00P sing 24 n n C7 H7A 00P sing 25 n n C08 N07 00P sing 26 n n C12 N07 00P sing 27 n n N07 C31 00P sing 28 n n N10 C08 00P sing 29 n n O09 C08 00P doub 30 n n C14 N10 00P sing 31 n n N10 N11 00P sing 32 n n C17 N11 00P sing 33 n n N11 C12 00P sing 34 n n C12 O13 00P doub 35 n n C15 C14 00P sing 36 n n C14 H14 00P sing 37 n n C14 H14A 00P sing 38 n n C15 C16 00P doub 39 n n C15 H15 00P sing 40 n n C16 C17 00P sing 41 n n C16 H16 00P sing 42 n n C18 C17 00P sing 43 n n C17 H17 00P sing 44 n n O19 C18 00P doub 45 n n C31 C32 00P sing 46 n n C31 H31 00P sing 47 n n C31 H31A 00P sing 48 n n C32 S33 00P sing 49 n n C32 H32 00P sing 50 n n C32 H32A 00P sing 51 n n O35 S33 00P doub 52 n n C36 S33 00P sing 53 n n S33 O34 00P doub 54 n n C41 C36 00P doub 55 n y C36 C37 00P sing 56 n y C38 C37 00P doub 57 n y C37 H37 00P sing 58 n n C39 C38 00P sing 59 n y C38 H38 00P sing 60 n n C40 C39 00P doub 61 n y C39 H39 00P sing 62 n n C40 C41 00P sing 63 n y C40 H40 00P sing 64 n n C41 H41 00P sing 65 n n # _atom_sites.entry_id 1D9I _atom_sites.fract_transf_matrix[1][1] 0.013994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002644 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 950 950 NA NA . D 3 NA A 1 951 951 NA NA . E 4 00P A 1 380 380 00P 00P . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 405 405 HOH HOH . F 5 HOH A 5 406 406 HOH HOH . F 5 HOH A 6 407 407 HOH HOH . F 5 HOH A 7 408 408 HOH HOH . F 5 HOH A 8 409 409 HOH HOH . F 5 HOH A 9 412 412 HOH HOH . F 5 HOH A 10 413 413 HOH HOH . F 5 HOH A 11 416 416 HOH HOH . F 5 HOH A 12 418 418 HOH HOH . F 5 HOH A 13 419 419 HOH HOH . F 5 HOH A 14 420 420 HOH HOH . F 5 HOH A 15 421 421 HOH HOH . F 5 HOH A 16 422 422 HOH HOH . F 5 HOH A 17 426 426 HOH HOH . F 5 HOH A 18 428 428 HOH HOH . F 5 HOH A 19 429 429 HOH HOH . F 5 HOH A 20 430 430 HOH HOH . F 5 HOH A 21 431 431 HOH HOH . F 5 HOH A 22 435 435 HOH HOH . F 5 HOH A 23 436 436 HOH HOH . F 5 HOH A 24 437 437 HOH HOH . F 5 HOH A 25 440 440 HOH HOH . F 5 HOH A 26 442 442 HOH HOH . F 5 HOH A 27 445 445 HOH HOH . F 5 HOH A 28 449 449 HOH HOH . F 5 HOH A 29 450 450 HOH HOH . F 5 HOH A 30 451 451 HOH HOH . F 5 HOH A 31 457 457 HOH HOH . F 5 HOH A 32 461 461 HOH HOH . F 5 HOH A 33 463 463 HOH HOH . F 5 HOH A 34 465 465 HOH HOH . F 5 HOH A 35 466 466 HOH HOH . F 5 HOH A 36 471 471 HOH HOH . F 5 HOH A 37 477 477 HOH HOH . F 5 HOH A 38 482 482 HOH HOH . F 5 HOH A 39 483 483 HOH HOH . F 5 HOH A 40 490 490 HOH HOH . F 5 HOH A 41 491 491 HOH HOH . F 5 HOH A 42 494 494 HOH HOH . F 5 HOH A 43 495 495 HOH HOH . F 5 HOH A 44 497 497 HOH HOH . F 5 HOH A 45 498 498 HOH HOH . F 5 HOH A 46 501 501 HOH HOH . F 5 HOH A 47 503 503 HOH HOH . F 5 HOH A 48 515 515 HOH HOH . F 5 HOH A 49 519 519 HOH HOH . F 5 HOH A 50 522 522 HOH HOH . F 5 HOH A 51 523 523 HOH HOH . F 5 HOH A 52 525 525 HOH HOH . F 5 HOH A 53 527 527 HOH HOH . F 5 HOH A 54 535 535 HOH HOH . F 5 HOH A 55 551 551 HOH HOH . F 5 HOH A 56 555 555 HOH HOH . F 5 HOH A 57 557 557 HOH HOH . F 5 HOH A 58 566 566 HOH HOH . F 5 HOH A 59 575 575 HOH HOH . F 5 HOH A 60 601 601 HOH HOH . F 5 HOH A 61 602 602 HOH HOH . F 5 HOH A 62 603 603 HOH HOH . F 5 HOH A 63 604 604 HOH HOH . F 5 HOH A 64 605 605 HOH HOH . F 5 HOH A 65 607 607 HOH HOH . F 5 HOH A 66 608 608 HOH HOH . F 5 HOH A 67 609 609 HOH HOH . F 5 HOH A 68 610 610 HOH HOH . F 5 HOH A 69 612 612 HOH HOH . F 5 HOH A 70 613 613 HOH HOH . F 5 HOH A 71 615 615 HOH HOH . F 5 HOH A 72 616 616 HOH HOH . F 5 HOH A 73 618 618 HOH HOH . F 5 HOH A 74 619 619 HOH HOH . F 5 HOH A 75 620 620 HOH HOH . F 5 HOH A 76 621 621 HOH HOH . F 5 HOH A 77 623 623 HOH HOH . F 5 HOH A 78 625 625 HOH HOH . F 5 HOH A 79 626 626 HOH HOH . F 5 HOH A 80 628 628 HOH HOH . F 5 HOH A 81 631 631 HOH HOH . F 5 HOH A 82 632 632 HOH HOH . F 5 HOH A 83 633 633 HOH HOH . F 5 HOH A 84 634 634 HOH HOH . F 5 HOH A 85 635 635 HOH HOH . F 5 HOH A 86 636 636 HOH HOH . F 5 HOH A 87 637 637 HOH HOH . F 5 HOH A 88 639 639 HOH HOH . F 5 HOH A 89 640 640 HOH HOH . F 5 HOH A 90 642 642 HOH HOH . F 5 HOH A 91 643 643 HOH HOH . F 5 HOH A 92 644 644 HOH HOH . F 5 HOH A 93 646 646 HOH HOH . F 5 HOH A 94 647 647 HOH HOH . G 5 HOH I 1 467 467 HOH HOH . G 5 HOH I 2 617 617 HOH HOH . G 5 HOH I 3 629 629 HOH HOH . G 5 HOH I 4 630 630 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 00P . . . E 4 14.634 -11.362 20.595 1 46.75 ? C1 00P 380 A 1 HETATM 2 N N1 00P . . . E 4 15.564 -12.177 21.376 1 47.12 ? N1 00P 380 A 1 HETATM 3 C C2 00P . . . E 4 13.147 -11.294 21.101 1 46.12 ? C2 00P 380 A 1 HETATM 4 N N2 00P . . . E 4 10.329 -12.847 24.171 1 44.35 ? N2 00P 380 A 1 HETATM 5 C C3 00P . . . E 4 13.062 -10.694 22.54 1 46.36 ? C3 00P 380 A 1 HETATM 6 C C4 00P . . . E 4 11.693 -10.939 23.267 1 45.83 ? C4 00P 380 A 1 HETATM 7 C C5 00P . . . E 4 11.393 -12.461 23.234 1 44.98 ? C5 00P 380 A 1 HETATM 8 C C6 00P . . . E 4 11.101 -12.818 21.77 1 45.55 ? C6 00P 380 A 1 HETATM 9 C C7 00P . . . E 4 12.415 -12.667 20.944 1 46.16 ? C7 00P 380 A 1 HETATM 10 N N07 00P . . . E 4 17.945 -15.954 23.487 1 45.78 ? N07 00P 380 A 1 HETATM 11 C C08 00P . . . E 4 19.04 -16.196 22.651 1 45.93 ? C08 00P 380 A 1 HETATM 12 O O09 00P . . . E 4 19.745 -17.2 22.588 1 44.4 ? O09 00P 380 A 1 HETATM 13 N N10 00P . . . E 4 19.201 -15.053 21.859 1 46.26 ? N10 00P 380 A 1 HETATM 14 N N11 00P . . . E 4 18.207 -14.146 22.211 1 46.35 ? N11 00P 380 A 1 HETATM 15 C C12 00P . . . E 4 17.43 -14.699 23.211 1 45.76 ? C12 00P 380 A 1 HETATM 16 O O13 00P . . . E 4 16.457 -14.148 23.693 1 45.72 ? O13 00P 380 A 1 HETATM 17 C C14 00P . . . E 4 20.444 -14.598 21.253 1 46.36 ? C14 00P 380 A 1 HETATM 18 C C15 00P . . . E 4 20.138 -13.483 20.28 1 46.68 ? C15 00P 380 A 1 HETATM 19 C C16 00P . . . E 4 19.009 -12.764 20.413 1 46.95 ? C16 00P 380 A 1 HETATM 20 C C17 00P . . . E 4 17.994 -12.889 21.514 1 46.48 ? C17 00P 380 A 1 HETATM 21 C C18 00P . . . E 4 16.595 -12.962 20.813 1 46.83 ? C18 00P 380 A 1 HETATM 22 O O19 00P . . . E 4 16.363 -13.775 19.931 1 47.35 ? O19 00P 380 A 1 HETATM 23 C C31 00P . . . E 4 17.371 -16.934 24.395 1 45.43 ? C31 00P 380 A 1 HETATM 24 C C32 00P . . . E 4 16.902 -16.402 25.739 1 44.85 ? C32 00P 380 A 1 HETATM 25 S S33 00P . . . E 4 18.203 -17.028 26.751 1 44.54 ? S33 00P 380 A 1 HETATM 26 O O34 00P . . . E 4 17.948 -16.912 28.158 1 44.99 ? O34 00P 380 A 1 HETATM 27 O O35 00P . . . E 4 18.536 -18.371 26.22 1 45.92 ? O35 00P 380 A 1 HETATM 28 C C36 00P . . . E 4 19.706 -16.113 26.436 1 44.72 ? C36 00P 380 A 1 HETATM 29 C C37 00P . . . E 4 20.258 -15.302 27.42 1 44.56 ? C37 00P 380 A 1 HETATM 30 C C38 00P . . . E 4 21.452 -14.636 27.151 1 44.1 ? C38 00P 380 A 1 HETATM 31 C C39 00P . . . E 4 22.083 -14.781 25.919 1 44.25 ? C39 00P 380 A 1 HETATM 32 C C40 00P . . . E 4 21.535 -15.599 24.934 1 44.03 ? C40 00P 380 A 1 HETATM 33 C C41 00P . . . E 4 20.348 -16.271 25.201 1 44.34 ? C41 00P 380 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 33 #