data_1D9I
#
_model_server_result.job_id            pHtrRa9Rc79lXdrQu_lqxg 
_model_server_result.datetime_utc      '2024-12-27 00:33:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1d9i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":950}' 
#
_entry.id    1D9I 
#
_exptl.entry_id    1D9I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.7 
_cell.angle_gamma         90 
_cell.entry_id            1D9I 
_cell.length_a            71.46 
_cell.length_b            72.19 
_cell.length_c            73.12 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1D9I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 1 1_555 A SG CYS 149 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf2 A SG CYS 58 A CYS 42 1_555 A SG CYS 74 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 203 A CYS 168 1_555 A SG CYS 217 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 231 A CYS 191 1_555 A SG CYS 261 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 B C GLU 8 I GLU 362 1_555 B N TYS 9 I TYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale2 B C TYS 9 I TYS 363 1_555 B N LEU 10 I LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
metalc ? metalc1 A O LYS 204 A LYS 169 1_555 C NA NA . A NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 A O THR 207 A THR 172 1_555 C NA NA . A NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc3 A O PHE 245 A PHE 204 4_546 C NA NA . A NA 950 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc4 A O LYS 266 A LYS 224 1_555 D NA NA . A NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1D9I 
_atom_sites.fract_transf_matrix[1][1]    0.013994 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002644 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA A 1 950 950 NA NA . 
D 3 NA A 1 951 951 NA NA . 
E 4 00P A 1 380 380 00P 00P . 
F 5 HOH A 1 401 401 HOH HOH . 
F 5 HOH A 2 402 402 HOH HOH . 
F 5 HOH A 3 403 403 HOH HOH . 
F 5 HOH A 4 405 405 HOH HOH . 
F 5 HOH A 5 406 406 HOH HOH . 
F 5 HOH A 6 407 407 HOH HOH . 
F 5 HOH A 7 408 408 HOH HOH . 
F 5 HOH A 8 409 409 HOH HOH . 
F 5 HOH A 9 412 412 HOH HOH . 
F 5 HOH A 10 413 413 HOH HOH . 
F 5 HOH A 11 416 416 HOH HOH . 
F 5 HOH A 12 418 418 HOH HOH . 
F 5 HOH A 13 419 419 HOH HOH . 
F 5 HOH A 14 420 420 HOH HOH . 
F 5 HOH A 15 421 421 HOH HOH . 
F 5 HOH A 16 422 422 HOH HOH . 
F 5 HOH A 17 426 426 HOH HOH . 
F 5 HOH A 18 428 428 HOH HOH . 
F 5 HOH A 19 429 429 HOH HOH . 
F 5 HOH A 20 430 430 HOH HOH . 
F 5 HOH A 21 431 431 HOH HOH . 
F 5 HOH A 22 435 435 HOH HOH . 
F 5 HOH A 23 436 436 HOH HOH . 
F 5 HOH A 24 437 437 HOH HOH . 
F 5 HOH A 25 440 440 HOH HOH . 
F 5 HOH A 26 442 442 HOH HOH . 
F 5 HOH A 27 445 445 HOH HOH . 
F 5 HOH A 28 449 449 HOH HOH . 
F 5 HOH A 29 450 450 HOH HOH . 
F 5 HOH A 30 451 451 HOH HOH . 
F 5 HOH A 31 457 457 HOH HOH . 
F 5 HOH A 32 461 461 HOH HOH . 
F 5 HOH A 33 463 463 HOH HOH . 
F 5 HOH A 34 465 465 HOH HOH . 
F 5 HOH A 35 466 466 HOH HOH . 
F 5 HOH A 36 471 471 HOH HOH . 
F 5 HOH A 37 477 477 HOH HOH . 
F 5 HOH A 38 482 482 HOH HOH . 
F 5 HOH A 39 483 483 HOH HOH . 
F 5 HOH A 40 490 490 HOH HOH . 
F 5 HOH A 41 491 491 HOH HOH . 
F 5 HOH A 42 494 494 HOH HOH . 
F 5 HOH A 43 495 495 HOH HOH . 
F 5 HOH A 44 497 497 HOH HOH . 
F 5 HOH A 45 498 498 HOH HOH . 
F 5 HOH A 46 501 501 HOH HOH . 
F 5 HOH A 47 503 503 HOH HOH . 
F 5 HOH A 48 515 515 HOH HOH . 
F 5 HOH A 49 519 519 HOH HOH . 
F 5 HOH A 50 522 522 HOH HOH . 
F 5 HOH A 51 523 523 HOH HOH . 
F 5 HOH A 52 525 525 HOH HOH . 
F 5 HOH A 53 527 527 HOH HOH . 
F 5 HOH A 54 535 535 HOH HOH . 
F 5 HOH A 55 551 551 HOH HOH . 
F 5 HOH A 56 555 555 HOH HOH . 
F 5 HOH A 57 557 557 HOH HOH . 
F 5 HOH A 58 566 566 HOH HOH . 
F 5 HOH A 59 575 575 HOH HOH . 
F 5 HOH A 60 601 601 HOH HOH . 
F 5 HOH A 61 602 602 HOH HOH . 
F 5 HOH A 62 603 603 HOH HOH . 
F 5 HOH A 63 604 604 HOH HOH . 
F 5 HOH A 64 605 605 HOH HOH . 
F 5 HOH A 65 607 607 HOH HOH . 
F 5 HOH A 66 608 608 HOH HOH . 
F 5 HOH A 67 609 609 HOH HOH . 
F 5 HOH A 68 610 610 HOH HOH . 
F 5 HOH A 69 612 612 HOH HOH . 
F 5 HOH A 70 613 613 HOH HOH . 
F 5 HOH A 71 615 615 HOH HOH . 
F 5 HOH A 72 616 616 HOH HOH . 
F 5 HOH A 73 618 618 HOH HOH . 
F 5 HOH A 74 619 619 HOH HOH . 
F 5 HOH A 75 620 620 HOH HOH . 
F 5 HOH A 76 621 621 HOH HOH . 
F 5 HOH A 77 623 623 HOH HOH . 
F 5 HOH A 78 625 625 HOH HOH . 
F 5 HOH A 79 626 626 HOH HOH . 
F 5 HOH A 80 628 628 HOH HOH . 
F 5 HOH A 81 631 631 HOH HOH . 
F 5 HOH A 82 632 632 HOH HOH . 
F 5 HOH A 83 633 633 HOH HOH . 
F 5 HOH A 84 634 634 HOH HOH . 
F 5 HOH A 85 635 635 HOH HOH . 
F 5 HOH A 86 636 636 HOH HOH . 
F 5 HOH A 87 637 637 HOH HOH . 
F 5 HOH A 88 639 639 HOH HOH . 
F 5 HOH A 89 640 640 HOH HOH . 
F 5 HOH A 90 642 642 HOH HOH . 
F 5 HOH A 91 643 643 HOH HOH . 
F 5 HOH A 92 644 644 HOH HOH . 
F 5 HOH A 93 646 646 HOH HOH . 
F 5 HOH A 94 647 647 HOH HOH . 
G 5 HOH I 1 467 467 HOH HOH . 
G 5 HOH I 2 617 617 HOH HOH . 
G 5 HOH I 3 629 629 HOH HOH . 
G 5 HOH I 4 630 630 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               18.439 
_atom_site.Cartn_y               -16.439 
_atom_site.Cartn_z               38.817 
_atom_site.occupancy             0.61 
_atom_site.B_iso_or_equiv        28.63 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           950 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              119 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#