data_1D9R # _model_server_result.job_id KVNvyYlI4WBzUjl4jyEi9Q _model_server_result.datetime_utc '2025-02-26 22:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":21}' # _entry.id 1D9R # _exptl.entry_id 1D9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D9R _cell.length_a 22.711 _cell.length_b 67.216 _cell.length_c 72.504 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D9R _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DA 5 A DA 5 1_555 A P BRU 6 A BRU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.64 ? covale ? covale2 A O3' BRU 6 A BRU 6 1_555 A P DG 7 A DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale3 B O3' DA 5 B DA 15 1_555 B P BRU 6 B BRU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale4 B O3' BRU 6 B BRU 16 1_555 B P DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? metalc ? metalc1 C CO NCO . A NCO 21 1_555 C N2 NCO . A NCO 21 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc2 C CO NCO . A NCO 21 1_555 C N4 NCO . A NCO 21 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 C CO NCO . A NCO 21 1_555 C N5 NCO . A NCO 21 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 C CO NCO . A NCO 21 1_555 C N1 NCO . A NCO 21 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 C CO NCO . A NCO 21 1_555 C N6 NCO . A NCO 21 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc6 C CO NCO . A NCO 21 1_555 C N3 NCO . A NCO 21 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog7 A N2 DG 3 A DG 3 1_555 B N7 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog8 A N3 DG 3 A DG 3 1_555 B N6 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog9 A N6 DA 4 A DA 4 1_555 B N3 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog10 A N7 DA 4 A DA 4 1_555 B N2 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 5 A DA 5 1_555 B N3 BRU 6 B BRU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 5 A DA 5 1_555 B O4 BRU 6 B BRU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 BRU 6 A BRU 6 1_555 B N1 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 BRU 6 A BRU 6 1_555 B N6 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog15 A N2 DG 7 A DG 7 1_555 B N7 DA 4 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog16 A N3 DG 7 A DG 7 1_555 B N6 DA 4 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog17 A N6 DA 8 A DA 8 1_555 B N3 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog18 A N7 DA 8 A DA 8 1_555 B N2 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 10 A DG 10 1_555 B N4 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 149 n n CO N2 NCO sing 150 n n CO N3 NCO sing 151 n n CO N4 NCO sing 152 n n CO N5 NCO sing 153 n n CO N6 NCO sing 154 n n N1 HN11 NCO sing 155 n n N1 HN12 NCO sing 156 n n N1 HN13 NCO sing 157 n n N2 HN21 NCO sing 158 n n N2 HN22 NCO sing 159 n n N2 HN23 NCO sing 160 n n N3 HN31 NCO sing 161 n n N3 HN32 NCO sing 162 n n N3 HN33 NCO sing 163 n n N4 HN41 NCO sing 164 n n N4 HN42 NCO sing 165 n n N4 HN43 NCO sing 166 n n N5 HN51 NCO sing 167 n n N5 HN52 NCO sing 168 n n N5 HN53 NCO sing 169 n n N6 HN61 NCO sing 170 n n N6 HN62 NCO sing 171 n n N6 HN63 NCO sing 172 n n # _atom_sites.entry_id 1D9R _atom_sites.fract_transf_matrix[1][1] 0.044032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NCO A 1 21 21 NCO NCO . D 3 HOH A 1 1004 1004 HOH HOH . D 3 HOH A 2 1005 1005 HOH HOH . D 3 HOH A 3 1008 1008 HOH HOH . D 3 HOH A 4 1009 1009 HOH HOH . D 3 HOH A 5 1011 1011 HOH HOH . D 3 HOH A 6 1012 1012 HOH HOH . D 3 HOH A 7 1015 1015 HOH HOH . D 3 HOH A 8 1017 1017 HOH HOH . D 3 HOH A 9 1018 1018 HOH HOH . D 3 HOH A 10 1020 1020 HOH HOH . D 3 HOH A 11 1021 1021 HOH HOH . D 3 HOH A 12 1029 1029 HOH HOH . D 3 HOH A 13 1030 1030 HOH HOH . D 3 HOH A 14 1031 1031 HOH HOH . D 3 HOH A 15 1035 1035 HOH HOH . D 3 HOH A 16 1036 1036 HOH HOH . D 3 HOH A 17 1037 1037 HOH HOH . D 3 HOH A 18 1038 1038 HOH HOH . D 3 HOH A 19 1039 1039 HOH HOH . D 3 HOH A 20 1040 1040 HOH HOH . D 3 HOH A 21 1041 1041 HOH HOH . D 3 HOH A 22 1045 1045 HOH HOH . D 3 HOH A 23 1048 1048 HOH HOH . D 3 HOH A 24 1053 1053 HOH HOH . D 3 HOH A 25 1055 1055 HOH HOH . D 3 HOH A 26 1056 1056 HOH HOH . D 3 HOH A 27 1057 1057 HOH HOH . D 3 HOH A 28 1058 1058 HOH HOH . D 3 HOH A 29 1061 1061 HOH HOH . D 3 HOH A 30 1062 1062 HOH HOH . D 3 HOH A 31 1064 1064 HOH HOH . D 3 HOH A 32 1065 1065 HOH HOH . D 3 HOH A 33 1069 1069 HOH HOH . D 3 HOH A 34 1071 1071 HOH HOH . D 3 HOH A 35 1073 1073 HOH HOH . D 3 HOH A 36 1078 1078 HOH HOH . D 3 HOH A 37 1082 1082 HOH HOH . D 3 HOH A 38 1084 1084 HOH HOH . D 3 HOH A 39 1085 1085 HOH HOH . D 3 HOH A 40 1090 1090 HOH HOH . D 3 HOH A 41 1094 1094 HOH HOH . D 3 HOH A 42 1096 1096 HOH HOH . D 3 HOH A 43 1097 1097 HOH HOH . D 3 HOH A 44 1098 1098 HOH HOH . D 3 HOH A 45 1099 1099 HOH HOH . D 3 HOH A 46 1101 1101 HOH HOH . D 3 HOH A 47 1102 1102 HOH HOH . D 3 HOH A 48 1103 1103 HOH HOH . D 3 HOH A 49 1104 1104 HOH HOH . D 3 HOH A 50 1106 1106 HOH HOH . D 3 HOH A 51 1108 1108 HOH HOH . D 3 HOH A 52 1112 1112 HOH HOH . D 3 HOH A 53 1116 1116 HOH HOH . D 3 HOH A 54 1117 1117 HOH HOH . D 3 HOH A 55 1120 1120 HOH HOH . D 3 HOH A 56 1121 1121 HOH HOH . D 3 HOH A 57 1122 1122 HOH HOH . D 3 HOH A 58 1124 1124 HOH HOH . D 3 HOH A 59 1126 1126 HOH HOH . D 3 HOH A 60 1127 1127 HOH HOH . D 3 HOH A 61 1128 1128 HOH HOH . D 3 HOH A 62 1130 1130 HOH HOH . D 3 HOH A 63 1131 1131 HOH HOH . D 3 HOH A 64 1132 1132 HOH HOH . E 3 HOH B 1 1001 1001 HOH HOH . E 3 HOH B 2 1002 1002 HOH HOH . E 3 HOH B 3 1003 1003 HOH HOH . E 3 HOH B 4 1006 1006 HOH HOH . E 3 HOH B 5 1007 1007 HOH HOH . E 3 HOH B 6 1010 1010 HOH HOH . E 3 HOH B 7 1013 1013 HOH HOH . E 3 HOH B 8 1014 1014 HOH HOH . E 3 HOH B 9 1016 1016 HOH HOH . E 3 HOH B 10 1019 1019 HOH HOH . E 3 HOH B 11 1022 1022 HOH HOH . E 3 HOH B 12 1023 1023 HOH HOH . E 3 HOH B 13 1024 1024 HOH HOH . E 3 HOH B 14 1025 1025 HOH HOH . E 3 HOH B 15 1026 1026 HOH HOH . E 3 HOH B 16 1027 1027 HOH HOH . E 3 HOH B 17 1028 1028 HOH HOH . E 3 HOH B 18 1032 1032 HOH HOH . E 3 HOH B 19 1033 1033 HOH HOH . E 3 HOH B 20 1034 1034 HOH HOH . E 3 HOH B 21 1042 1042 HOH HOH . E 3 HOH B 22 1043 1043 HOH HOH . E 3 HOH B 23 1044 1044 HOH HOH . E 3 HOH B 24 1046 1046 HOH HOH . E 3 HOH B 25 1047 1047 HOH HOH . E 3 HOH B 26 1049 1049 HOH HOH . E 3 HOH B 27 1050 1050 HOH HOH . E 3 HOH B 28 1051 1051 HOH HOH . E 3 HOH B 29 1052 1052 HOH HOH . E 3 HOH B 30 1054 1054 HOH HOH . E 3 HOH B 31 1059 1059 HOH HOH . E 3 HOH B 32 1060 1060 HOH HOH . E 3 HOH B 33 1063 1063 HOH HOH . E 3 HOH B 34 1066 1066 HOH HOH . E 3 HOH B 35 1067 1067 HOH HOH . E 3 HOH B 36 1068 1068 HOH HOH . E 3 HOH B 37 1070 1070 HOH HOH . E 3 HOH B 38 1072 1072 HOH HOH . E 3 HOH B 39 1074 1074 HOH HOH . E 3 HOH B 40 1075 1075 HOH HOH . E 3 HOH B 41 1076 1076 HOH HOH . E 3 HOH B 42 1077 1077 HOH HOH . E 3 HOH B 43 1079 1079 HOH HOH . E 3 HOH B 44 1080 1080 HOH HOH . E 3 HOH B 45 1081 1081 HOH HOH . E 3 HOH B 46 1083 1083 HOH HOH . E 3 HOH B 47 1086 1086 HOH HOH . E 3 HOH B 48 1087 1087 HOH HOH . E 3 HOH B 49 1088 1088 HOH HOH . E 3 HOH B 50 1089 1089 HOH HOH . E 3 HOH B 51 1091 1091 HOH HOH . E 3 HOH B 52 1092 1092 HOH HOH . E 3 HOH B 53 1093 1093 HOH HOH . E 3 HOH B 54 1095 1095 HOH HOH . E 3 HOH B 55 1100 1100 HOH HOH . E 3 HOH B 56 1105 1105 HOH HOH . E 3 HOH B 57 1107 1107 HOH HOH . E 3 HOH B 58 1109 1109 HOH HOH . E 3 HOH B 59 1110 1110 HOH HOH . E 3 HOH B 60 1111 1111 HOH HOH . E 3 HOH B 61 1113 1113 HOH HOH . E 3 HOH B 62 1114 1114 HOH HOH . E 3 HOH B 63 1115 1115 HOH HOH . E 3 HOH B 64 1118 1118 HOH HOH . E 3 HOH B 65 1119 1119 HOH HOH . E 3 HOH B 66 1123 1123 HOH HOH . E 3 HOH B 67 1125 1125 HOH HOH . E 3 HOH B 68 1129 1129 HOH HOH . E 3 HOH B 69 1133 1133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . C 2 0 14.493 18.126 0.5 23.83 ? CO NCO 21 A 1 HETATM 2 N N1 NCO . . . C 2 -1.086 13.068 17.198 0.5 34.37 ? N1 NCO 21 A 1 HETATM 3 N N2 NCO . . . C 2 -1.277 14.416 19.654 0.5 25.23 ? N2 NCO 21 A 1 HETATM 4 N N3 NCO . . . C 2 -1.117 15.904 17.227 0.5 26.77 ? N3 NCO 21 A 1 HETATM 5 N N4 NCO . . . C 2 1.088 13.068 19.054 0.5 34.37 ? N4 NCO 21 A 1 HETATM 6 N N5 NCO . . . C 2 1.279 14.416 16.598 0.5 25.23 ? N5 NCO 21 A 1 HETATM 7 N N6 NCO . . . C 2 1.119 15.904 19.025 0.5 26.77 ? N6 NCO 21 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 479 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #