data_1D9U # _model_server_result.job_id E3olyQfu6U7Xk78EtGwdOQ _model_server_result.datetime_utc '2025-03-06 09:05:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1d9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 1D9U # _exptl.entry_id 1D9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1D9U _cell.length_a 57.2 _cell.length_b 61.081 _cell.length_c 122.447 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,I 1 1 B,C,D,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NDG NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NAG NDG C1 O1 . O4 HO4 . sing 4 ? 2 5 4 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 2 6 5 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 3 3 2 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 3 4 3 NDG NAG C1 O1 . O4 HO4 . sing 9 ? 3 5 4 NDG NDG C1 O1 . O4 HO4 . sing 10 ? 3 6 5 NAG NDG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG ? 406 NAG 2 n C NAG 2 C 2 NAG ? 405 NAG 2 n C NDG 3 C 3 NDG ? 404 NAG 2 n C NAG 4 C 4 NAG ? 403 NAG 2 n C NAG 5 C 5 NAG ? 402 NAG 2 n C NAG 6 C 6 NAG ? 401 NAG 3 n D NAG 1 D 1 NAG ? 406 NAG 3 n D NAG 2 D 2 NAG ? 405 NAG 3 n D NAG 3 D 3 NAG ? 404 NAG 3 n D NDG 4 D 4 NDG ? 403 NAG 3 n D NDG 5 D 5 NDG ? 402 NAG 3 n D NAG 6 D 6 NAG ? 401 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale2 C O4 NAG . C NAG 2 1_555 C C1 NDG . C NDG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale3 C O4 NDG . C NDG 3 1_555 C C1 NAG . C NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale4 C O4 NAG . C NAG 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale5 C O4 NAG . C NAG 5 1_555 C C1 NAG . C NAG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 NAG . D NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale8 D O4 NAG . D NAG 3 1_555 D C1 NDG . D NDG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale9 D O4 NDG . D NDG 4 1_555 D C1 NDG . D NDG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale10 D O4 NDG . D NDG 5 1_555 D C1 NAG . D NAG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 350 n n S O2 SO4 doub 351 n n S O3 SO4 sing 352 n n S O4 SO4 sing 353 n n # _atom_sites.entry_id 1D9U _atom_sites.fract_transf_matrix[1][1] 0.017483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 A 1 200 200 SO4 SO4 . F 4 SO4 A 1 201 201 SO4 SO4 . G 4 SO4 A 1 203 203 SO4 SO4 . H 4 SO4 B 1 202 202 SO4 SO4 . I 5 HOH A 1 300 300 HOH TIP . I 5 HOH A 2 302 302 HOH TIP . I 5 HOH A 3 303 303 HOH TIP . I 5 HOH A 4 304 304 HOH TIP . I 5 HOH A 5 306 306 HOH TIP . I 5 HOH A 6 312 312 HOH TIP . I 5 HOH A 7 313 313 HOH TIP . I 5 HOH A 8 325 325 HOH TIP . I 5 HOH A 9 326 326 HOH TIP . I 5 HOH A 10 327 327 HOH TIP . I 5 HOH A 11 330 330 HOH TIP . J 5 HOH B 1 301 301 HOH TIP . J 5 HOH B 2 305 305 HOH TIP . J 5 HOH B 3 307 307 HOH TIP . J 5 HOH B 4 308 308 HOH TIP . J 5 HOH B 5 309 309 HOH TIP . J 5 HOH B 6 310 310 HOH TIP . J 5 HOH B 7 311 311 HOH TIP . J 5 HOH B 8 314 314 HOH TIP . J 5 HOH B 9 315 315 HOH TIP . J 5 HOH B 10 316 316 HOH TIP . J 5 HOH B 11 317 317 HOH TIP . J 5 HOH B 12 318 318 HOH TIP . J 5 HOH B 13 319 319 HOH TIP . J 5 HOH B 14 320 320 HOH TIP . J 5 HOH B 15 321 321 HOH TIP . J 5 HOH B 16 322 322 HOH TIP . J 5 HOH B 17 323 323 HOH TIP . J 5 HOH B 18 324 324 HOH TIP . J 5 HOH B 19 328 328 HOH TIP . J 5 HOH B 20 329 329 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 4 108.268 92.651 149.57 1 27.86 ? S SO4 201 A 1 HETATM 2 O O1 SO4 . . . F 4 107.405 93.778 149.25 1 38.21 ? O1 SO4 201 A 1 HETATM 3 O O2 SO4 . . . F 4 107.917 92.119 150.932 1 42.08 ? O2 SO4 201 A 1 HETATM 4 O O3 SO4 . . . F 4 108.165 91.499 148.543 1 40.16 ? O3 SO4 201 A 1 HETATM 5 O O4 SO4 . . . F 4 109.732 93.101 149.49 1 34.55 ? O4 SO4 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #