data_1DA3 # _model_server_result.job_id T-q2MVu1eDGPiz0dmtPN0Q _model_server_result.datetime_utc '2025-09-05 02:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1da3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":23}' # _entry.id 1DA3 # _exptl.entry_id 1DA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DA3 _cell.length_a 33.378 _cell.length_b 33.378 _cell.length_c 98.302 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 6 A DG 6 1_555 A P 6MA 7 A 6MA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale2 A O3' 6MA 7 A 6MA 7 1_555 A P DT 8 A DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? covale ? covale3 B O3' DG 6 B DG 16 1_555 B P 6MA 7 B 6MA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.57 ? covale ? covale4 B O3' 6MA 7 B 6MA 17 1_555 B P DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? metalc ? metalc1 B OP1 DG 6 B DG 16 1_555 E MG MG . B MG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 D MG MG . B MG 22 4_555 G O HOH . B HOH 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 D MG MG . B MG 22 1_555 G O HOH . B HOH 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 D MG MG . B MG 22 4_555 G O HOH . B HOH 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 D MG MG . B MG 22 1_555 G O HOH . B HOH 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc6 D MG MG . B MG 22 1_555 G O HOH . B HOH 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 E MG MG . B MG 23 1_555 G O HOH . B HOH 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc8 E MG MG . B MG 23 1_555 G O HOH . B HOH 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc9 E MG MG . B MG 23 1_555 G O HOH . B HOH 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc10 E MG MG . B MG 23 1_555 G O HOH . B HOH 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc11 E MG MG . B MG 23 1_555 G O HOH . B HOH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 9 B DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 9 B DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 9 B DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 3 A DA 3 1_555 B N3 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 3 A DA 3 1_555 B O4 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 6MA 7 B 6MA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 6MA 7 B 6MA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 6MA 7 A 6MA 7 1_555 B N3 DT 4 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 6MA 7 A 6MA 7 1_555 B O4 DT 4 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 2 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 2 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 2 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DA3 _atom_sites.fract_transf_matrix[1][1] 0.02996 _atom_sites.fract_transf_matrix[1][2] 0.017297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL B 1 21 21 CL CL . D 3 MG B 1 22 22 MG MG . E 3 MG B 1 23 23 MG MG . F 4 HOH A 1 24 24 HOH HOH . F 4 HOH A 2 25 25 HOH HOH . F 4 HOH A 3 26 26 HOH HOH . F 4 HOH A 4 29 29 HOH HOH . F 4 HOH A 5 31 31 HOH HOH . F 4 HOH A 6 34 34 HOH HOH . F 4 HOH A 7 39 39 HOH HOH . F 4 HOH A 8 47 47 HOH HOH . F 4 HOH A 9 50 50 HOH HOH . F 4 HOH A 10 52 52 HOH HOH . F 4 HOH A 11 53 53 HOH HOH . F 4 HOH A 12 56 56 HOH HOH . F 4 HOH A 13 57 57 HOH HOH . F 4 HOH A 14 58 58 HOH HOH . F 4 HOH A 15 62 62 HOH HOH . F 4 HOH A 16 64 64 HOH HOH . F 4 HOH A 17 66 66 HOH HOH . F 4 HOH A 18 67 67 HOH HOH . F 4 HOH A 19 68 68 HOH HOH . G 4 HOH B 1 27 27 HOH HOH . G 4 HOH B 2 28 28 HOH HOH . G 4 HOH B 3 30 30 HOH HOH . G 4 HOH B 4 32 32 HOH HOH . G 4 HOH B 5 33 33 HOH HOH . G 4 HOH B 6 35 35 HOH HOH . G 4 HOH B 7 36 36 HOH HOH . G 4 HOH B 8 37 37 HOH HOH . G 4 HOH B 9 38 38 HOH HOH . G 4 HOH B 10 40 40 HOH HOH . G 4 HOH B 11 41 41 HOH HOH . G 4 HOH B 12 42 42 HOH HOH . G 4 HOH B 13 43 43 HOH HOH . G 4 HOH B 14 44 44 HOH HOH . G 4 HOH B 15 45 45 HOH HOH . G 4 HOH B 16 46 46 HOH HOH . G 4 HOH B 17 48 48 HOH HOH . G 4 HOH B 18 49 49 HOH HOH . G 4 HOH B 19 51 51 HOH HOH . G 4 HOH B 20 54 54 HOH HOH . G 4 HOH B 21 55 55 HOH HOH . G 4 HOH B 22 59 59 HOH HOH . G 4 HOH B 23 60 60 HOH HOH . G 4 HOH B 24 61 61 HOH HOH . G 4 HOH B 25 63 63 HOH HOH . G 4 HOH B 26 65 65 HOH HOH . G 4 HOH B 27 69 69 HOH HOH . G 4 HOH B 28 70 70 HOH HOH . G 4 HOH B 29 71 71 HOH HOH . G 4 HOH B 30 72 72 HOH HOH . G 4 HOH B 31 73 73 HOH HOH . G 4 HOH B 32 74 74 HOH HOH . G 4 HOH B 33 75 75 HOH HOH . G 4 HOH B 34 76 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.789 _atom_site.Cartn_y 19.887 _atom_site.Cartn_z -4.817 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 23 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #