data_1DAA
#
_model_server_result.job_id            E7QyaAyMps0KHZo1LJBePA 
_model_server_result.datetime_utc      '2024-12-12 06:35:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1daa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":285}' 
#
_entry.id    1DAA 
#
_exptl.entry_id    1DAA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.9 
_cell.angle_gamma         90 
_cell.entry_id            1DAA 
_cell.length_a            58.5 
_cell.length_b            76.2 
_cell.length_c            73.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DAA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     1DAA 
_atom_sites.fract_transf_matrix[1][1]    0.017094 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00423 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 285 285 PLP PLP . 
D 2 PLP B 1 285 285 PLP PLP . 
E 3 HOH A 1 602 602 HOH HOH . 
E 3 HOH A 2 603 603 HOH HOH . 
E 3 HOH A 3 605 605 HOH HOH . 
E 3 HOH A 4 606 606 HOH HOH . 
E 3 HOH A 5 609 609 HOH HOH . 
E 3 HOH A 6 611 611 HOH HOH . 
E 3 HOH A 7 613 613 HOH HOH . 
E 3 HOH A 8 615 615 HOH HOH . 
E 3 HOH A 9 616 616 HOH HOH . 
E 3 HOH A 10 617 617 HOH HOH . 
E 3 HOH A 11 623 623 HOH HOH . 
E 3 HOH A 12 624 624 HOH HOH . 
E 3 HOH A 13 626 626 HOH HOH . 
E 3 HOH A 14 627 627 HOH HOH . 
E 3 HOH A 15 629 629 HOH HOH . 
E 3 HOH A 16 632 632 HOH HOH . 
E 3 HOH A 17 633 633 HOH HOH . 
E 3 HOH A 18 634 634 HOH HOH . 
E 3 HOH A 19 635 635 HOH HOH . 
E 3 HOH A 20 637 637 HOH HOH . 
E 3 HOH A 21 640 640 HOH HOH . 
E 3 HOH A 22 641 641 HOH HOH . 
E 3 HOH A 23 642 642 HOH HOH . 
E 3 HOH A 24 643 643 HOH HOH . 
E 3 HOH A 25 645 645 HOH HOH . 
E 3 HOH A 26 646 646 HOH HOH . 
E 3 HOH A 27 647 647 HOH HOH . 
E 3 HOH A 28 648 648 HOH HOH . 
E 3 HOH A 29 649 649 HOH HOH . 
E 3 HOH A 30 652 652 HOH HOH . 
E 3 HOH A 31 654 654 HOH HOH . 
E 3 HOH A 32 655 655 HOH HOH . 
E 3 HOH A 33 657 657 HOH HOH . 
E 3 HOH A 34 658 658 HOH HOH . 
E 3 HOH A 35 659 659 HOH HOH . 
E 3 HOH A 36 661 661 HOH HOH . 
E 3 HOH A 37 662 662 HOH HOH . 
E 3 HOH A 38 663 663 HOH HOH . 
E 3 HOH A 39 664 664 HOH HOH . 
E 3 HOH A 40 665 665 HOH HOH . 
E 3 HOH A 41 666 666 HOH HOH . 
E 3 HOH A 42 668 668 HOH HOH . 
E 3 HOH A 43 669 669 HOH HOH . 
E 3 HOH A 44 670 670 HOH HOH . 
E 3 HOH A 45 671 671 HOH HOH . 
E 3 HOH A 46 672 672 HOH HOH . 
E 3 HOH A 47 673 673 HOH HOH . 
E 3 HOH A 48 674 674 HOH HOH . 
E 3 HOH A 49 675 675 HOH HOH . 
E 3 HOH A 50 676 676 HOH HOH . 
E 3 HOH A 51 677 677 HOH HOH . 
E 3 HOH A 52 678 678 HOH HOH . 
E 3 HOH A 53 680 680 HOH HOH . 
E 3 HOH A 54 681 681 HOH HOH . 
E 3 HOH A 55 683 683 HOH HOH . 
E 3 HOH A 56 685 685 HOH HOH . 
E 3 HOH A 57 686 686 HOH HOH . 
E 3 HOH A 58 687 687 HOH HOH . 
E 3 HOH A 59 691 691 HOH HOH . 
E 3 HOH A 60 693 693 HOH HOH . 
E 3 HOH A 61 713 713 HOH HOH . 
E 3 HOH A 62 714 714 HOH HOH . 
E 3 HOH A 63 717 717 HOH HOH . 
E 3 HOH A 64 718 718 HOH HOH . 
E 3 HOH A 65 721 721 HOH HOH . 
E 3 HOH A 66 722 722 HOH HOH . 
E 3 HOH A 67 725 725 HOH HOH . 
E 3 HOH A 68 727 727 HOH HOH . 
E 3 HOH A 69 728 728 HOH HOH . 
E 3 HOH A 70 729 729 HOH HOH . 
E 3 HOH A 71 730 730 HOH HOH . 
E 3 HOH A 72 731 731 HOH HOH . 
E 3 HOH A 73 732 732 HOH HOH . 
E 3 HOH A 74 739 739 HOH HOH . 
E 3 HOH A 75 742 742 HOH HOH . 
E 3 HOH A 76 743 743 HOH HOH . 
E 3 HOH A 77 744 744 HOH HOH . 
E 3 HOH A 78 746 746 HOH HOH . 
E 3 HOH A 79 750 750 HOH HOH . 
E 3 HOH A 80 751 751 HOH HOH . 
E 3 HOH A 81 752 752 HOH HOH . 
E 3 HOH A 82 754 754 HOH HOH . 
E 3 HOH A 83 756 756 HOH HOH . 
E 3 HOH A 84 761 761 HOH HOH . 
E 3 HOH A 85 771 771 HOH HOH . 
E 3 HOH A 86 773 773 HOH HOH . 
E 3 HOH A 87 774 774 HOH HOH . 
E 3 HOH A 88 778 778 HOH HOH . 
E 3 HOH A 89 779 779 HOH HOH . 
E 3 HOH A 90 780 780 HOH HOH . 
E 3 HOH A 91 781 781 HOH HOH . 
E 3 HOH A 92 782 782 HOH HOH . 
E 3 HOH A 93 783 783 HOH HOH . 
E 3 HOH A 94 786 786 HOH HOH . 
E 3 HOH A 95 787 787 HOH HOH . 
E 3 HOH A 96 788 788 HOH HOH . 
E 3 HOH A 97 789 789 HOH HOH . 
E 3 HOH A 98 790 790 HOH HOH . 
E 3 HOH A 99 792 792 HOH HOH . 
E 3 HOH A 100 795 795 HOH HOH . 
E 3 HOH A 101 796 796 HOH HOH . 
E 3 HOH A 102 797 797 HOH HOH . 
E 3 HOH A 103 798 798 HOH HOH . 
E 3 HOH A 104 799 799 HOH HOH . 
E 3 HOH A 105 801 801 HOH HOH . 
E 3 HOH A 106 804 804 HOH HOH . 
E 3 HOH A 107 806 806 HOH HOH . 
E 3 HOH A 108 808 808 HOH HOH . 
E 3 HOH A 109 809 809 HOH HOH . 
E 3 HOH A 110 814 814 HOH HOH . 
E 3 HOH A 111 816 816 HOH HOH . 
E 3 HOH A 112 817 817 HOH HOH . 
E 3 HOH A 113 819 819 HOH HOH . 
E 3 HOH A 114 821 821 HOH HOH . 
E 3 HOH A 115 822 822 HOH HOH . 
E 3 HOH A 116 826 826 HOH HOH . 
E 3 HOH A 117 827 827 HOH HOH . 
E 3 HOH A 118 828 828 HOH HOH . 
E 3 HOH A 119 829 829 HOH HOH . 
F 3 HOH B 1 601 601 HOH HOH . 
F 3 HOH B 2 604 604 HOH HOH . 
F 3 HOH B 3 607 607 HOH HOH . 
F 3 HOH B 4 608 608 HOH HOH . 
F 3 HOH B 5 610 610 HOH HOH . 
F 3 HOH B 6 612 612 HOH HOH . 
F 3 HOH B 7 614 614 HOH HOH . 
F 3 HOH B 8 618 618 HOH HOH . 
F 3 HOH B 9 619 619 HOH HOH . 
F 3 HOH B 10 620 620 HOH HOH . 
F 3 HOH B 11 621 621 HOH HOH . 
F 3 HOH B 12 622 622 HOH HOH . 
F 3 HOH B 13 625 625 HOH HOH . 
F 3 HOH B 14 628 628 HOH HOH . 
F 3 HOH B 15 630 630 HOH HOH . 
F 3 HOH B 16 631 631 HOH HOH . 
F 3 HOH B 17 636 636 HOH HOH . 
F 3 HOH B 18 638 638 HOH HOH . 
F 3 HOH B 19 639 639 HOH HOH . 
F 3 HOH B 20 644 644 HOH HOH . 
F 3 HOH B 21 650 650 HOH HOH . 
F 3 HOH B 22 651 651 HOH HOH . 
F 3 HOH B 23 653 653 HOH HOH . 
F 3 HOH B 24 656 656 HOH HOH . 
F 3 HOH B 25 660 660 HOH HOH . 
F 3 HOH B 26 667 667 HOH HOH . 
F 3 HOH B 27 679 679 HOH HOH . 
F 3 HOH B 28 682 682 HOH HOH . 
F 3 HOH B 29 684 684 HOH HOH . 
F 3 HOH B 30 688 688 HOH HOH . 
F 3 HOH B 31 689 689 HOH HOH . 
F 3 HOH B 32 690 690 HOH HOH . 
F 3 HOH B 33 692 692 HOH HOH . 
F 3 HOH B 34 694 694 HOH HOH . 
F 3 HOH B 35 695 695 HOH HOH . 
F 3 HOH B 36 696 696 HOH HOH . 
F 3 HOH B 37 697 697 HOH HOH . 
F 3 HOH B 38 698 698 HOH HOH . 
F 3 HOH B 39 699 699 HOH HOH . 
F 3 HOH B 40 700 700 HOH HOH . 
F 3 HOH B 41 701 701 HOH HOH . 
F 3 HOH B 42 702 702 HOH HOH . 
F 3 HOH B 43 703 703 HOH HOH . 
F 3 HOH B 44 704 704 HOH HOH . 
F 3 HOH B 45 705 705 HOH HOH . 
F 3 HOH B 46 706 706 HOH HOH . 
F 3 HOH B 47 707 707 HOH HOH . 
F 3 HOH B 48 708 708 HOH HOH . 
F 3 HOH B 49 709 709 HOH HOH . 
F 3 HOH B 50 710 710 HOH HOH . 
F 3 HOH B 51 711 711 HOH HOH . 
F 3 HOH B 52 712 712 HOH HOH . 
F 3 HOH B 53 715 715 HOH HOH . 
F 3 HOH B 54 716 716 HOH HOH . 
F 3 HOH B 55 719 719 HOH HOH . 
F 3 HOH B 56 720 720 HOH HOH . 
F 3 HOH B 57 723 723 HOH HOH . 
F 3 HOH B 58 724 724 HOH HOH . 
F 3 HOH B 59 726 726 HOH HOH . 
F 3 HOH B 60 733 733 HOH HOH . 
F 3 HOH B 61 734 734 HOH HOH . 
F 3 HOH B 62 735 735 HOH HOH . 
F 3 HOH B 63 736 736 HOH HOH . 
F 3 HOH B 64 737 737 HOH HOH . 
F 3 HOH B 65 738 738 HOH HOH . 
F 3 HOH B 66 740 740 HOH HOH . 
F 3 HOH B 67 741 741 HOH HOH . 
F 3 HOH B 68 745 745 HOH HOH . 
F 3 HOH B 69 747 747 HOH HOH . 
F 3 HOH B 70 748 748 HOH HOH . 
F 3 HOH B 71 749 749 HOH HOH . 
F 3 HOH B 72 753 753 HOH HOH . 
F 3 HOH B 73 755 755 HOH HOH . 
F 3 HOH B 74 757 757 HOH HOH . 
F 3 HOH B 75 758 758 HOH HOH . 
F 3 HOH B 76 759 759 HOH HOH . 
F 3 HOH B 77 760 760 HOH HOH . 
F 3 HOH B 78 762 762 HOH HOH . 
F 3 HOH B 79 763 763 HOH HOH . 
F 3 HOH B 80 764 764 HOH HOH . 
F 3 HOH B 81 765 765 HOH HOH . 
F 3 HOH B 82 766 766 HOH HOH . 
F 3 HOH B 83 767 767 HOH HOH . 
F 3 HOH B 84 768 768 HOH HOH . 
F 3 HOH B 85 769 769 HOH HOH . 
F 3 HOH B 86 770 770 HOH HOH . 
F 3 HOH B 87 772 772 HOH HOH . 
F 3 HOH B 88 775 775 HOH HOH . 
F 3 HOH B 89 776 776 HOH HOH . 
F 3 HOH B 90 777 777 HOH HOH . 
F 3 HOH B 91 784 784 HOH HOH . 
F 3 HOH B 92 785 785 HOH HOH . 
F 3 HOH B 93 791 791 HOH HOH . 
F 3 HOH B 94 793 793 HOH HOH . 
F 3 HOH B 95 794 794 HOH HOH . 
F 3 HOH B 96 800 800 HOH HOH . 
F 3 HOH B 97 802 802 HOH HOH . 
F 3 HOH B 98 803 803 HOH HOH . 
F 3 HOH B 99 805 805 HOH HOH . 
F 3 HOH B 100 807 807 HOH HOH . 
F 3 HOH B 101 810 810 HOH HOH . 
F 3 HOH B 102 811 811 HOH HOH . 
F 3 HOH B 103 812 812 HOH HOH . 
F 3 HOH B 104 813 813 HOH HOH . 
F 3 HOH B 105 815 815 HOH HOH . 
F 3 HOH B 106 818 818 HOH HOH . 
F 3 HOH B 107 820 820 HOH HOH . 
F 3 HOH B 108 823 823 HOH HOH . 
F 3 HOH B 109 824 824 HOH HOH . 
F 3 HOH B 110 825 825 HOH HOH . 
F 3 HOH B 111 830 830 HOH HOH . 
F 3 HOH B 112 831 831 HOH HOH . 
F 3 HOH B 113 832 832 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 2 24.416 3.255 52.641 1 18.06 ? N1 PLP 285 B 1 
HETATM 2 C C2 PLP . . . D 2 25.16 2.227 53.173 1 19.67 ? C2 PLP 285 B 1 
HETATM 3 C C2A PLP . . . D 2 26.655 2.108 52.82 1 20.2 ? C2A PLP 285 B 1 
HETATM 4 C C3 PLP . . . D 2 24.564 1.347 54.079 1 19.89 ? C3 PLP 285 B 1 
HETATM 5 O O3 PLP . . . D 2 25.273 0.299 54.631 1 20.58 ? O3 PLP 285 B 1 
HETATM 6 C C4 PLP . . . D 2 23.245 1.523 54.446 1 19.63 ? C4 PLP 285 B 1 
HETATM 7 C C4A PLP . . . D 2 22.582 0.496 55.347 1 20.79 ? C4A PLP 285 B 1 
HETATM 8 O O4A PLP . . . D 2 22.855 0.668 56.531 1 24.12 ? O4A PLP 285 B 1 
HETATM 9 C C5 PLP . . . D 2 22.507 2.564 53.917 1 17.62 ? C5 PLP 285 B 1 
HETATM 10 C C6 PLP . . . D 2 23.093 3.421 53.016 1 17.84 ? C6 PLP 285 B 1 
HETATM 11 C C5A PLP . . . D 2 21.019 2.732 54.286 1 15.38 ? C5A PLP 285 B 1 
HETATM 12 O O4P PLP . . . D 2 20.219 1.595 53.859 1 12.9 ? O4P PLP 285 B 1 
HETATM 13 P P PLP . . . D 2 18.856 1.16 54.572 1 8.74 ? P PLP 285 B 1 
HETATM 14 O O1P PLP . . . D 2 19.132 0.4 55.806 1 8.73 ? O1P PLP 285 B 1 
HETATM 15 O O2P PLP . . . D 2 18.298 0.185 53.46 1 9.88 ? O2P PLP 285 B 1 
HETATM 16 O O3P PLP . . . D 2 18.031 2.384 54.626 1 10.17 ? O3P PLP 285 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#