data_1DAD # _model_server_result.job_id D0r4UZTEDkQusGAI5WJNQQ _model_server_result.datetime_utc '2024-12-04 15:07:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":225}' # _entry.id 1DAD # _exptl.entry_id 1DAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.1 _cell.angle_gamma 90 _cell.entry_id 1DAD _cell.length_a 73.2 _cell.length_b 49.2 _cell.length_c 61.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1DAD _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 225 225 ADP ADP . C 3 HOH A 1 226 226 HOH HOH . C 3 HOH A 2 227 227 HOH HOH . C 3 HOH A 3 228 228 HOH HOH . C 3 HOH A 4 229 229 HOH HOH . C 3 HOH A 5 230 230 HOH HOH . C 3 HOH A 6 231 231 HOH HOH . C 3 HOH A 7 232 232 HOH HOH . C 3 HOH A 8 233 233 HOH HOH . C 3 HOH A 9 234 234 HOH HOH . C 3 HOH A 10 235 235 HOH HOH . C 3 HOH A 11 236 236 HOH HOH . C 3 HOH A 12 237 237 HOH HOH . C 3 HOH A 13 238 238 HOH HOH . C 3 HOH A 14 239 239 HOH HOH . C 3 HOH A 15 240 240 HOH HOH . C 3 HOH A 16 241 241 HOH HOH . C 3 HOH A 17 242 242 HOH HOH . C 3 HOH A 18 243 243 HOH HOH . C 3 HOH A 19 244 244 HOH HOH . C 3 HOH A 20 245 245 HOH HOH . C 3 HOH A 21 246 246 HOH HOH . C 3 HOH A 22 247 247 HOH HOH . C 3 HOH A 23 248 248 HOH HOH . C 3 HOH A 24 249 249 HOH HOH . C 3 HOH A 25 250 250 HOH HOH . C 3 HOH A 26 251 251 HOH HOH . C 3 HOH A 27 252 252 HOH HOH . C 3 HOH A 28 253 253 HOH HOH . C 3 HOH A 29 254 254 HOH HOH . C 3 HOH A 30 255 255 HOH HOH . C 3 HOH A 31 256 256 HOH HOH . C 3 HOH A 32 257 257 HOH HOH . C 3 HOH A 33 258 258 HOH HOH . C 3 HOH A 34 259 259 HOH HOH . C 3 HOH A 35 260 260 HOH HOH . C 3 HOH A 36 261 261 HOH HOH . C 3 HOH A 37 262 262 HOH HOH . C 3 HOH A 38 263 263 HOH HOH . C 3 HOH A 39 264 264 HOH HOH . C 3 HOH A 40 265 265 HOH HOH . C 3 HOH A 41 266 266 HOH HOH . C 3 HOH A 42 267 267 HOH HOH . C 3 HOH A 43 268 268 HOH HOH . C 3 HOH A 44 269 269 HOH HOH . C 3 HOH A 45 270 270 HOH HOH . C 3 HOH A 46 271 271 HOH HOH . C 3 HOH A 47 272 272 HOH HOH . C 3 HOH A 48 273 273 HOH HOH . C 3 HOH A 49 274 274 HOH HOH . C 3 HOH A 50 275 275 HOH HOH . C 3 HOH A 51 276 276 HOH HOH . C 3 HOH A 52 277 277 HOH HOH . C 3 HOH A 53 278 278 HOH HOH . C 3 HOH A 54 279 279 HOH HOH . C 3 HOH A 55 280 280 HOH HOH . C 3 HOH A 56 281 281 HOH HOH . C 3 HOH A 57 282 282 HOH HOH . C 3 HOH A 58 283 283 HOH HOH . C 3 HOH A 59 284 284 HOH HOH . C 3 HOH A 60 285 285 HOH HOH . C 3 HOH A 61 286 286 HOH HOH . C 3 HOH A 62 287 287 HOH HOH . C 3 HOH A 63 288 288 HOH HOH . C 3 HOH A 64 289 289 HOH HOH . C 3 HOH A 65 290 290 HOH HOH . C 3 HOH A 66 291 291 HOH HOH . C 3 HOH A 67 292 292 HOH HOH . C 3 HOH A 68 293 293 HOH HOH . C 3 HOH A 69 294 294 HOH HOH . C 3 HOH A 70 295 295 HOH HOH . C 3 HOH A 71 296 296 HOH HOH . C 3 HOH A 72 297 297 HOH HOH . C 3 HOH A 73 298 298 HOH HOH . C 3 HOH A 74 299 299 HOH HOH . C 3 HOH A 75 300 300 HOH HOH . C 3 HOH A 76 301 301 HOH HOH . C 3 HOH A 77 302 302 HOH HOH . C 3 HOH A 78 303 303 HOH HOH . C 3 HOH A 79 304 304 HOH HOH . C 3 HOH A 80 305 305 HOH HOH . C 3 HOH A 81 306 306 HOH HOH . C 3 HOH A 82 307 307 HOH HOH . C 3 HOH A 83 308 308 HOH HOH . C 3 HOH A 84 309 309 HOH HOH . C 3 HOH A 85 310 310 HOH HOH . C 3 HOH A 86 311 311 HOH HOH . C 3 HOH A 87 312 312 HOH HOH . C 3 HOH A 88 313 313 HOH HOH . C 3 HOH A 89 314 314 HOH HOH . C 3 HOH A 90 315 315 HOH HOH . C 3 HOH A 91 316 316 HOH HOH . C 3 HOH A 92 317 317 HOH HOH . C 3 HOH A 93 318 318 HOH HOH . C 3 HOH A 94 319 319 HOH HOH . C 3 HOH A 95 320 320 HOH HOH . C 3 HOH A 96 321 321 HOH HOH . C 3 HOH A 97 322 322 HOH HOH . C 3 HOH A 98 323 323 HOH HOH . C 3 HOH A 99 324 324 HOH HOH . C 3 HOH A 100 325 325 HOH HOH . C 3 HOH A 101 326 326 HOH HOH . C 3 HOH A 102 327 327 HOH HOH . C 3 HOH A 103 328 328 HOH HOH . C 3 HOH A 104 329 329 HOH HOH . C 3 HOH A 105 330 330 HOH HOH . C 3 HOH A 106 331 331 HOH HOH . C 3 HOH A 107 332 332 HOH HOH . C 3 HOH A 108 333 333 HOH HOH . C 3 HOH A 109 334 334 HOH HOH . C 3 HOH A 110 335 335 HOH HOH . C 3 HOH A 111 336 336 HOH HOH . C 3 HOH A 112 337 337 HOH HOH . C 3 HOH A 113 338 338 HOH HOH . C 3 HOH A 114 339 339 HOH HOH . C 3 HOH A 115 340 340 HOH HOH . C 3 HOH A 116 341 341 HOH HOH . C 3 HOH A 117 342 342 HOH HOH . C 3 HOH A 118 343 343 HOH HOH . C 3 HOH A 119 344 344 HOH HOH . C 3 HOH A 120 345 345 HOH HOH . C 3 HOH A 121 346 346 HOH HOH . C 3 HOH A 122 347 347 HOH HOH . C 3 HOH A 123 348 348 HOH HOH . C 3 HOH A 124 349 349 HOH HOH . C 3 HOH A 125 350 350 HOH HOH . C 3 HOH A 126 351 351 HOH HOH . C 3 HOH A 127 352 352 HOH HOH . C 3 HOH A 128 353 353 HOH HOH . C 3 HOH A 129 354 354 HOH HOH . C 3 HOH A 130 355 355 HOH HOH . C 3 HOH A 131 356 356 HOH HOH . C 3 HOH A 132 357 357 HOH HOH . C 3 HOH A 133 358 358 HOH HOH . C 3 HOH A 134 359 359 HOH HOH . C 3 HOH A 135 360 360 HOH HOH . C 3 HOH A 136 361 361 HOH HOH . C 3 HOH A 137 362 362 HOH HOH . C 3 HOH A 138 363 363 HOH HOH . C 3 HOH A 139 364 364 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 3.953 22.856 11.342 1 43.2 ? PB ADP 225 A 1 HETATM 2 O O1B ADP . . . B 2 4.014 23.829 10.211 1 45.08 ? O1B ADP 225 A 1 HETATM 3 O O2B ADP . . . B 2 4.292 23.519 12.791 1 44.26 ? O2B ADP 225 A 1 HETATM 4 O O3B ADP . . . B 2 2.62 22.191 11.406 1 45.71 ? O3B ADP 225 A 1 HETATM 5 P PA ADP . . . B 2 5.731 20.727 12.047 1 37.75 ? PA ADP 225 A 1 HETATM 6 O O1A ADP . . . B 2 4.765 20.393 13.108 1 38.75 ? O1A ADP 225 A 1 HETATM 7 O O2A ADP . . . B 2 7.007 21.196 12.614 1 35.92 ? O2A ADP 225 A 1 HETATM 8 O O3A ADP . . . B 2 5.096 21.833 11.136 1 42.01 ? O3A ADP 225 A 1 HETATM 9 O O5' ADP . . . B 2 5.951 19.525 11.021 1 38.77 ? O5' ADP 225 A 1 HETATM 10 C C5' ADP . . . B 2 4.839 18.932 10.326 1 36.13 ? C5' ADP 225 A 1 HETATM 11 C C4' ADP . . . B 2 5.277 17.528 9.91 1 37.5 ? C4' ADP 225 A 1 HETATM 12 O O4' ADP . . . B 2 6.398 17.638 9.012 1 36.49 ? O4' ADP 225 A 1 HETATM 13 C C3' ADP . . . B 2 5.765 16.693 11.09 1 36.95 ? C3' ADP 225 A 1 HETATM 14 O O3' ADP . . . B 2 5.468 15.307 10.905 1 42.03 ? O3' ADP 225 A 1 HETATM 15 C C2' ADP . . . B 2 7.269 16.869 11.06 1 36.68 ? C2' ADP 225 A 1 HETATM 16 O O2' ADP . . . B 2 7.954 15.809 11.742 1 37.45 ? O2' ADP 225 A 1 HETATM 17 C C1' ADP . . . B 2 7.523 16.929 9.566 1 35.52 ? C1' ADP 225 A 1 HETATM 18 N N9 ADP . . . B 2 8.798 17.644 9.248 1 32.63 ? N9 ADP 225 A 1 HETATM 19 C C8 ADP . . . B 2 8.995 18.954 9.416 1 30.77 ? C8 ADP 225 A 1 HETATM 20 N N7 ADP . . . B 2 10.28 19.233 9.203 1 30.75 ? N7 ADP 225 A 1 HETATM 21 C C5 ADP . . . B 2 10.904 18.122 8.899 1 31.84 ? C5 ADP 225 A 1 HETATM 22 C C6 ADP . . . B 2 12.204 17.786 8.582 1 31.43 ? C6 ADP 225 A 1 HETATM 23 N N6 ADP . . . B 2 13.165 18.722 8.595 1 28 ? N6 ADP 225 A 1 HETATM 24 N N1 ADP . . . B 2 12.516 16.504 8.292 1 32.11 ? N1 ADP 225 A 1 HETATM 25 C C2 ADP . . . B 2 11.591 15.541 8.322 1 33.14 ? C2 ADP 225 A 1 HETATM 26 N N3 ADP . . . B 2 10.338 15.849 8.642 1 33.46 ? N3 ADP 225 A 1 HETATM 27 C C4 ADP . . . B 2 9.952 17.098 8.921 1 32.98 ? C4 ADP 225 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #