data_1DAE # _model_server_result.job_id FVyz1umkbLDS0_Hz-2OuGQ _model_server_result.datetime_utc '2024-11-22 11:40:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":225}' # _entry.id 1DAE # _exptl.entry_id 1DAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 231.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(1-AMINOETHYL)NONANEDIOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.1 _cell.angle_gamma 90 _cell.entry_id 1DAE _cell.length_a 73.2 _cell.length_b 49.2 _cell.length_c 61.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H21 N O4' _chem_comp.formula_weight 231.289 _chem_comp.id IKT _chem_comp.mon_nstd_flag . _chem_comp.name '3-(1-AMINOETHYL)NONANEDIOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 IKT doub 152 n n C1 O2 IKT sing 153 n n C1 C2 IKT sing 154 n n O2 HO2 IKT sing 155 n n C2 C3 IKT sing 156 n n C2 H21 IKT sing 157 n n C2 H22 IKT sing 158 n n C3 C4 IKT sing 159 n n C3 C1' IKT sing 160 n n C3 H3 IKT sing 161 n n C4 C5 IKT sing 162 n n C4 H41 IKT sing 163 n n C4 H42 IKT sing 164 n n C5 C6 IKT sing 165 n n C5 H51 IKT sing 166 n n C5 H52 IKT sing 167 n n C6 C7 IKT sing 168 n n C6 H61 IKT sing 169 n n C6 H62 IKT sing 170 n n C7 C8 IKT sing 171 n n C7 H71 IKT sing 172 n n C7 H72 IKT sing 173 n n C8 C9 IKT sing 174 n n C8 H81 IKT sing 175 n n C8 H82 IKT sing 176 n n C9 O3 IKT doub 177 n n C9 O4 IKT sing 178 n n O4 HO4 IKT sing 179 n n C1' C2' IKT sing 180 n n C1' N1' IKT sing 181 n n C1' H1' IKT sing 182 n n C2' "H2'1" IKT sing 183 n n C2' "H2'2" IKT sing 184 n n C2' "H2'3" IKT sing 185 n n N1' HN11 IKT sing 186 n n N1' HN12 IKT sing 187 n n # _atom_sites.entry_id 1DAE _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IKT A 1 225 225 IKT IKT . C 3 HOH A 1 226 226 HOH HOH . C 3 HOH A 2 227 227 HOH HOH . C 3 HOH A 3 228 228 HOH HOH . C 3 HOH A 4 229 229 HOH HOH . C 3 HOH A 5 230 230 HOH HOH . C 3 HOH A 6 231 231 HOH HOH . C 3 HOH A 7 232 232 HOH HOH . C 3 HOH A 8 233 233 HOH HOH . C 3 HOH A 9 234 234 HOH HOH . C 3 HOH A 10 235 235 HOH HOH . C 3 HOH A 11 236 236 HOH HOH . C 3 HOH A 12 237 237 HOH HOH . C 3 HOH A 13 238 238 HOH HOH . C 3 HOH A 14 239 239 HOH HOH . C 3 HOH A 15 240 240 HOH HOH . C 3 HOH A 16 241 241 HOH HOH . C 3 HOH A 17 242 242 HOH HOH . C 3 HOH A 18 243 243 HOH HOH . C 3 HOH A 19 244 244 HOH HOH . C 3 HOH A 20 245 245 HOH HOH . C 3 HOH A 21 246 246 HOH HOH . C 3 HOH A 22 247 247 HOH HOH . C 3 HOH A 23 248 248 HOH HOH . C 3 HOH A 24 249 249 HOH HOH . C 3 HOH A 25 250 250 HOH HOH . C 3 HOH A 26 251 251 HOH HOH . C 3 HOH A 27 252 252 HOH HOH . C 3 HOH A 28 253 253 HOH HOH . C 3 HOH A 29 254 254 HOH HOH . C 3 HOH A 30 255 255 HOH HOH . C 3 HOH A 31 256 256 HOH HOH . C 3 HOH A 32 257 257 HOH HOH . C 3 HOH A 33 258 258 HOH HOH . C 3 HOH A 34 259 259 HOH HOH . C 3 HOH A 35 260 260 HOH HOH . C 3 HOH A 36 261 261 HOH HOH . C 3 HOH A 37 262 262 HOH HOH . C 3 HOH A 38 263 263 HOH HOH . C 3 HOH A 39 264 264 HOH HOH . C 3 HOH A 40 265 265 HOH HOH . C 3 HOH A 41 266 266 HOH HOH . C 3 HOH A 42 267 267 HOH HOH . C 3 HOH A 43 268 268 HOH HOH . C 3 HOH A 44 269 269 HOH HOH . C 3 HOH A 45 270 270 HOH HOH . C 3 HOH A 46 271 271 HOH HOH . C 3 HOH A 47 272 272 HOH HOH . C 3 HOH A 48 273 273 HOH HOH . C 3 HOH A 49 274 274 HOH HOH . C 3 HOH A 50 275 275 HOH HOH . C 3 HOH A 51 276 276 HOH HOH . C 3 HOH A 52 277 277 HOH HOH . C 3 HOH A 53 278 278 HOH HOH . C 3 HOH A 54 279 279 HOH HOH . C 3 HOH A 55 280 280 HOH HOH . C 3 HOH A 56 281 281 HOH HOH . C 3 HOH A 57 282 282 HOH HOH . C 3 HOH A 58 283 283 HOH HOH . C 3 HOH A 59 284 284 HOH HOH . C 3 HOH A 60 285 285 HOH HOH . C 3 HOH A 61 286 286 HOH HOH . C 3 HOH A 62 287 287 HOH HOH . C 3 HOH A 63 288 288 HOH HOH . C 3 HOH A 64 289 289 HOH HOH . C 3 HOH A 65 290 290 HOH HOH . C 3 HOH A 66 291 291 HOH HOH . C 3 HOH A 67 292 292 HOH HOH . C 3 HOH A 68 293 293 HOH HOH . C 3 HOH A 69 294 294 HOH HOH . C 3 HOH A 70 295 295 HOH HOH . C 3 HOH A 71 296 296 HOH HOH . C 3 HOH A 72 297 297 HOH HOH . C 3 HOH A 73 298 298 HOH HOH . C 3 HOH A 74 299 299 HOH HOH . C 3 HOH A 75 300 300 HOH HOH . C 3 HOH A 76 301 301 HOH HOH . C 3 HOH A 77 302 302 HOH HOH . C 3 HOH A 78 303 303 HOH HOH . C 3 HOH A 79 304 304 HOH HOH . C 3 HOH A 80 305 305 HOH HOH . C 3 HOH A 81 306 306 HOH HOH . C 3 HOH A 82 307 307 HOH HOH . C 3 HOH A 83 308 308 HOH HOH . C 3 HOH A 84 309 309 HOH HOH . C 3 HOH A 85 310 310 HOH HOH . C 3 HOH A 86 311 311 HOH HOH . C 3 HOH A 87 312 312 HOH HOH . C 3 HOH A 88 313 313 HOH HOH . C 3 HOH A 89 314 314 HOH HOH . C 3 HOH A 90 315 315 HOH HOH . C 3 HOH A 91 316 316 HOH HOH . C 3 HOH A 92 317 317 HOH HOH . C 3 HOH A 93 318 318 HOH HOH . C 3 HOH A 94 319 319 HOH HOH . C 3 HOH A 95 320 320 HOH HOH . C 3 HOH A 96 321 321 HOH HOH . C 3 HOH A 97 322 322 HOH HOH . C 3 HOH A 98 323 323 HOH HOH . C 3 HOH A 99 324 324 HOH HOH . C 3 HOH A 100 325 325 HOH HOH . C 3 HOH A 101 326 326 HOH HOH . C 3 HOH A 102 327 327 HOH HOH . C 3 HOH A 103 328 328 HOH HOH . C 3 HOH A 104 329 329 HOH HOH . C 3 HOH A 105 330 330 HOH HOH . C 3 HOH A 106 331 331 HOH HOH . C 3 HOH A 107 332 332 HOH HOH . C 3 HOH A 108 333 333 HOH HOH . C 3 HOH A 109 334 334 HOH HOH . C 3 HOH A 110 335 335 HOH HOH . C 3 HOH A 111 336 336 HOH HOH . C 3 HOH A 112 337 337 HOH HOH . C 3 HOH A 113 338 338 HOH HOH . C 3 HOH A 114 339 339 HOH HOH . C 3 HOH A 115 340 340 HOH HOH . C 3 HOH A 116 341 341 HOH HOH . C 3 HOH A 117 342 342 HOH HOH . C 3 HOH A 118 343 343 HOH HOH . C 3 HOH A 119 344 344 HOH HOH . C 3 HOH A 120 345 345 HOH HOH . C 3 HOH A 121 346 346 HOH HOH . C 3 HOH A 122 347 347 HOH HOH . C 3 HOH A 123 348 348 HOH HOH . C 3 HOH A 124 349 349 HOH HOH . C 3 HOH A 125 350 350 HOH HOH . C 3 HOH A 126 351 351 HOH HOH . C 3 HOH A 127 352 352 HOH HOH . C 3 HOH A 128 353 353 HOH HOH . C 3 HOH A 129 354 354 HOH HOH . C 3 HOH A 130 355 355 HOH HOH . C 3 HOH A 131 356 356 HOH HOH . C 3 HOH A 132 357 357 HOH HOH . C 3 HOH A 133 358 358 HOH HOH . C 3 HOH A 134 359 359 HOH HOH . C 3 HOH A 135 360 360 HOH HOH . C 3 HOH A 136 361 361 HOH HOH . C 3 HOH A 137 362 362 HOH HOH . C 3 HOH A 138 363 363 HOH HOH . C 3 HOH A 139 364 364 HOH HOH . C 3 HOH A 140 365 365 HOH HOH . C 3 HOH A 141 366 366 HOH HOH . C 3 HOH A 142 367 367 HOH HOH . C 3 HOH A 143 368 368 HOH HOH . C 3 HOH A 144 369 369 HOH HOH . C 3 HOH A 145 370 370 HOH HOH . C 3 HOH A 146 371 371 HOH HOH . C 3 HOH A 147 372 372 HOH HOH . C 3 HOH A 148 373 373 HOH HOH . C 3 HOH A 149 374 374 HOH HOH . C 3 HOH A 150 375 375 HOH HOH . C 3 HOH A 151 376 376 HOH HOH . C 3 HOH A 152 377 377 HOH HOH . C 3 HOH A 153 378 378 HOH HOH . C 3 HOH A 154 379 379 HOH HOH . C 3 HOH A 155 380 380 HOH HOH . C 3 HOH A 156 381 381 HOH HOH . C 3 HOH A 157 382 382 HOH HOH . C 3 HOH A 158 383 383 HOH HOH . C 3 HOH A 159 384 384 HOH HOH . C 3 HOH A 160 385 385 HOH HOH . C 3 HOH A 161 386 386 HOH HOH . C 3 HOH A 162 387 387 HOH HOH . C 3 HOH A 163 388 388 HOH HOH . C 3 HOH A 164 389 389 HOH HOH . C 3 HOH A 165 390 390 HOH HOH . C 3 HOH A 166 391 391 HOH HOH . C 3 HOH A 167 392 392 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IKT . . . B 2 -2.411 24.43 15.08 1 35.03 ? C1 IKT 225 A 1 HETATM 2 O O1 IKT . . . B 2 -1.392 24.66 14.424 1 35.73 ? O1 IKT 225 A 1 HETATM 3 O O2 IKT . . . B 2 -2.416 24.413 16.323 1 33.33 ? O2 IKT 225 A 1 HETATM 4 C C2 IKT . . . B 2 -3.703 24.181 14.309 1 33.86 ? C2 IKT 225 A 1 HETATM 5 C C3 IKT . . . B 2 -3.607 24.223 12.763 1 34.48 ? C3 IKT 225 A 1 HETATM 6 C C4 IKT . . . B 2 -4.643 25.245 12.298 1 33.36 ? C4 IKT 225 A 1 HETATM 7 C C5 IKT . . . B 2 -4.776 25.452 10.805 1 27.57 ? C5 IKT 225 A 1 HETATM 8 C C6 IKT . . . B 2 -5.777 26.56 10.541 1 26.6 ? C6 IKT 225 A 1 HETATM 9 C C7 IKT . . . B 2 -5.896 26.794 9.038 1 24.82 ? C7 IKT 225 A 1 HETATM 10 C C8 IKT . . . B 2 -6.841 27.949 8.657 1 20.76 ? C8 IKT 225 A 1 HETATM 11 C C9 IKT . . . B 2 -6.84 28.14 7.141 1 21.42 ? C9 IKT 225 A 1 HETATM 12 O O3 IKT . . . B 2 -7.553 27.439 6.418 1 17.92 ? O3 IKT 225 A 1 HETATM 13 O O4 IKT . . . B 2 -6.08 28.973 6.651 1 20.33 ? O4 IKT 225 A 1 HETATM 14 C C1' IKT . . . B 2 -3.827 22.844 12.126 1 35.67 ? C1' IKT 225 A 1 HETATM 15 C C2' IKT . . . B 2 -5.04 22.152 12.732 1 36.9 ? C2' IKT 225 A 1 HETATM 16 N N1' IKT . . . B 2 -2.653 22.032 12.35 1 38.66 ? N1' IKT 225 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #