data_1DAG # _model_server_result.job_id zNuBTSSS2Pu2SCbWN0I1EA _model_server_result.datetime_utc '2024-12-04 03:08:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":225}' # _entry.id 1DAG # _exptl.entry_id 1DAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.277 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.1 _cell.angle_gamma 90 _cell.entry_id 1DAG _cell.length_a 73.2 _cell.length_b 49.2 _cell.length_c 61.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H20 N2 O4' _chem_comp.formula_weight 232.277 _chem_comp.id DSD _chem_comp.mon_nstd_flag . _chem_comp.name '7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DSD doub 134 n n C1 O2 DSD sing 135 n n C1 C2 DSD sing 136 n n O2 HO2 DSD sing 137 n n C2 C3 DSD sing 138 n n C2 H21 DSD sing 139 n n C2 H22 DSD sing 140 n n C3 C4 DSD sing 141 n n C3 H31 DSD sing 142 n n C3 H32 DSD sing 143 n n C4 C5 DSD sing 144 n n C4 H41 DSD sing 145 n n C4 H42 DSD sing 146 n n C5 C6 DSD sing 147 n n C5 H51 DSD sing 148 n n C5 H52 DSD sing 149 n n C6 C7 DSD sing 150 n n C6 H61 DSD sing 151 n n C6 H62 DSD sing 152 n n C7 C8 DSD sing 153 n n C7 N7 DSD sing 154 n n C7 H7 DSD sing 155 n n C8 C9 DSD sing 156 n n C8 N8 DSD sing 157 n n C8 H8 DSD sing 158 n n C9 H91 DSD sing 159 n n C9 H92 DSD sing 160 n n C9 H93 DSD sing 161 n n N7 C DSD sing 162 n n N7 HN7 DSD sing 163 n n C O DSD doub 164 n n C OXT DSD sing 165 n n OXT HXT DSD sing 166 n n N8 HN81 DSD sing 167 n n N8 HN82 DSD sing 168 n n # _atom_sites.entry_id 1DAG _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DSD A 1 225 225 DSD DSD . C 3 ACP A 1 226 226 ACP ACP . D 4 HOH A 1 227 227 HOH HOH . D 4 HOH A 2 228 228 HOH HOH . D 4 HOH A 3 229 229 HOH HOH . D 4 HOH A 4 230 230 HOH HOH . D 4 HOH A 5 231 231 HOH HOH . D 4 HOH A 6 232 232 HOH HOH . D 4 HOH A 7 233 233 HOH HOH . D 4 HOH A 8 234 234 HOH HOH . D 4 HOH A 9 235 235 HOH HOH . D 4 HOH A 10 236 236 HOH HOH . D 4 HOH A 11 237 237 HOH HOH . D 4 HOH A 12 238 238 HOH HOH . D 4 HOH A 13 239 239 HOH HOH . D 4 HOH A 14 240 240 HOH HOH . D 4 HOH A 15 241 241 HOH HOH . D 4 HOH A 16 242 242 HOH HOH . D 4 HOH A 17 243 243 HOH HOH . D 4 HOH A 18 244 244 HOH HOH . D 4 HOH A 19 245 245 HOH HOH . D 4 HOH A 20 246 246 HOH HOH . D 4 HOH A 21 247 247 HOH HOH . D 4 HOH A 22 248 248 HOH HOH . D 4 HOH A 23 249 249 HOH HOH . D 4 HOH A 24 250 250 HOH HOH . D 4 HOH A 25 251 251 HOH HOH . D 4 HOH A 26 252 252 HOH HOH . D 4 HOH A 27 253 253 HOH HOH . D 4 HOH A 28 254 254 HOH HOH . D 4 HOH A 29 255 255 HOH HOH . D 4 HOH A 30 256 256 HOH HOH . D 4 HOH A 31 257 257 HOH HOH . D 4 HOH A 32 258 258 HOH HOH . D 4 HOH A 33 259 259 HOH HOH . D 4 HOH A 34 260 260 HOH HOH . D 4 HOH A 35 261 261 HOH HOH . D 4 HOH A 36 262 262 HOH HOH . D 4 HOH A 37 263 263 HOH HOH . D 4 HOH A 38 264 264 HOH HOH . D 4 HOH A 39 265 265 HOH HOH . D 4 HOH A 40 266 266 HOH HOH . D 4 HOH A 41 267 267 HOH HOH . D 4 HOH A 42 268 268 HOH HOH . D 4 HOH A 43 269 269 HOH HOH . D 4 HOH A 44 270 270 HOH HOH . D 4 HOH A 45 271 271 HOH HOH . D 4 HOH A 46 272 272 HOH HOH . D 4 HOH A 47 273 273 HOH HOH . D 4 HOH A 48 274 274 HOH HOH . D 4 HOH A 49 275 275 HOH HOH . D 4 HOH A 50 276 276 HOH HOH . D 4 HOH A 51 277 277 HOH HOH . D 4 HOH A 52 278 278 HOH HOH . D 4 HOH A 53 279 279 HOH HOH . D 4 HOH A 54 280 280 HOH HOH . D 4 HOH A 55 281 281 HOH HOH . D 4 HOH A 56 282 282 HOH HOH . D 4 HOH A 57 283 283 HOH HOH . D 4 HOH A 58 284 284 HOH HOH . D 4 HOH A 59 285 285 HOH HOH . D 4 HOH A 60 286 286 HOH HOH . D 4 HOH A 61 287 287 HOH HOH . D 4 HOH A 62 288 288 HOH HOH . D 4 HOH A 63 289 289 HOH HOH . D 4 HOH A 64 290 290 HOH HOH . D 4 HOH A 65 291 291 HOH HOH . D 4 HOH A 66 292 292 HOH HOH . D 4 HOH A 67 293 293 HOH HOH . D 4 HOH A 68 294 294 HOH HOH . D 4 HOH A 69 295 295 HOH HOH . D 4 HOH A 70 296 296 HOH HOH . D 4 HOH A 71 297 297 HOH HOH . D 4 HOH A 72 298 298 HOH HOH . D 4 HOH A 73 299 299 HOH HOH . D 4 HOH A 74 300 300 HOH HOH . D 4 HOH A 75 301 301 HOH HOH . D 4 HOH A 76 302 302 HOH HOH . D 4 HOH A 77 303 303 HOH HOH . D 4 HOH A 78 304 304 HOH HOH . D 4 HOH A 79 305 305 HOH HOH . D 4 HOH A 80 306 306 HOH HOH . D 4 HOH A 81 307 307 HOH HOH . D 4 HOH A 82 308 308 HOH HOH . D 4 HOH A 83 309 309 HOH HOH . D 4 HOH A 84 310 310 HOH HOH . D 4 HOH A 85 311 311 HOH HOH . D 4 HOH A 86 312 312 HOH HOH . D 4 HOH A 87 313 313 HOH HOH . D 4 HOH A 88 314 314 HOH HOH . D 4 HOH A 89 315 315 HOH HOH . D 4 HOH A 90 316 316 HOH HOH . D 4 HOH A 91 317 317 HOH HOH . D 4 HOH A 92 318 318 HOH HOH . D 4 HOH A 93 319 319 HOH HOH . D 4 HOH A 94 320 320 HOH HOH . D 4 HOH A 95 321 321 HOH HOH . D 4 HOH A 96 322 322 HOH HOH . D 4 HOH A 97 323 323 HOH HOH . D 4 HOH A 98 324 324 HOH HOH . D 4 HOH A 99 325 325 HOH HOH . D 4 HOH A 100 326 326 HOH HOH . D 4 HOH A 101 327 327 HOH HOH . D 4 HOH A 102 328 328 HOH HOH . D 4 HOH A 103 329 329 HOH HOH . D 4 HOH A 104 330 330 HOH HOH . D 4 HOH A 105 331 331 HOH HOH . D 4 HOH A 106 332 332 HOH HOH . D 4 HOH A 107 333 333 HOH HOH . D 4 HOH A 108 334 334 HOH HOH . D 4 HOH A 109 335 335 HOH HOH . D 4 HOH A 110 336 336 HOH HOH . D 4 HOH A 111 337 337 HOH HOH . D 4 HOH A 112 338 338 HOH HOH . D 4 HOH A 113 339 339 HOH HOH . D 4 HOH A 114 340 340 HOH HOH . D 4 HOH A 115 341 341 HOH HOH . D 4 HOH A 116 342 342 HOH HOH . D 4 HOH A 117 343 343 HOH HOH . D 4 HOH A 118 344 344 HOH HOH . D 4 HOH A 119 345 345 HOH HOH . D 4 HOH A 120 346 346 HOH HOH . D 4 HOH A 121 347 347 HOH HOH . D 4 HOH A 122 348 348 HOH HOH . D 4 HOH A 123 349 349 HOH HOH . D 4 HOH A 124 350 350 HOH HOH . D 4 HOH A 125 351 351 HOH HOH . D 4 HOH A 126 352 352 HOH HOH . D 4 HOH A 127 353 353 HOH HOH . D 4 HOH A 128 354 354 HOH HOH . D 4 HOH A 129 355 355 HOH HOH . D 4 HOH A 130 356 356 HOH HOH . D 4 HOH A 131 357 357 HOH HOH . D 4 HOH A 132 358 358 HOH HOH . D 4 HOH A 133 359 359 HOH HOH . D 4 HOH A 134 360 360 HOH HOH . D 4 HOH A 135 361 361 HOH HOH . D 4 HOH A 136 362 362 HOH HOH . D 4 HOH A 137 363 363 HOH HOH . D 4 HOH A 138 364 364 HOH HOH . D 4 HOH A 139 365 365 HOH HOH . D 4 HOH A 140 366 366 HOH HOH . D 4 HOH A 141 367 367 HOH HOH . D 4 HOH A 142 368 368 HOH HOH . D 4 HOH A 143 369 369 HOH HOH . D 4 HOH A 144 370 370 HOH HOH . D 4 HOH A 145 371 371 HOH HOH . D 4 HOH A 146 372 372 HOH HOH . D 4 HOH A 147 373 373 HOH HOH . D 4 HOH A 148 374 374 HOH HOH . D 4 HOH A 149 375 375 HOH HOH . D 4 HOH A 150 376 376 HOH HOH . D 4 HOH A 151 377 377 HOH HOH . D 4 HOH A 152 378 378 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DSD . . . B 2 -6.785 28.224 7.207 1 25.17 ? C1 DSD 225 A 1 HETATM 2 O O1 DSD . . . B 2 -7.5 27.505 6.485 1 19.85 ? O1 DSD 225 A 1 HETATM 3 O O2 DSD . . . B 2 -6.043 29.094 6.726 1 24.75 ? O2 DSD 225 A 1 HETATM 4 C C2 DSD . . . B 2 -6.787 28.036 8.729 1 24.15 ? C2 DSD 225 A 1 HETATM 5 C C3 DSD . . . B 2 -5.83 26.905 9.098 1 27.16 ? C3 DSD 225 A 1 HETATM 6 C C4 DSD . . . B 2 -5.669 26.753 10.61 1 29.44 ? C4 DSD 225 A 1 HETATM 7 C C5 DSD . . . B 2 -4.683 25.629 10.923 1 31.13 ? C5 DSD 225 A 1 HETATM 8 C C6 DSD . . . B 2 -4.421 25.398 12.411 1 36.57 ? C6 DSD 225 A 1 HETATM 9 C C7 DSD . . . B 2 -3.45 24.212 12.742 1 39.68 ? C7 DSD 225 A 1 HETATM 10 C C8 DSD . . . B 2 -3.885 22.855 12.077 1 39.99 ? C8 DSD 225 A 1 HETATM 11 C C9 DSD . . . B 2 -5.222 22.315 12.618 1 38.03 ? C9 DSD 225 A 1 HETATM 12 N N7 DSD . . . B 2 -3.404 23.982 14.199 1 41.72 ? N7 DSD 225 A 1 HETATM 13 C C DSD . . . B 2 -2.395 24.351 14.996 1 44.03 ? C DSD 225 A 1 HETATM 14 O O DSD . . . B 2 -1.45 24.993 14.518 1 45.8 ? O DSD 225 A 1 HETATM 15 O OXT DSD . . . B 2 -2.461 24.044 16.19 1 42.01 ? OXT DSD 225 A 1 HETATM 16 N N8 DSD . . . B 2 -2.88 21.817 12.3 1 41.64 ? N8 DSD 225 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #