data_1DAH # _model_server_result.job_id NXrMZeldg_yrrcaPBlQDDg _model_server_result.datetime_utc '2024-11-15 22:44:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":225}' # _entry.id 1DAH # _exptl.entry_id 1DAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.267 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7,8-DIAMINO-NONANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.1 _cell.angle_gamma 90 _cell.entry_id 1DAH _cell.length_a 73.2 _cell.length_b 49.2 _cell.length_c 61.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 16 A THR 16 1_555 B MN MN . A MN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A OD2 ASP 54 A ASP 54 1_555 B MN MN . A MN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 A OE2 GLU 115 A GLU 115 1_555 B MN MN . A MN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc4 D O2G ACP . A ACP 226 1_555 B MN MN . A MN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 D O1B ACP . A ACP 226 1_555 B MN MN . A MN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'C9 H20 N2 O2' _chem_comp.formula_weight 188.267 _chem_comp.id DNN _chem_comp.mon_nstd_flag . _chem_comp.name '7,8-DIAMINO-NONANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DNN doub 134 n n C1 O2 DNN sing 135 n n C1 C2 DNN sing 136 n n O2 HO2 DNN sing 137 n n C2 C3 DNN sing 138 n n C2 H21 DNN sing 139 n n C2 H22 DNN sing 140 n n C3 C4 DNN sing 141 n n C3 H31 DNN sing 142 n n C3 H32 DNN sing 143 n n C4 C5 DNN sing 144 n n C4 H41 DNN sing 145 n n C4 H42 DNN sing 146 n n C5 C6 DNN sing 147 n n C5 H51 DNN sing 148 n n C5 H52 DNN sing 149 n n C6 C7 DNN sing 150 n n C6 H61 DNN sing 151 n n C6 H62 DNN sing 152 n n C7 C8 DNN sing 153 n n C7 N7 DNN sing 154 n n C7 H7 DNN sing 155 n n C8 C9 DNN sing 156 n n C8 N8 DNN sing 157 n n C8 H8 DNN sing 158 n n C9 H91 DNN sing 159 n n C9 H92 DNN sing 160 n n C9 H93 DNN sing 161 n n N7 HN71 DNN sing 162 n n N7 HN72 DNN sing 163 n n N8 HN81 DNN sing 164 n n N8 HN82 DNN sing 165 n n # _atom_sites.entry_id 1DAH _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 369 369 MN MN . C 3 DNN A 1 225 225 DNN DNN . D 4 ACP A 1 226 226 ACP ACP . E 5 HOH A 1 227 227 HOH HOH . E 5 HOH A 2 228 228 HOH HOH . E 5 HOH A 3 229 229 HOH HOH . E 5 HOH A 4 230 230 HOH HOH . E 5 HOH A 5 231 231 HOH HOH . E 5 HOH A 6 232 232 HOH HOH . E 5 HOH A 7 233 233 HOH HOH . E 5 HOH A 8 234 234 HOH HOH . E 5 HOH A 9 235 235 HOH HOH . E 5 HOH A 10 236 236 HOH HOH . E 5 HOH A 11 237 237 HOH HOH . E 5 HOH A 12 238 238 HOH HOH . E 5 HOH A 13 239 239 HOH HOH . E 5 HOH A 14 240 240 HOH HOH . E 5 HOH A 15 241 241 HOH HOH . E 5 HOH A 16 242 242 HOH HOH . E 5 HOH A 17 243 243 HOH HOH . E 5 HOH A 18 244 244 HOH HOH . E 5 HOH A 19 245 245 HOH HOH . E 5 HOH A 20 246 246 HOH HOH . E 5 HOH A 21 247 247 HOH HOH . E 5 HOH A 22 248 248 HOH HOH . E 5 HOH A 23 249 249 HOH HOH . E 5 HOH A 24 250 250 HOH HOH . E 5 HOH A 25 251 251 HOH HOH . E 5 HOH A 26 252 252 HOH HOH . E 5 HOH A 27 253 253 HOH HOH . E 5 HOH A 28 254 254 HOH HOH . E 5 HOH A 29 255 255 HOH HOH . E 5 HOH A 30 256 256 HOH HOH . E 5 HOH A 31 257 257 HOH HOH . E 5 HOH A 32 258 258 HOH HOH . E 5 HOH A 33 259 259 HOH HOH . E 5 HOH A 34 260 260 HOH HOH . E 5 HOH A 35 261 261 HOH HOH . E 5 HOH A 36 262 262 HOH HOH . E 5 HOH A 37 263 263 HOH HOH . E 5 HOH A 38 264 264 HOH HOH . E 5 HOH A 39 265 265 HOH HOH . E 5 HOH A 40 266 266 HOH HOH . E 5 HOH A 41 267 267 HOH HOH . E 5 HOH A 42 268 268 HOH HOH . E 5 HOH A 43 269 269 HOH HOH . E 5 HOH A 44 270 270 HOH HOH . E 5 HOH A 45 271 271 HOH HOH . E 5 HOH A 46 272 272 HOH HOH . E 5 HOH A 47 273 273 HOH HOH . E 5 HOH A 48 274 274 HOH HOH . E 5 HOH A 49 275 275 HOH HOH . E 5 HOH A 50 276 276 HOH HOH . E 5 HOH A 51 277 277 HOH HOH . E 5 HOH A 52 278 278 HOH HOH . E 5 HOH A 53 279 279 HOH HOH . E 5 HOH A 54 280 280 HOH HOH . E 5 HOH A 55 281 281 HOH HOH . E 5 HOH A 56 282 282 HOH HOH . E 5 HOH A 57 283 283 HOH HOH . E 5 HOH A 58 284 284 HOH HOH . E 5 HOH A 59 285 285 HOH HOH . E 5 HOH A 60 286 286 HOH HOH . E 5 HOH A 61 287 287 HOH HOH . E 5 HOH A 62 288 288 HOH HOH . E 5 HOH A 63 289 289 HOH HOH . E 5 HOH A 64 290 290 HOH HOH . E 5 HOH A 65 291 291 HOH HOH . E 5 HOH A 66 292 292 HOH HOH . E 5 HOH A 67 293 293 HOH HOH . E 5 HOH A 68 294 294 HOH HOH . E 5 HOH A 69 295 295 HOH HOH . E 5 HOH A 70 296 296 HOH HOH . E 5 HOH A 71 297 297 HOH HOH . E 5 HOH A 72 298 298 HOH HOH . E 5 HOH A 73 299 299 HOH HOH . E 5 HOH A 74 300 300 HOH HOH . E 5 HOH A 75 301 301 HOH HOH . E 5 HOH A 76 302 302 HOH HOH . E 5 HOH A 77 303 303 HOH HOH . E 5 HOH A 78 304 304 HOH HOH . E 5 HOH A 79 305 305 HOH HOH . E 5 HOH A 80 306 306 HOH HOH . E 5 HOH A 81 307 307 HOH HOH . E 5 HOH A 82 308 308 HOH HOH . E 5 HOH A 83 309 309 HOH HOH . E 5 HOH A 84 310 310 HOH HOH . E 5 HOH A 85 311 311 HOH HOH . E 5 HOH A 86 312 312 HOH HOH . E 5 HOH A 87 313 313 HOH HOH . E 5 HOH A 88 314 314 HOH HOH . E 5 HOH A 89 315 315 HOH HOH . E 5 HOH A 90 316 316 HOH HOH . E 5 HOH A 91 317 317 HOH HOH . E 5 HOH A 92 318 318 HOH HOH . E 5 HOH A 93 319 319 HOH HOH . E 5 HOH A 94 320 320 HOH HOH . E 5 HOH A 95 321 321 HOH HOH . E 5 HOH A 96 322 322 HOH HOH . E 5 HOH A 97 323 323 HOH HOH . E 5 HOH A 98 324 324 HOH HOH . E 5 HOH A 99 325 325 HOH HOH . E 5 HOH A 100 326 326 HOH HOH . E 5 HOH A 101 327 327 HOH HOH . E 5 HOH A 102 328 328 HOH HOH . E 5 HOH A 103 329 329 HOH HOH . E 5 HOH A 104 330 330 HOH HOH . E 5 HOH A 105 331 331 HOH HOH . E 5 HOH A 106 332 332 HOH HOH . E 5 HOH A 107 333 333 HOH HOH . E 5 HOH A 108 334 334 HOH HOH . E 5 HOH A 109 335 335 HOH HOH . E 5 HOH A 110 336 336 HOH HOH . E 5 HOH A 111 337 337 HOH HOH . E 5 HOH A 112 338 338 HOH HOH . E 5 HOH A 113 339 339 HOH HOH . E 5 HOH A 114 340 340 HOH HOH . E 5 HOH A 115 341 341 HOH HOH . E 5 HOH A 116 342 342 HOH HOH . E 5 HOH A 117 343 343 HOH HOH . E 5 HOH A 118 344 344 HOH HOH . E 5 HOH A 119 345 345 HOH HOH . E 5 HOH A 120 346 346 HOH HOH . E 5 HOH A 121 347 347 HOH HOH . E 5 HOH A 122 348 348 HOH HOH . E 5 HOH A 123 349 349 HOH HOH . E 5 HOH A 124 350 350 HOH HOH . E 5 HOH A 125 351 351 HOH HOH . E 5 HOH A 126 352 352 HOH HOH . E 5 HOH A 127 353 353 HOH HOH . E 5 HOH A 128 354 354 HOH HOH . E 5 HOH A 129 355 355 HOH HOH . E 5 HOH A 130 356 356 HOH HOH . E 5 HOH A 131 357 357 HOH HOH . E 5 HOH A 132 358 358 HOH HOH . E 5 HOH A 133 359 359 HOH HOH . E 5 HOH A 134 360 360 HOH HOH . E 5 HOH A 135 361 361 HOH HOH . E 5 HOH A 136 362 362 HOH HOH . E 5 HOH A 137 363 363 HOH HOH . E 5 HOH A 138 364 364 HOH HOH . E 5 HOH A 139 365 365 HOH HOH . E 5 HOH A 140 366 366 HOH HOH . E 5 HOH A 141 367 367 HOH HOH . E 5 HOH A 142 368 368 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DNN . . . C 3 -6.842 28.178 7.14 1 23.64 ? C1 DNN 225 A 1 HETATM 2 O O1 DNN . . . C 3 -7.536 27.474 6.409 1 19.47 ? O1 DNN 225 A 1 HETATM 3 O O2 DNN . . . C 3 -6.071 29.021 6.67 1 21.33 ? O2 DNN 225 A 1 HETATM 4 C C2 DNN . . . C 3 -6.847 27.956 8.656 1 23.48 ? C2 DNN 225 A 1 HETATM 5 C C3 DNN . . . C 3 -5.783 26.906 9.011 1 26.14 ? C3 DNN 225 A 1 HETATM 6 C C4 DNN . . . C 3 -5.618 26.637 10.496 1 28.86 ? C4 DNN 225 A 1 HETATM 7 C C5 DNN . . . C 3 -4.558 25.556 10.687 1 30.69 ? C5 DNN 225 A 1 HETATM 8 C C6 DNN . . . C 3 -4.371 25.265 12.165 1 35.33 ? C6 DNN 225 A 1 HETATM 9 C C7 DNN . . . C 3 -3.402 24.136 12.587 1 36.06 ? C7 DNN 225 A 1 HETATM 10 C C8 DNN . . . C 3 -3.823 22.771 11.969 1 36.81 ? C8 DNN 225 A 1 HETATM 11 C C9 DNN . . . C 3 -5.109 22.26 12.593 1 35.75 ? C9 DNN 225 A 1 HETATM 12 N N7 DNN . . . C 3 -3.491 24.084 14.035 1 36.09 ? N7 DNN 225 A 1 HETATM 13 N N8 DNN . . . C 3 -2.802 21.75 12.142 1 39.15 ? N8 DNN 225 A 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #