data_1DAI # _model_server_result.job_id 4U2SbvqPdvRoV4wquARaYQ _model_server_result.datetime_utc '2024-12-04 15:15:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":225}' # _entry.id 1DAI # _exptl.entry_id 1DAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.277 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.1 _cell.angle_gamma 90 _cell.entry_id 1DAI _cell.length_a 73.2 _cell.length_b 49.2 _cell.length_c 61.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H20 N2 O4' _chem_comp.formula_weight 232.277 _chem_comp.id DSD _chem_comp.mon_nstd_flag . _chem_comp.name '7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DSD doub 83 n n C1 O2 DSD sing 84 n n C1 C2 DSD sing 85 n n O2 HO2 DSD sing 86 n n C2 C3 DSD sing 87 n n C2 H21 DSD sing 88 n n C2 H22 DSD sing 89 n n C3 C4 DSD sing 90 n n C3 H31 DSD sing 91 n n C3 H32 DSD sing 92 n n C4 C5 DSD sing 93 n n C4 H41 DSD sing 94 n n C4 H42 DSD sing 95 n n C5 C6 DSD sing 96 n n C5 H51 DSD sing 97 n n C5 H52 DSD sing 98 n n C6 C7 DSD sing 99 n n C6 H61 DSD sing 100 n n C6 H62 DSD sing 101 n n C7 C8 DSD sing 102 n n C7 N7 DSD sing 103 n n C7 H7 DSD sing 104 n n C8 C9 DSD sing 105 n n C8 N8 DSD sing 106 n n C8 H8 DSD sing 107 n n C9 H91 DSD sing 108 n n C9 H92 DSD sing 109 n n C9 H93 DSD sing 110 n n N7 C DSD sing 111 n n N7 HN7 DSD sing 112 n n C O DSD doub 113 n n C OXT DSD sing 114 n n OXT HXT DSD sing 115 n n N8 HN81 DSD sing 116 n n N8 HN82 DSD sing 117 n n # _atom_sites.entry_id 1DAI _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DSD A 1 225 225 DSD DSD . C 3 HOH A 1 226 226 HOH HOH . C 3 HOH A 2 227 227 HOH HOH . C 3 HOH A 3 228 228 HOH HOH . C 3 HOH A 4 229 229 HOH HOH . C 3 HOH A 5 230 230 HOH HOH . C 3 HOH A 6 231 231 HOH HOH . C 3 HOH A 7 232 232 HOH HOH . C 3 HOH A 8 233 233 HOH HOH . C 3 HOH A 9 234 234 HOH HOH . C 3 HOH A 10 235 235 HOH HOH . C 3 HOH A 11 236 236 HOH HOH . C 3 HOH A 12 237 237 HOH HOH . C 3 HOH A 13 238 238 HOH HOH . C 3 HOH A 14 239 239 HOH HOH . C 3 HOH A 15 240 240 HOH HOH . C 3 HOH A 16 241 241 HOH HOH . C 3 HOH A 17 242 242 HOH HOH . C 3 HOH A 18 243 243 HOH HOH . C 3 HOH A 19 244 244 HOH HOH . C 3 HOH A 20 245 245 HOH HOH . C 3 HOH A 21 246 246 HOH HOH . C 3 HOH A 22 247 247 HOH HOH . C 3 HOH A 23 248 248 HOH HOH . C 3 HOH A 24 249 249 HOH HOH . C 3 HOH A 25 250 250 HOH HOH . C 3 HOH A 26 251 251 HOH HOH . C 3 HOH A 27 252 252 HOH HOH . C 3 HOH A 28 253 253 HOH HOH . C 3 HOH A 29 254 254 HOH HOH . C 3 HOH A 30 255 255 HOH HOH . C 3 HOH A 31 256 256 HOH HOH . C 3 HOH A 32 257 257 HOH HOH . C 3 HOH A 33 258 258 HOH HOH . C 3 HOH A 34 259 259 HOH HOH . C 3 HOH A 35 260 260 HOH HOH . C 3 HOH A 36 261 261 HOH HOH . C 3 HOH A 37 262 262 HOH HOH . C 3 HOH A 38 263 263 HOH HOH . C 3 HOH A 39 264 264 HOH HOH . C 3 HOH A 40 265 265 HOH HOH . C 3 HOH A 41 266 266 HOH HOH . C 3 HOH A 42 267 267 HOH HOH . C 3 HOH A 43 268 268 HOH HOH . C 3 HOH A 44 269 269 HOH HOH . C 3 HOH A 45 270 270 HOH HOH . C 3 HOH A 46 271 271 HOH HOH . C 3 HOH A 47 272 272 HOH HOH . C 3 HOH A 48 273 273 HOH HOH . C 3 HOH A 49 274 274 HOH HOH . C 3 HOH A 50 275 275 HOH HOH . C 3 HOH A 51 276 276 HOH HOH . C 3 HOH A 52 277 277 HOH HOH . C 3 HOH A 53 278 278 HOH HOH . C 3 HOH A 54 279 279 HOH HOH . C 3 HOH A 55 280 280 HOH HOH . C 3 HOH A 56 281 281 HOH HOH . C 3 HOH A 57 282 282 HOH HOH . C 3 HOH A 58 283 283 HOH HOH . C 3 HOH A 59 284 284 HOH HOH . C 3 HOH A 60 285 285 HOH HOH . C 3 HOH A 61 286 286 HOH HOH . C 3 HOH A 62 287 287 HOH HOH . C 3 HOH A 63 288 288 HOH HOH . C 3 HOH A 64 289 289 HOH HOH . C 3 HOH A 65 290 290 HOH HOH . C 3 HOH A 66 291 291 HOH HOH . C 3 HOH A 67 292 292 HOH HOH . C 3 HOH A 68 293 293 HOH HOH . C 3 HOH A 69 294 294 HOH HOH . C 3 HOH A 70 295 295 HOH HOH . C 3 HOH A 71 296 296 HOH HOH . C 3 HOH A 72 297 297 HOH HOH . C 3 HOH A 73 298 298 HOH HOH . C 3 HOH A 74 299 299 HOH HOH . C 3 HOH A 75 300 300 HOH HOH . C 3 HOH A 76 301 301 HOH HOH . C 3 HOH A 77 302 302 HOH HOH . C 3 HOH A 78 303 303 HOH HOH . C 3 HOH A 79 304 304 HOH HOH . C 3 HOH A 80 305 305 HOH HOH . C 3 HOH A 81 306 306 HOH HOH . C 3 HOH A 82 307 307 HOH HOH . C 3 HOH A 83 308 308 HOH HOH . C 3 HOH A 84 309 309 HOH HOH . C 3 HOH A 85 310 310 HOH HOH . C 3 HOH A 86 311 311 HOH HOH . C 3 HOH A 87 312 312 HOH HOH . C 3 HOH A 88 313 313 HOH HOH . C 3 HOH A 89 314 314 HOH HOH . C 3 HOH A 90 315 315 HOH HOH . C 3 HOH A 91 316 316 HOH HOH . C 3 HOH A 92 317 317 HOH HOH . C 3 HOH A 93 318 318 HOH HOH . C 3 HOH A 94 319 319 HOH HOH . C 3 HOH A 95 320 320 HOH HOH . C 3 HOH A 96 321 321 HOH HOH . C 3 HOH A 97 322 322 HOH HOH . C 3 HOH A 98 323 323 HOH HOH . C 3 HOH A 99 324 324 HOH HOH . C 3 HOH A 100 325 325 HOH HOH . C 3 HOH A 101 326 326 HOH HOH . C 3 HOH A 102 327 327 HOH HOH . C 3 HOH A 103 328 328 HOH HOH . C 3 HOH A 104 329 329 HOH HOH . C 3 HOH A 105 330 330 HOH HOH . C 3 HOH A 106 331 331 HOH HOH . C 3 HOH A 107 332 332 HOH HOH . C 3 HOH A 108 333 333 HOH HOH . C 3 HOH A 109 334 334 HOH HOH . C 3 HOH A 110 335 335 HOH HOH . C 3 HOH A 111 336 336 HOH HOH . C 3 HOH A 112 337 337 HOH HOH . C 3 HOH A 113 338 338 HOH HOH . C 3 HOH A 114 339 339 HOH HOH . C 3 HOH A 115 340 340 HOH HOH . C 3 HOH A 116 341 341 HOH HOH . C 3 HOH A 117 342 342 HOH HOH . C 3 HOH A 118 343 343 HOH HOH . C 3 HOH A 119 344 344 HOH HOH . C 3 HOH A 120 345 345 HOH HOH . C 3 HOH A 121 346 346 HOH HOH . C 3 HOH A 122 347 347 HOH HOH . C 3 HOH A 123 348 348 HOH HOH . C 3 HOH A 124 349 349 HOH HOH . C 3 HOH A 125 350 350 HOH HOH . C 3 HOH A 126 351 351 HOH HOH . C 3 HOH A 127 352 352 HOH HOH . C 3 HOH A 128 353 353 HOH HOH . C 3 HOH A 129 354 354 HOH HOH . C 3 HOH A 130 355 355 HOH HOH . C 3 HOH A 131 356 356 HOH HOH . C 3 HOH A 132 357 357 HOH HOH . C 3 HOH A 133 358 358 HOH HOH . C 3 HOH A 134 359 359 HOH HOH . C 3 HOH A 135 360 360 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DSD . . . B 2 -6.812 28.145 7.158 1 26.56 ? C1 DSD 225 A 1 HETATM 2 O O1 DSD . . . B 2 -7.505 27.396 6.425 1 23.59 ? O1 DSD 225 A 1 HETATM 3 O O2 DSD . . . B 2 -6.108 29.056 6.731 1 24.03 ? O2 DSD 225 A 1 HETATM 4 C C2 DSD . . . B 2 -6.777 27.979 8.681 1 25.84 ? C2 DSD 225 A 1 HETATM 5 C C3 DSD . . . B 2 -5.797 26.876 9.096 1 25.45 ? C3 DSD 225 A 1 HETATM 6 C C4 DSD . . . B 2 -5.749 26.665 10.6 1 24.33 ? C4 DSD 225 A 1 HETATM 7 C C5 DSD . . . B 2 -4.792 25.519 10.914 1 26.69 ? C5 DSD 225 A 1 HETATM 8 C C6 DSD . . . B 2 -4.769 25.26 12.414 1 31.27 ? C6 DSD 225 A 1 HETATM 9 C C7 DSD . . . B 2 -3.613 24.415 12.915 1 32.72 ? C7 DSD 225 A 1 HETATM 10 C C8 DSD . . . B 2 -3.644 23.023 12.326 1 35.23 ? C8 DSD 225 A 1 HETATM 11 C C9 DSD . . . B 2 -4.863 22.254 12.806 1 35.84 ? C9 DSD 225 A 1 HETATM 12 N N7 DSD . . . B 2 -3.683 24.295 14.372 1 32.84 ? N7 DSD 225 A 1 HETATM 13 C C DSD . . . B 2 -2.615 24.505 15.165 1 35.14 ? C DSD 225 A 1 HETATM 14 O O DSD . . . B 2 -1.519 24.695 14.666 1 38.1 ? O DSD 225 A 1 HETATM 15 O OXT DSD . . . B 2 -2.722 24.509 16.382 1 33.9 ? OXT DSD 225 A 1 HETATM 16 N N8 DSD . . . B 2 -2.432 22.399 12.817 1 38.4 ? N8 DSD 225 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #