data_1DAJ # _model_server_result.job_id sj3UjpFfrOLwz_oyNXDuNA _model_server_result.datetime_utc '2025-04-27 19:34:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1daj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 1DAJ # _exptl.entry_id 1DAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.85 _cell.angle_gamma 90 _cell.entry_id 1DAJ _cell.length_a 37.171 _cell.length_b 43.094 _cell.length_c 61.049 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 293 n n PA O2A NDP sing 294 n n PA O5B NDP sing 295 n n PA O3 NDP sing 296 n n O2A HOA2 NDP sing 297 n n O5B C5B NDP sing 298 n n C5B C4B NDP sing 299 n n C5B H51A NDP sing 300 n n C5B H52A NDP sing 301 n n C4B O4B NDP sing 302 n n C4B C3B NDP sing 303 n n C4B H4B NDP sing 304 n n O4B C1B NDP sing 305 n n C3B O3B NDP sing 306 n n C3B C2B NDP sing 307 n n C3B H3B NDP sing 308 n n O3B HO3A NDP sing 309 n n C2B O2B NDP sing 310 n n C2B C1B NDP sing 311 n n C2B H2B NDP sing 312 n n O2B P2B NDP sing 313 n n C1B N9A NDP sing 314 n n C1B H1B NDP sing 315 n n N9A C8A NDP sing 316 n y N9A C4A NDP sing 317 n y C8A N7A NDP doub 318 n y C8A H8A NDP sing 319 n n N7A C5A NDP sing 320 n y C5A C6A NDP sing 321 n y C5A C4A NDP doub 322 n y C6A N6A NDP sing 323 n n C6A N1A NDP doub 324 n y N6A H61A NDP sing 325 n n N6A H62A NDP sing 326 n n N1A C2A NDP sing 327 n y C2A N3A NDP doub 328 n y C2A H2A NDP sing 329 n n N3A C4A NDP sing 330 n y O3 PN NDP sing 331 n n PN O1N NDP doub 332 n n PN O2N NDP sing 333 n n PN O5D NDP sing 334 n n O2N H21N NDP sing 335 n n O5D C5D NDP sing 336 n n C5D C4D NDP sing 337 n n C5D H51N NDP sing 338 n n C5D H52N NDP sing 339 n n C4D O4D NDP sing 340 n n C4D C3D NDP sing 341 n n C4D H4D NDP sing 342 n n O4D C1D NDP sing 343 n n C3D O3D NDP sing 344 n n C3D C2D NDP sing 345 n n C3D H3D NDP sing 346 n n O3D HO3N NDP sing 347 n n C2D O2D NDP sing 348 n n C2D C1D NDP sing 349 n n C2D H2D NDP sing 350 n n O2D HO2N NDP sing 351 n n C1D N1N NDP sing 352 n n C1D H1D NDP sing 353 n n N1N C2N NDP sing 354 n n N1N C6N NDP sing 355 n n C2N C3N NDP doub 356 n n C2N H2N NDP sing 357 n n C3N C7N NDP sing 358 n n C3N C4N NDP sing 359 n n C7N O7N NDP doub 360 n n C7N N7N NDP sing 361 n n N7N H71N NDP sing 362 n n N7N H72N NDP sing 363 n n C4N C5N NDP sing 364 n n C4N H41N NDP sing 365 n n C4N H42N NDP sing 366 n n C5N C6N NDP doub 367 n n C5N H5N NDP sing 368 n n C6N H6N NDP sing 369 n n P2B O1X NDP doub 370 n n P2B O2X NDP sing 371 n n P2B O3X NDP sing 372 n n O2X HOP2 NDP sing 373 n n O3X HOP3 NDP sing 374 n n # _atom_sites.entry_id 1DAJ _atom_sites.fract_transf_matrix[1][1] 0.026903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002283 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 207 207 NDP NDP . C 3 MOT A 1 208 208 MOT COE . D 4 HOH A 1 209 208 HOH HOH . D 4 HOH A 2 210 209 HOH HOH . D 4 HOH A 3 211 210 HOH HOH . D 4 HOH A 4 212 211 HOH HOH . D 4 HOH A 5 213 212 HOH HOH . D 4 HOH A 6 214 213 HOH HOH . D 4 HOH A 7 215 214 HOH HOH . D 4 HOH A 8 216 215 HOH HOH . D 4 HOH A 9 217 216 HOH HOH . D 4 HOH A 10 218 217 HOH HOH . D 4 HOH A 11 219 218 HOH HOH . D 4 HOH A 12 220 219 HOH HOH . D 4 HOH A 13 221 220 HOH HOH . D 4 HOH A 14 222 221 HOH HOH . D 4 HOH A 15 223 222 HOH HOH . D 4 HOH A 16 224 223 HOH HOH . D 4 HOH A 17 225 224 HOH HOH . D 4 HOH A 18 226 225 HOH HOH . D 4 HOH A 19 227 226 HOH HOH . D 4 HOH A 20 228 227 HOH HOH . D 4 HOH A 21 229 228 HOH HOH . D 4 HOH A 22 230 229 HOH HOH . D 4 HOH A 23 231 230 HOH HOH . D 4 HOH A 24 232 231 HOH HOH . D 4 HOH A 25 233 232 HOH HOH . D 4 HOH A 26 234 233 HOH HOH . D 4 HOH A 27 235 234 HOH HOH . D 4 HOH A 28 236 235 HOH HOH . D 4 HOH A 29 237 236 HOH HOH . D 4 HOH A 30 238 237 HOH HOH . D 4 HOH A 31 239 238 HOH HOH . D 4 HOH A 32 240 239 HOH HOH . D 4 HOH A 33 241 240 HOH HOH . D 4 HOH A 34 242 241 HOH HOH . D 4 HOH A 35 243 242 HOH HOH . D 4 HOH A 36 244 243 HOH HOH . D 4 HOH A 37 245 244 HOH HOH . D 4 HOH A 38 246 245 HOH HOH . D 4 HOH A 39 247 246 HOH HOH . D 4 HOH A 40 248 247 HOH HOH . D 4 HOH A 41 249 248 HOH HOH . D 4 HOH A 42 250 249 HOH HOH . D 4 HOH A 43 251 250 HOH HOH . D 4 HOH A 44 252 251 HOH HOH . D 4 HOH A 45 253 252 HOH HOH . D 4 HOH A 46 254 253 HOH HOH . D 4 HOH A 47 255 254 HOH HOH . D 4 HOH A 48 256 255 HOH HOH . D 4 HOH A 49 257 256 HOH HOH . D 4 HOH A 50 258 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 15.683 9.45 22.917 1 32.05 ? PA NDP 207 A 1 HETATM 2 O O1A NDP . . . B 2 15.766 9.824 21.471 1 32.71 ? O1A NDP 207 A 1 HETATM 3 O O2A NDP . . . B 2 14.436 9.059 23.565 1 33.09 ? O2A NDP 207 A 1 HETATM 4 O O5B NDP . . . B 2 16.302 10.849 23.644 1 33.29 ? O5B NDP 207 A 1 HETATM 5 C C5B NDP . . . B 2 16.074 10.925 25.111 1 32.31 ? C5B NDP 207 A 1 HETATM 6 C C4B NDP . . . B 2 16.312 12.439 25.371 1 32.99 ? C4B NDP 207 A 1 HETATM 7 O O4B NDP . . . B 2 15.309 13.056 24.926 1 33.47 ? O4B NDP 207 A 1 HETATM 8 C C3B NDP . . . B 2 16.242 12.646 26.987 1 32.85 ? C3B NDP 207 A 1 HETATM 9 O O3B NDP . . . B 2 17.711 12.59 27.315 1 32.86 ? O3B NDP 207 A 1 HETATM 10 C C2B NDP . . . B 2 15.699 14.094 26.897 1 32.42 ? C2B NDP 207 A 1 HETATM 11 O O2B NDP . . . B 2 16.567 14.954 26.29 1 31.77 ? O2B NDP 207 A 1 HETATM 12 C C1B NDP . . . B 2 14.55 13.802 25.892 1 32.51 ? C1B NDP 207 A 1 HETATM 13 N N9A NDP . . . B 2 13.479 13.034 26.49 1 32.48 ? N9A NDP 207 A 1 HETATM 14 C C8A NDP . . . B 2 13.124 11.781 26.12 1 32.16 ? C8A NDP 207 A 1 HETATM 15 N N7A NDP . . . B 2 12.136 11.298 26.834 1 31.36 ? N7A NDP 207 A 1 HETATM 16 C C5A NDP . . . B 2 11.906 12.401 27.734 1 31.43 ? C5A NDP 207 A 1 HETATM 17 C C6A NDP . . . B 2 10.893 12.633 28.9 1 32.37 ? C6A NDP 207 A 1 HETATM 18 N N6A NDP . . . B 2 10.027 11.663 29.2 1 32.17 ? N6A NDP 207 A 1 HETATM 19 N N1A NDP . . . B 2 10.941 13.816 29.551 1 30.74 ? N1A NDP 207 A 1 HETATM 20 C C2A NDP . . . B 2 11.882 14.662 29.099 1 30.71 ? C2A NDP 207 A 1 HETATM 21 N N3A NDP . . . B 2 12.787 14.583 28.144 1 30.55 ? N3A NDP 207 A 1 HETATM 22 C C4A NDP . . . B 2 12.717 13.4 27.49 1 31.91 ? C4A NDP 207 A 1 HETATM 23 O O3 NDP . . . B 2 16.945 8.584 23.249 1 32.64 ? O3 NDP 207 A 1 HETATM 24 P PN NDP . . . B 2 17.128 7.282 24.139 1 33.95 ? PN NDP 207 A 1 HETATM 25 O O1N NDP . . . B 2 16.129 7.045 25.111 1 32.44 ? O1N NDP 207 A 1 HETATM 26 O O2N NDP . . . B 2 18.508 7.327 24.621 1 34.65 ? O2N NDP 207 A 1 HETATM 27 O O5D NDP . . . B 2 17.268 6.294 23.082 1 33.57 ? O5D NDP 207 A 1 HETATM 28 C C5D NDP . . . B 2 18.125 6.697 21.986 1 35.31 ? C5D NDP 207 A 1 HETATM 29 C C4D NDP . . . B 2 18.334 5.323 21.351 1 35.93 ? C4D NDP 207 A 1 HETATM 30 O O4D NDP . . . B 2 17.01 4.877 20.828 1 36.07 ? O4D NDP 207 A 1 HETATM 31 C C3D NDP . . . B 2 19.357 5.252 20.18 1 36.47 ? C3D NDP 207 A 1 HETATM 32 O O3D NDP . . . B 2 19.926 3.906 20.151 1 37.53 ? O3D NDP 207 A 1 HETATM 33 C C2D NDP . . . B 2 18.356 5.473 18.994 1 36.34 ? C2D NDP 207 A 1 HETATM 34 O O2D NDP . . . B 2 18.948 5.077 17.816 1 36.63 ? O2D NDP 207 A 1 HETATM 35 C C1D NDP . . . B 2 17.236 4.51 19.435 1 35.31 ? C1D NDP 207 A 1 HETATM 36 N N1N NDP . . . B 2 15.967 4.659 18.58 1 34.13 ? N1N NDP 207 A 1 HETATM 37 C C2N NDP . . . B 2 15.307 3.551 17.97 1 32.65 ? C2N NDP 207 A 1 HETATM 38 C C3N NDP . . . B 2 14.235 3.805 17.212 1 30.79 ? C3N NDP 207 A 1 HETATM 39 C C7N NDP . . . B 2 13.507 2.685 16.543 1 28.44 ? C7N NDP 207 A 1 HETATM 40 O O7N NDP . . . B 2 12.54 3.047 15.894 1 26.01 ? O7N NDP 207 A 1 HETATM 41 N N7N NDP . . . B 2 13.887 1.402 16.649 1 25.66 ? N7N NDP 207 A 1 HETATM 42 C C4N NDP . . . B 2 13.66 5.23 16.96 1 31.98 ? C4N NDP 207 A 1 HETATM 43 C C5N NDP . . . B 2 14.463 6.27 17.678 1 32.72 ? C5N NDP 207 A 1 HETATM 44 C C6N NDP . . . B 2 15.522 5.971 18.407 1 33.59 ? C6N NDP 207 A 1 HETATM 45 P P2B NDP . . . B 2 17.536 15.949 27.318 1 33.63 ? P2B NDP 207 A 1 HETATM 46 O O1X NDP . . . B 2 16.859 15.71 28.658 1 33.33 ? O1X NDP 207 A 1 HETATM 47 O O2X NDP . . . B 2 17.241 17.245 26.742 1 31.94 ? O2X NDP 207 A 1 HETATM 48 O O3X NDP . . . B 2 18.862 15.303 27.296 1 32.75 ? O3X NDP 207 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #