data_1DAK
#
_model_server_result.job_id            QqPjUif6SzVd5S2sPs4yuQ 
_model_server_result.datetime_utc      '2024-12-28 17:51:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":902}' 
#
_entry.id    1DAK 
#
_exptl.entry_id    1DAK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.58 
_cell.angle_gamma         90 
_cell.entry_id            1DAK 
_cell.length_a            72.68 
_cell.length_b            48.19 
_cell.length_c            61.07 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 16 A THR 16 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc2 A OD2 ASP 54 A ASP 54 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc3 A OE2 GLU 115 A GLU 115 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc4 G O HOH . A HOH 429 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc5 G O HOH . A HOH 444 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc6 G O HOH . A HOH 444 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc7 G O HOH . A HOH 559 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc8 G O HOH . A HOH 754 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc9 E O2B DPU . A DPU 801 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc10 E O3B DPU . A DPU 801 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc11 F O3B ADP . A ADP 802 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc12 F O2B ADP . A ADP 802 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DAK 
_atom_sites.fract_transf_matrix[1][1]    0.013759 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004096 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020751 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017085 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 803 803 PO4 PO4 . 
C 3 MG A 1 901 901 MG MG . 
D 3 MG A 1 902 902 MG MG . 
E 4 DPU A 1 801 801 DPU DPP . 
F 5 ADP A 1 802 802 ADP ADP . 
G 6 HOH A 1 301 301 HOH HOH . 
G 6 HOH A 2 302 302 HOH HOH . 
G 6 HOH A 3 304 304 HOH HOH . 
G 6 HOH A 4 306 306 HOH HOH . 
G 6 HOH A 5 307 307 HOH HOH . 
G 6 HOH A 6 308 308 HOH HOH . 
G 6 HOH A 7 309 309 HOH HOH . 
G 6 HOH A 8 310 310 HOH HOH . 
G 6 HOH A 9 311 311 HOH HOH . 
G 6 HOH A 10 314 314 HOH HOH . 
G 6 HOH A 11 315 315 HOH HOH . 
G 6 HOH A 12 316 316 HOH HOH . 
G 6 HOH A 13 317 317 HOH HOH . 
G 6 HOH A 14 321 321 HOH HOH . 
G 6 HOH A 15 322 322 HOH HOH . 
G 6 HOH A 16 323 323 HOH HOH . 
G 6 HOH A 17 325 325 HOH HOH . 
G 6 HOH A 18 326 326 HOH HOH . 
G 6 HOH A 19 327 327 HOH HOH . 
G 6 HOH A 20 329 329 HOH HOH . 
G 6 HOH A 21 330 330 HOH HOH . 
G 6 HOH A 22 331 331 HOH HOH . 
G 6 HOH A 23 332 332 HOH HOH . 
G 6 HOH A 24 338 338 HOH HOH . 
G 6 HOH A 25 339 339 HOH HOH . 
G 6 HOH A 26 343 343 HOH HOH . 
G 6 HOH A 27 344 344 HOH HOH . 
G 6 HOH A 28 345 345 HOH HOH . 
G 6 HOH A 29 348 348 HOH HOH . 
G 6 HOH A 30 349 349 HOH HOH . 
G 6 HOH A 31 350 350 HOH HOH . 
G 6 HOH A 32 353 353 HOH HOH . 
G 6 HOH A 33 356 356 HOH HOH . 
G 6 HOH A 34 357 357 HOH HOH . 
G 6 HOH A 35 358 358 HOH HOH . 
G 6 HOH A 36 359 359 HOH HOH . 
G 6 HOH A 37 360 360 HOH HOH . 
G 6 HOH A 38 361 361 HOH HOH . 
G 6 HOH A 39 362 362 HOH HOH . 
G 6 HOH A 40 363 363 HOH HOH . 
G 6 HOH A 41 366 366 HOH HOH . 
G 6 HOH A 42 367 367 HOH HOH . 
G 6 HOH A 43 368 368 HOH HOH . 
G 6 HOH A 44 369 369 HOH HOH . 
G 6 HOH A 45 370 370 HOH HOH . 
G 6 HOH A 46 371 371 HOH HOH . 
G 6 HOH A 47 372 372 HOH HOH . 
G 6 HOH A 48 373 373 HOH HOH . 
G 6 HOH A 49 376 376 HOH HOH . 
G 6 HOH A 50 379 379 HOH HOH . 
G 6 HOH A 51 380 380 HOH HOH . 
G 6 HOH A 52 381 381 HOH HOH . 
G 6 HOH A 53 383 383 HOH HOH . 
G 6 HOH A 54 385 385 HOH HOH . 
G 6 HOH A 55 386 386 HOH HOH . 
G 6 HOH A 56 388 388 HOH HOH . 
G 6 HOH A 57 393 393 HOH HOH . 
G 6 HOH A 58 395 395 HOH HOH . 
G 6 HOH A 59 396 396 HOH HOH . 
G 6 HOH A 60 398 398 HOH HOH . 
G 6 HOH A 61 400 400 HOH HOH . 
G 6 HOH A 62 402 402 HOH HOH . 
G 6 HOH A 63 404 404 HOH HOH . 
G 6 HOH A 64 406 406 HOH HOH . 
G 6 HOH A 65 412 412 HOH HOH . 
G 6 HOH A 66 416 416 HOH HOH . 
G 6 HOH A 67 417 417 HOH HOH . 
G 6 HOH A 68 421 421 HOH HOH . 
G 6 HOH A 69 423 423 HOH HOH . 
G 6 HOH A 70 425 425 HOH HOH . 
G 6 HOH A 71 426 426 HOH HOH . 
G 6 HOH A 72 427 427 HOH HOH . 
G 6 HOH A 73 429 429 HOH HOH . 
G 6 HOH A 74 430 430 HOH HOH . 
G 6 HOH A 75 432 432 HOH HOH . 
G 6 HOH A 76 433 433 HOH HOH . 
G 6 HOH A 77 434 434 HOH HOH . 
G 6 HOH A 78 438 438 HOH HOH . 
G 6 HOH A 79 440 440 HOH HOH . 
G 6 HOH A 80 441 441 HOH HOH . 
G 6 HOH A 81 444 444 HOH HOH . 
G 6 HOH A 82 446 446 HOH HOH . 
G 6 HOH A 83 447 447 HOH HOH . 
G 6 HOH A 84 457 457 HOH HOH . 
G 6 HOH A 85 460 460 HOH HOH . 
G 6 HOH A 86 463 463 HOH HOH . 
G 6 HOH A 87 466 466 HOH HOH . 
G 6 HOH A 88 472 472 HOH HOH . 
G 6 HOH A 89 474 474 HOH HOH . 
G 6 HOH A 90 477 477 HOH HOH . 
G 6 HOH A 91 481 481 HOH HOH . 
G 6 HOH A 92 492 492 HOH HOH . 
G 6 HOH A 93 493 493 HOH HOH . 
G 6 HOH A 94 496 496 HOH HOH . 
G 6 HOH A 95 499 499 HOH HOH . 
G 6 HOH A 96 500 500 HOH HOH . 
G 6 HOH A 97 504 504 HOH HOH . 
G 6 HOH A 98 505 505 HOH HOH . 
G 6 HOH A 99 506 506 HOH HOH . 
G 6 HOH A 100 507 507 HOH HOH . 
G 6 HOH A 101 511 511 HOH HOH . 
G 6 HOH A 102 513 513 HOH HOH . 
G 6 HOH A 103 514 514 HOH HOH . 
G 6 HOH A 104 516 516 HOH HOH . 
G 6 HOH A 105 518 518 HOH HOH . 
G 6 HOH A 106 521 521 HOH HOH . 
G 6 HOH A 107 522 522 HOH HOH . 
G 6 HOH A 108 523 523 HOH HOH . 
G 6 HOH A 109 524 524 HOH HOH . 
G 6 HOH A 110 526 526 HOH HOH . 
G 6 HOH A 111 530 530 HOH HOH . 
G 6 HOH A 112 531 531 HOH HOH . 
G 6 HOH A 113 532 532 HOH HOH . 
G 6 HOH A 114 533 533 HOH HOH . 
G 6 HOH A 115 535 535 HOH HOH . 
G 6 HOH A 116 536 536 HOH HOH . 
G 6 HOH A 117 538 538 HOH HOH . 
G 6 HOH A 118 543 543 HOH HOH . 
G 6 HOH A 119 544 544 HOH HOH . 
G 6 HOH A 120 546 546 HOH HOH . 
G 6 HOH A 121 547 547 HOH HOH . 
G 6 HOH A 122 551 551 HOH HOH . 
G 6 HOH A 123 559 559 HOH HOH . 
G 6 HOH A 124 560 560 HOH HOH . 
G 6 HOH A 125 561 561 HOH HOH . 
G 6 HOH A 126 569 569 HOH HOH . 
G 6 HOH A 127 580 580 HOH HOH . 
G 6 HOH A 128 586 586 HOH HOH . 
G 6 HOH A 129 587 587 HOH HOH . 
G 6 HOH A 130 589 589 HOH HOH . 
G 6 HOH A 131 590 590 HOH HOH . 
G 6 HOH A 132 595 595 HOH HOH . 
G 6 HOH A 133 596 596 HOH HOH . 
G 6 HOH A 134 597 597 HOH HOH . 
G 6 HOH A 135 598 598 HOH HOH . 
G 6 HOH A 136 600 600 HOH HOH . 
G 6 HOH A 137 602 602 HOH HOH . 
G 6 HOH A 138 604 604 HOH HOH . 
G 6 HOH A 139 607 607 HOH HOH . 
G 6 HOH A 140 610 610 HOH HOH . 
G 6 HOH A 141 611 611 HOH HOH . 
G 6 HOH A 142 612 612 HOH HOH . 
G 6 HOH A 143 614 614 HOH HOH . 
G 6 HOH A 144 615 615 HOH HOH . 
G 6 HOH A 145 616 616 HOH HOH . 
G 6 HOH A 146 622 622 HOH HOH . 
G 6 HOH A 147 624 624 HOH HOH . 
G 6 HOH A 148 652 652 HOH HOH . 
G 6 HOH A 149 653 653 HOH HOH . 
G 6 HOH A 150 655 655 HOH HOH . 
G 6 HOH A 151 656 656 HOH HOH . 
G 6 HOH A 152 663 663 HOH HOH . 
G 6 HOH A 153 664 664 HOH HOH . 
G 6 HOH A 154 666 666 HOH HOH . 
G 6 HOH A 155 676 676 HOH HOH . 
G 6 HOH A 156 679 679 HOH HOH . 
G 6 HOH A 157 684 684 HOH HOH . 
G 6 HOH A 158 685 685 HOH HOH . 
G 6 HOH A 159 693 693 HOH HOH . 
G 6 HOH A 160 694 694 HOH HOH . 
G 6 HOH A 161 700 700 HOH HOH . 
G 6 HOH A 162 703 703 HOH HOH . 
G 6 HOH A 163 704 704 HOH HOH . 
G 6 HOH A 164 706 706 HOH HOH . 
G 6 HOH A 165 707 707 HOH HOH . 
G 6 HOH A 166 709 709 HOH HOH . 
G 6 HOH A 167 710 710 HOH HOH . 
G 6 HOH A 168 711 711 HOH HOH . 
G 6 HOH A 169 712 712 HOH HOH . 
G 6 HOH A 170 713 713 HOH HOH . 
G 6 HOH A 171 714 714 HOH HOH . 
G 6 HOH A 172 717 717 HOH HOH . 
G 6 HOH A 173 719 719 HOH HOH . 
G 6 HOH A 174 720 720 HOH HOH . 
G 6 HOH A 175 722 722 HOH HOH . 
G 6 HOH A 176 723 723 HOH HOH . 
G 6 HOH A 177 724 724 HOH HOH . 
G 6 HOH A 178 729 729 HOH HOH . 
G 6 HOH A 179 731 731 HOH HOH . 
G 6 HOH A 180 734 734 HOH HOH . 
G 6 HOH A 181 736 736 HOH HOH . 
G 6 HOH A 182 737 737 HOH HOH . 
G 6 HOH A 183 742 742 HOH HOH . 
G 6 HOH A 184 745 745 HOH HOH . 
G 6 HOH A 185 746 746 HOH HOH . 
G 6 HOH A 186 748 748 HOH HOH . 
G 6 HOH A 187 751 751 HOH HOH . 
G 6 HOH A 188 754 754 HOH HOH . 
G 6 HOH A 189 755 755 HOH HOH . 
G 6 HOH A 190 756 756 HOH HOH . 
G 6 HOH A 191 757 757 HOH HOH . 
G 6 HOH A 192 758 758 HOH HOH . 
G 6 HOH A 193 759 759 HOH HOH . 
G 6 HOH A 194 760 760 HOH HOH . 
G 6 HOH A 195 761 761 HOH HOH . 
G 6 HOH A 196 762 762 HOH HOH . 
G 6 HOH A 197 763 763 HOH HOH . 
G 6 HOH A 198 764 764 HOH HOH . 
G 6 HOH A 199 767 767 HOH HOH . 
G 6 HOH A 200 768 768 HOH HOH . 
G 6 HOH A 201 769 769 HOH HOH . 
G 6 HOH A 202 773 773 HOH HOH . 
G 6 HOH A 203 775 775 HOH HOH . 
G 6 HOH A 204 778 778 HOH HOH . 
G 6 HOH A 205 779 779 HOH HOH . 
G 6 HOH A 206 780 780 HOH HOH . 
G 6 HOH A 207 781 781 HOH HOH . 
G 6 HOH A 208 783 783 HOH HOH . 
G 6 HOH A 209 784 784 HOH HOH . 
G 6 HOH A 210 788 788 HOH HOH . 
G 6 HOH A 211 789 789 HOH HOH . 
G 6 HOH A 212 790 790 HOH HOH . 
G 6 HOH A 213 791 791 HOH HOH . 
G 6 HOH A 214 792 792 HOH HOH . 
G 6 HOH A 215 793 793 HOH HOH . 
G 6 HOH A 216 794 794 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               1.304 
_atom_site.Cartn_y               21.531 
_atom_site.Cartn_z               12.252 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           902 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#