data_1DAM # _model_server_result.job_id ieVjX80GpEThMY0SK9-HFg _model_server_result.datetime_utc '2024-11-18 07:25:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 1DAM # _exptl.entry_id 1DAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.7 _cell.angle_gamma 90 _cell.entry_id 1DAM _cell.length_a 72.7 _cell.length_b 48.9 _cell.length_c 61.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 16 A THR 16 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A OD2 ASP 54 A ASP 54 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 A OE2 GLU 115 A GLU 115 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 G O HOH . A HOH 444 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc5 G O HOH . A HOH 444 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 G O HOH . A HOH 448 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc7 G O HOH . A HOH 749 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc8 G O HOH . A HOH 750 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 E O2B ADP . A ADP 801 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc10 E O3B ADP . A ADP 801 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc11 D O2 PO4 . A PO4 802 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc12 D O3 PO4 . A PO4 802 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 337 n n P O2 PO4 sing 338 n n P O3 PO4 sing 339 n n P O4 PO4 sing 340 n n # _atom_sites.entry_id 1DAM _atom_sites.fract_transf_matrix[1][1] 0.013755 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004127 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 901 901 MG IUM . C 2 MG A 1 902 902 MG IUM . D 3 PO4 A 1 802 802 PO4 PHO . E 4 ADP A 1 801 801 ADP ADP . F 5 DTB A 1 803 803 DTB CYC . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 302 HOH HOH . G 6 HOH A 3 304 304 HOH HOH . G 6 HOH A 4 306 306 HOH HOH . G 6 HOH A 5 307 307 HOH HOH . G 6 HOH A 6 308 308 HOH HOH . G 6 HOH A 7 309 309 HOH HOH . G 6 HOH A 8 310 310 HOH HOH . G 6 HOH A 9 311 311 HOH HOH . G 6 HOH A 10 314 314 HOH HOH . G 6 HOH A 11 315 315 HOH HOH . G 6 HOH A 12 316 316 HOH HOH . G 6 HOH A 13 317 317 HOH HOH . G 6 HOH A 14 321 321 HOH HOH . G 6 HOH A 15 322 322 HOH HOH . G 6 HOH A 16 323 323 HOH HOH . G 6 HOH A 17 325 325 HOH HOH . G 6 HOH A 18 326 326 HOH HOH . G 6 HOH A 19 327 327 HOH HOH . G 6 HOH A 20 329 329 HOH HOH . G 6 HOH A 21 330 330 HOH HOH . G 6 HOH A 22 331 331 HOH HOH . G 6 HOH A 23 332 332 HOH HOH . G 6 HOH A 24 338 338 HOH HOH . G 6 HOH A 25 339 339 HOH HOH . G 6 HOH A 26 343 343 HOH HOH . G 6 HOH A 27 344 344 HOH HOH . G 6 HOH A 28 345 345 HOH HOH . G 6 HOH A 29 348 348 HOH HOH . G 6 HOH A 30 349 349 HOH HOH . G 6 HOH A 31 350 350 HOH HOH . G 6 HOH A 32 353 353 HOH HOH . G 6 HOH A 33 356 356 HOH HOH . G 6 HOH A 34 357 357 HOH HOH . G 6 HOH A 35 358 358 HOH HOH . G 6 HOH A 36 359 359 HOH HOH . G 6 HOH A 37 360 360 HOH HOH . G 6 HOH A 38 361 361 HOH HOH . G 6 HOH A 39 362 362 HOH HOH . G 6 HOH A 40 363 363 HOH HOH . G 6 HOH A 41 366 366 HOH HOH . G 6 HOH A 42 367 367 HOH HOH . G 6 HOH A 43 368 368 HOH HOH . G 6 HOH A 44 369 369 HOH HOH . G 6 HOH A 45 370 370 HOH HOH . G 6 HOH A 46 371 371 HOH HOH . G 6 HOH A 47 372 372 HOH HOH . G 6 HOH A 48 373 373 HOH HOH . G 6 HOH A 49 376 376 HOH HOH . G 6 HOH A 50 379 379 HOH HOH . G 6 HOH A 51 380 380 HOH HOH . G 6 HOH A 52 381 381 HOH HOH . G 6 HOH A 53 383 383 HOH HOH . G 6 HOH A 54 385 385 HOH HOH . G 6 HOH A 55 386 386 HOH HOH . G 6 HOH A 56 388 388 HOH HOH . G 6 HOH A 57 390 390 HOH HOH . G 6 HOH A 58 393 393 HOH HOH . G 6 HOH A 59 396 396 HOH HOH . G 6 HOH A 60 398 398 HOH HOH . G 6 HOH A 61 400 400 HOH HOH . G 6 HOH A 62 402 402 HOH HOH . G 6 HOH A 63 404 404 HOH HOH . G 6 HOH A 64 406 406 HOH HOH . G 6 HOH A 65 407 407 HOH HOH . G 6 HOH A 66 412 412 HOH HOH . G 6 HOH A 67 416 416 HOH HOH . G 6 HOH A 68 421 421 HOH HOH . G 6 HOH A 69 423 423 HOH HOH . G 6 HOH A 70 425 425 HOH HOH . G 6 HOH A 71 426 426 HOH HOH . G 6 HOH A 72 427 427 HOH HOH . G 6 HOH A 73 430 430 HOH HOH . G 6 HOH A 74 432 432 HOH HOH . G 6 HOH A 75 433 433 HOH HOH . G 6 HOH A 76 434 434 HOH HOH . G 6 HOH A 77 436 436 HOH HOH . G 6 HOH A 78 438 438 HOH HOH . G 6 HOH A 79 440 440 HOH HOH . G 6 HOH A 80 441 441 HOH HOH . G 6 HOH A 81 444 444 HOH HOH . G 6 HOH A 82 446 446 HOH HOH . G 6 HOH A 83 447 447 HOH HOH . G 6 HOH A 84 448 448 HOH HOH . G 6 HOH A 85 449 449 HOH HOH . G 6 HOH A 86 457 457 HOH HOH . G 6 HOH A 87 460 460 HOH HOH . G 6 HOH A 88 463 463 HOH HOH . G 6 HOH A 89 466 466 HOH HOH . G 6 HOH A 90 470 470 HOH HOH . G 6 HOH A 91 474 474 HOH HOH . G 6 HOH A 92 477 477 HOH HOH . G 6 HOH A 93 481 481 HOH HOH . G 6 HOH A 94 486 486 HOH HOH . G 6 HOH A 95 492 492 HOH HOH . G 6 HOH A 96 493 493 HOH HOH . G 6 HOH A 97 498 498 HOH HOH . G 6 HOH A 98 499 499 HOH HOH . G 6 HOH A 99 500 500 HOH HOH . G 6 HOH A 100 504 504 HOH HOH . G 6 HOH A 101 505 505 HOH HOH . G 6 HOH A 102 506 506 HOH HOH . G 6 HOH A 103 507 507 HOH HOH . G 6 HOH A 104 512 512 HOH HOH . G 6 HOH A 105 513 513 HOH HOH . G 6 HOH A 106 514 514 HOH HOH . G 6 HOH A 107 516 516 HOH HOH . G 6 HOH A 108 518 518 HOH HOH . G 6 HOH A 109 521 521 HOH HOH . G 6 HOH A 110 522 522 HOH HOH . G 6 HOH A 111 523 523 HOH HOH . G 6 HOH A 112 524 524 HOH HOH . G 6 HOH A 113 526 526 HOH HOH . G 6 HOH A 114 530 530 HOH HOH . G 6 HOH A 115 531 531 HOH HOH . G 6 HOH A 116 532 532 HOH HOH . G 6 HOH A 117 533 533 HOH HOH . G 6 HOH A 118 535 535 HOH HOH . G 6 HOH A 119 536 536 HOH HOH . G 6 HOH A 120 538 538 HOH HOH . G 6 HOH A 121 543 543 HOH HOH . G 6 HOH A 122 544 544 HOH HOH . G 6 HOH A 123 546 546 HOH HOH . G 6 HOH A 124 547 547 HOH HOH . G 6 HOH A 125 548 548 HOH HOH . G 6 HOH A 126 551 551 HOH HOH . G 6 HOH A 127 560 560 HOH HOH . G 6 HOH A 128 561 561 HOH HOH . G 6 HOH A 129 569 569 HOH HOH . G 6 HOH A 130 571 571 HOH HOH . G 6 HOH A 131 574 574 HOH HOH . G 6 HOH A 132 580 580 HOH HOH . G 6 HOH A 133 586 586 HOH HOH . G 6 HOH A 134 587 587 HOH HOH . G 6 HOH A 135 589 589 HOH HOH . G 6 HOH A 136 590 590 HOH HOH . G 6 HOH A 137 595 595 HOH HOH . G 6 HOH A 138 596 596 HOH HOH . G 6 HOH A 139 597 597 HOH HOH . G 6 HOH A 140 598 598 HOH HOH . G 6 HOH A 141 600 600 HOH HOH . G 6 HOH A 142 602 602 HOH HOH . G 6 HOH A 143 607 607 HOH HOH . G 6 HOH A 144 610 610 HOH HOH . G 6 HOH A 145 611 611 HOH HOH . G 6 HOH A 146 612 612 HOH HOH . G 6 HOH A 147 614 614 HOH HOH . G 6 HOH A 148 615 615 HOH HOH . G 6 HOH A 149 616 616 HOH HOH . G 6 HOH A 150 622 622 HOH HOH . G 6 HOH A 151 624 624 HOH HOH . G 6 HOH A 152 626 626 HOH HOH . G 6 HOH A 153 652 652 HOH HOH . G 6 HOH A 154 653 653 HOH HOH . G 6 HOH A 155 655 655 HOH HOH . G 6 HOH A 156 656 656 HOH HOH . G 6 HOH A 157 661 661 HOH HOH . G 6 HOH A 158 663 663 HOH HOH . G 6 HOH A 159 664 664 HOH HOH . G 6 HOH A 160 671 671 HOH HOH . G 6 HOH A 161 675 675 HOH HOH . G 6 HOH A 162 676 676 HOH HOH . G 6 HOH A 163 679 679 HOH HOH . G 6 HOH A 164 684 684 HOH HOH . G 6 HOH A 165 685 685 HOH HOH . G 6 HOH A 166 688 688 HOH HOH . G 6 HOH A 167 689 689 HOH HOH . G 6 HOH A 168 691 691 HOH HOH . G 6 HOH A 169 693 693 HOH HOH . G 6 HOH A 170 694 694 HOH HOH . G 6 HOH A 171 700 700 HOH HOH . G 6 HOH A 172 703 703 HOH HOH . G 6 HOH A 173 704 704 HOH HOH . G 6 HOH A 174 706 706 HOH HOH . G 6 HOH A 175 707 707 HOH HOH . G 6 HOH A 176 708 708 HOH HOH . G 6 HOH A 177 709 709 HOH HOH . G 6 HOH A 178 714 714 HOH HOH . G 6 HOH A 179 717 717 HOH HOH . G 6 HOH A 180 718 718 HOH HOH . G 6 HOH A 181 719 719 HOH HOH . G 6 HOH A 182 749 749 HOH HOH . G 6 HOH A 183 750 750 HOH HOH . G 6 HOH A 184 751 751 HOH HOH . G 6 HOH A 185 752 752 HOH HOH . G 6 HOH A 186 753 753 HOH HOH . G 6 HOH A 187 754 754 HOH HOH . G 6 HOH A 188 755 755 HOH HOH . G 6 HOH A 189 756 756 HOH HOH . G 6 HOH A 190 757 757 HOH HOH . G 6 HOH A 191 758 758 HOH HOH . G 6 HOH A 192 759 759 HOH HOH . G 6 HOH A 193 760 760 HOH HOH . G 6 HOH A 194 762 762 HOH HOH . G 6 HOH A 195 763 763 HOH HOH . G 6 HOH A 196 764 764 HOH HOH . G 6 HOH A 197 765 765 HOH HOH . G 6 HOH A 198 766 766 HOH HOH . G 6 HOH A 199 767 767 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 0.207 24.583 13.067 1 18.45 ? P PO4 802 A 1 HETATM 2 O O1 PO4 . . . D 3 -0.663 25.23 14.078 1 16.95 ? O1 PO4 802 A 1 HETATM 3 O O2 PO4 . . . D 3 1.731 24.753 13.527 1 15.69 ? O2 PO4 802 A 1 HETATM 4 O O3 PO4 . . . D 3 -0.039 23.079 12.979 1 17.28 ? O3 PO4 802 A 1 HETATM 5 O O4 PO4 . . . D 3 0.043 25.201 11.509 1 17.12 ? O4 PO4 802 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #