data_1DAO # _model_server_result.job_id Sud3DHuasT9ESilm8OoD_Q _model_server_result.datetime_utc '2024-11-23 22:38:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":348}' # _entry.id 1DAO # _exptl.entry_id 1DAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 855.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE-N5-ISOBUTYL KETONE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DAO _cell.length_a 326.4 _cell.length_b 136.9 _cell.length_c 196.5 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA tetrameric 4 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M,Q,U 1 1 B,F,J,N,R,V 2 1 C,G,K,O,S,W 3 1 D,H,L,P,T,X 4 1 C,D,G,H,K,L,O,P,S,T,W,X 5 1 A,B,E,F,I,J,M,N,Q,R,U,V 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C31 H39 N9 O16 P2' _chem_comp.formula_weight 855.64 _chem_comp.id FAB _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE-N5-ISOBUTYL KETONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAB doub 83 n n PA O2A FAB sing 84 n n PA O5B FAB sing 85 n n PA O3P FAB sing 86 n n O2A HOA2 FAB sing 87 n n O5B C5B FAB sing 88 n n C5B C4B FAB sing 89 n n C5B H51A FAB sing 90 n n C5B H52A FAB sing 91 n n C4B O4B FAB sing 92 n n C4B C3B FAB sing 93 n n C4B H4B FAB sing 94 n n O4B C1B FAB sing 95 n n C3B O3B FAB sing 96 n n C3B C2B FAB sing 97 n n C3B H3B FAB sing 98 n n O3B HO3A FAB sing 99 n n C2B O2B FAB sing 100 n n C2B C1B FAB sing 101 n n C2B H2B FAB sing 102 n n O2B HO2A FAB sing 103 n n C1B N9A FAB sing 104 n n C1B H1B FAB sing 105 n n N9A C8A FAB sing 106 n y N9A C4A FAB sing 107 n y C8A N7A FAB doub 108 n y C8A H8A FAB sing 109 n n N7A C5A FAB sing 110 n y C5A C6A FAB sing 111 n y C5A C4A FAB doub 112 n y C6A N6A FAB sing 113 n n C6A N1A FAB doub 114 n y N6A H61A FAB sing 115 n n N6A H62A FAB sing 116 n n N1A C2A FAB sing 117 n y C2A N3A FAB doub 118 n y C2A H2A FAB sing 119 n n N3A C4A FAB sing 120 n y N1 C2 FAB sing 121 n n N1 C10 FAB doub 122 n n C2 O2 FAB doub 123 n n C2 N3 FAB sing 124 n n N3 C4 FAB sing 125 n n N3 HN3 FAB sing 126 n n C4 O4 FAB doub 127 n n C4 C4X FAB sing 128 n n C4X N5 FAB doub 129 n n C4X C10 FAB sing 130 n n N5 C5X FAB sing 131 n n N5 C2' FAB sing 132 n n C5X C6 FAB doub 133 n y C5X C9A FAB sing 134 n y C6 C7 FAB sing 135 n y C6 H6 FAB sing 136 n n C7 C7M FAB sing 137 n n C7 C8 FAB doub 138 n y C7M HM71 FAB sing 139 n n C7M HM72 FAB sing 140 n n C7M HM73 FAB sing 141 n n C8 C8M FAB sing 142 n n C8 C9 FAB sing 143 n y C8M HM81 FAB sing 144 n n C8M HM82 FAB sing 145 n n C8M HM83 FAB sing 146 n n C9 C9A FAB doub 147 n y C9 H9 FAB sing 148 n n C9A N10 FAB sing 149 n n N10 C10 FAB sing 150 n n N10 C1' FAB sing 151 n n C1' C2D FAB sing 152 n n C1' "H1'1" FAB sing 153 n n C1' "H1'2" FAB sing 154 n n C2D O2' FAB sing 155 n n C2D C3D FAB sing 156 n n C2D H2' FAB sing 157 n n O2' HO2' FAB sing 158 n n C3D O3D FAB sing 159 n n C3D C4D FAB sing 160 n n C3D H3D FAB sing 161 n n O3D HO3' FAB sing 162 n n C4D O4' FAB sing 163 n n C4D C5D FAB sing 164 n n C4D H4' FAB sing 165 n n O4' HO4' FAB sing 166 n n C5D O5' FAB sing 167 n n C5D "H5'1" FAB sing 168 n n C5D "H5'2" FAB sing 169 n n O5' P FAB sing 170 n n P O1P FAB doub 171 n n P O2P FAB sing 172 n n P O3P FAB sing 173 n n C2' O3' FAB doub 174 n n C2' C3' FAB sing 175 n n C3' C4' FAB sing 176 n n C3' C5' FAB sing 177 n n C3' H3' FAB sing 178 n n C4' "H4'1" FAB sing 179 n n C4' "H4'2" FAB sing 180 n n C4' "H4'3" FAB sing 181 n n C5' H51X FAB sing 182 n n C5' H52X FAB sing 183 n n C5' "H5'3" FAB sing 184 n n # _atom_sites.entry_id 1DAO _atom_sites.fract_transf_matrix[1][1] 0.003064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FAB A 1 348 340 FAB FAB . J 2 FAB B 1 348 340 FAB FAB . K 2 FAB C 1 348 340 FAB FAB . L 2 FAB D 1 348 340 FAB FAB . M 2 FAB E 1 348 340 FAB FAB . N 2 FAB F 1 348 340 FAB FAB . O 2 FAB G 1 348 340 FAB FAB . P 2 FAB H 1 348 340 FAB FAB . Q 3 HOH A 1 349 1 HOH HOH . R 3 HOH B 1 349 2 HOH HOH . S 3 HOH C 1 349 3 HOH HOH . T 3 HOH D 1 349 4 HOH HOH . U 3 HOH E 1 349 5 HOH HOH . V 3 HOH F 1 349 6 HOH HOH . W 3 HOH G 1 349 7 HOH HOH . X 3 HOH H 1 349 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAB . . . I 2 67.887 1.232 60.337 1 9.08 ? PA FAB 348 A 1 HETATM 2 O O1A FAB . . . I 2 67.973 2.708 60.131 1 10.09 ? O1A FAB 348 A 1 HETATM 3 O O2A FAB . . . I 2 69.097 0.437 60.012 1 9.16 ? O2A FAB 348 A 1 HETATM 4 O O5B FAB . . . I 2 67.533 0.928 61.865 1 7.89 ? O5B FAB 348 A 1 HETATM 5 C C5B FAB . . . I 2 67.992 -0.324 62.29 1 9.16 ? C5B FAB 348 A 1 HETATM 6 C C4B FAB . . . I 2 68.266 -0.19 63.77 1 12.35 ? C4B FAB 348 A 1 HETATM 7 O O4B FAB . . . I 2 68.158 -1.425 64.511 1 14.89 ? O4B FAB 348 A 1 HETATM 8 C C3B FAB . . . I 2 69.634 0.347 64.155 1 13.19 ? C3B FAB 348 A 1 HETATM 9 O O3B FAB . . . I 2 69.482 0.954 65.425 1 13.88 ? O3B FAB 348 A 1 HETATM 10 C C2B FAB . . . I 2 70.46 -0.904 64.405 1 13.81 ? C2B FAB 348 A 1 HETATM 11 O O2B FAB . . . I 2 71.415 -0.536 65.373 1 14.17 ? O2B FAB 348 A 1 HETATM 12 C C1B FAB . . . I 2 69.382 -1.637 65.186 1 15.43 ? C1B FAB 348 A 1 HETATM 13 N N9A FAB . . . I 2 69.574 -3.06 65.429 1 18.08 ? N9A FAB 348 A 1 HETATM 14 C C8A FAB . . . I 2 69.339 -4.109 64.588 1 19.94 ? C8A FAB 348 A 1 HETATM 15 N N7A FAB . . . I 2 69.565 -5.273 65.152 1 21.65 ? N7A FAB 348 A 1 HETATM 16 C C5A FAB . . . I 2 69.926 -4.944 66.45 1 22.14 ? C5A FAB 348 A 1 HETATM 17 C C6A FAB . . . I 2 70.312 -5.708 67.567 1 22.83 ? C6A FAB 348 A 1 HETATM 18 N N6A FAB . . . I 2 70.364 -7.04 67.519 1 24.96 ? N6A FAB 348 A 1 HETATM 19 N N1A FAB . . . I 2 70.651 -5.106 68.723 1 19.32 ? N1A FAB 348 A 1 HETATM 20 C C2A FAB . . . I 2 70.578 -3.774 68.732 1 21.08 ? C2A FAB 348 A 1 HETATM 21 N N3A FAB . . . I 2 70.257 -2.924 67.758 1 21.98 ? N3A FAB 348 A 1 HETATM 22 C C4A FAB . . . I 2 69.938 -3.586 66.638 1 21.55 ? C4A FAB 348 A 1 HETATM 23 N N1 FAB . . . I 2 63.481 5.501 52.049 1 5.27 ? N1 FAB 348 A 1 HETATM 24 C C2 FAB . . . I 2 62.684 6.601 51.933 1 4.89 ? C2 FAB 348 A 1 HETATM 25 O O2 FAB . . . I 2 61.578 6.642 52.477 1 4.43 ? O2 FAB 348 A 1 HETATM 26 N N3 FAB . . . I 2 63.214 7.628 51.148 1 4.73 ? N3 FAB 348 A 1 HETATM 27 C C4 FAB . . . I 2 64.465 7.654 50.541 1 3.36 ? C4 FAB 348 A 1 HETATM 28 O O4 FAB . . . I 2 64.957 8.564 49.879 1 2.97 ? O4 FAB 348 A 1 HETATM 29 C C4X FAB . . . I 2 65.198 6.472 50.71 1 3.19 ? C4X FAB 348 A 1 HETATM 30 N N5 FAB . . . I 2 66.135 6.205 49.702 1 4.92 ? N5 FAB 348 A 1 HETATM 31 C C5X FAB . . . I 2 67.182 5.416 50.239 1 4 ? C5X FAB 348 A 1 HETATM 32 C C6 FAB . . . I 2 68.464 5.444 49.707 1 2.28 ? C6 FAB 348 A 1 HETATM 33 C C7 FAB . . . I 2 69.408 4.624 50.326 1 1.59 ? C7 FAB 348 A 1 HETATM 34 C C7M FAB . . . I 2 70.879 4.54 50.034 1 1.13 ? C7M FAB 348 A 1 HETATM 35 C C8 FAB . . . I 2 69.071 3.737 51.364 1 2.49 ? C8 FAB 348 A 1 HETATM 36 C C8M FAB . . . I 2 70.187 2.908 51.922 1 4.62 ? C8M FAB 348 A 1 HETATM 37 C C9 FAB . . . I 2 67.771 3.717 51.84 1 1 ? C9 FAB 348 A 1 HETATM 38 C C9A FAB . . . I 2 66.854 4.579 51.287 1 1.24 ? C9A FAB 348 A 1 HETATM 39 N N10 FAB . . . I 2 65.603 4.544 51.847 1 3.8 ? N10 FAB 348 A 1 HETATM 40 C C10 FAB . . . I 2 64.696 5.468 51.455 1 4.52 ? C10 FAB 348 A 1 HETATM 41 C C1' FAB . . . I 2 65.162 3.338 52.582 1 3.83 ? C1' FAB 348 A 1 HETATM 42 C C2D FAB . . . I 2 65.257 3.612 54.08 1 3.38 ? C2D FAB 348 A 1 HETATM 43 O O2' FAB . . . I 2 66.593 4.047 54.286 1 2.9 ? O2' FAB 348 A 1 HETATM 44 C C3D FAB . . . I 2 65.027 2.403 54.983 1 4.11 ? C3D FAB 348 A 1 HETATM 45 O O3D FAB . . . I 2 63.738 1.925 54.612 1 6.52 ? O3D FAB 348 A 1 HETATM 46 C C4D FAB . . . I 2 64.961 2.831 56.447 1 3.88 ? C4D FAB 348 A 1 HETATM 47 O O4' FAB . . . I 2 66.176 3.488 56.762 1 5.08 ? O4' FAB 348 A 1 HETATM 48 C C5D FAB . . . I 2 64.796 1.676 57.432 1 4.17 ? C5D FAB 348 A 1 HETATM 49 O O5' FAB . . . I 2 64.901 2.121 58.783 1 6.54 ? O5' FAB 348 A 1 HETATM 50 P P FAB . . . I 2 65.026 1.127 60.051 1 8.86 ? P FAB 348 A 1 HETATM 51 O O1P FAB . . . I 2 64.891 1.831 61.368 1 9.51 ? O1P FAB 348 A 1 HETATM 52 O O2P FAB . . . I 2 64.112 -0.02 59.771 1 10.83 ? O2P FAB 348 A 1 HETATM 53 O O3P FAB . . . I 2 66.533 0.617 59.683 1 7.52 ? O3P FAB 348 A 1 HETATM 54 C C2' FAB . . . I 2 65.909 5.947 48.354 1 5.42 ? C2' FAB 348 A 1 HETATM 55 O O3' FAB . . . I 2 66.129 4.784 47.978 1 4.89 ? O3' FAB 348 A 1 HETATM 56 C C3' FAB . . . I 2 65.57 7.166 47.326 1 7.85 ? C3' FAB 348 A 1 HETATM 57 C C4' FAB . . . I 2 64.111 7.366 46.898 1 1.11 ? C4' FAB 348 A 1 HETATM 58 C C5' FAB . . . I 2 66.229 6.892 45.995 1 10.05 ? C5' FAB 348 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 58 #