data_1DAP # _model_server_result.job_id mVwn8JWw2QOMNT3ofGRDrQ _model_server_result.datetime_utc '2024-12-03 19:41:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1DAP # _exptl.entry_id 1DAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.6 _cell.angle_gamma 90 _cell.entry_id 1DAP _cell.length_a 75.9 _cell.length_b 65.8 _cell.length_c 84.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 1DAP _atom_sites.fract_transf_matrix[1][1] 0.013175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003928 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 400 400 NDP NDP . D 3 ACT B 1 401 401 ACT ACT . E 3 ACT B 1 402 402 ACT ACT . F 2 NDP B 1 400 400 NDP NDP . G 4 HOH A 1 401 501 HOH HOH . G 4 HOH A 2 402 502 HOH HOH . G 4 HOH A 3 403 503 HOH HOH . G 4 HOH A 4 404 504 HOH HOH . G 4 HOH A 5 405 505 HOH HOH . G 4 HOH A 6 406 506 HOH HOH . G 4 HOH A 7 407 507 HOH HOH . G 4 HOH A 8 408 508 HOH HOH . G 4 HOH A 9 409 509 HOH HOH . G 4 HOH A 10 410 510 HOH HOH . G 4 HOH A 11 411 512 HOH HOH . G 4 HOH A 12 412 513 HOH HOH . G 4 HOH A 13 413 514 HOH HOH . G 4 HOH A 14 414 515 HOH HOH . G 4 HOH A 15 415 516 HOH HOH . G 4 HOH A 16 416 517 HOH HOH . G 4 HOH A 17 417 518 HOH HOH . G 4 HOH A 18 418 519 HOH HOH . G 4 HOH A 19 419 520 HOH HOH . G 4 HOH A 20 420 521 HOH HOH . G 4 HOH A 21 421 522 HOH HOH . G 4 HOH A 22 422 523 HOH HOH . G 4 HOH A 23 423 524 HOH HOH . G 4 HOH A 24 424 525 HOH HOH . G 4 HOH A 25 425 526 HOH HOH . G 4 HOH A 26 426 527 HOH HOH . G 4 HOH A 27 427 528 HOH HOH . G 4 HOH A 28 428 529 HOH HOH . G 4 HOH A 29 429 530 HOH HOH . G 4 HOH A 30 430 531 HOH HOH . G 4 HOH A 31 431 532 HOH HOH . G 4 HOH A 32 432 533 HOH HOH . G 4 HOH A 33 433 534 HOH HOH . G 4 HOH A 34 434 535 HOH HOH . G 4 HOH A 35 435 536 HOH HOH . G 4 HOH A 36 436 537 HOH HOH . G 4 HOH A 37 437 538 HOH HOH . G 4 HOH A 38 438 541 HOH HOH . G 4 HOH A 39 439 542 HOH HOH . G 4 HOH A 40 440 543 HOH HOH . G 4 HOH A 41 441 544 HOH HOH . G 4 HOH A 42 442 545 HOH HOH . G 4 HOH A 43 443 546 HOH HOH . G 4 HOH A 44 444 547 HOH HOH . G 4 HOH A 45 445 548 HOH HOH . G 4 HOH A 46 446 549 HOH HOH . G 4 HOH A 47 447 550 HOH HOH . G 4 HOH A 48 448 551 HOH HOH . G 4 HOH A 49 449 552 HOH HOH . G 4 HOH A 50 450 553 HOH HOH . G 4 HOH A 51 451 554 HOH HOH . G 4 HOH A 52 452 555 HOH HOH . G 4 HOH A 53 453 556 HOH HOH . G 4 HOH A 54 454 557 HOH HOH . G 4 HOH A 55 455 558 HOH HOH . G 4 HOH A 56 456 559 HOH HOH . G 4 HOH A 57 457 560 HOH HOH . G 4 HOH A 58 458 561 HOH HOH . G 4 HOH A 59 459 562 HOH HOH . G 4 HOH A 60 460 563 HOH HOH . G 4 HOH A 61 461 564 HOH HOH . G 4 HOH A 62 462 565 HOH HOH . G 4 HOH A 63 463 566 HOH HOH . G 4 HOH A 64 464 567 HOH HOH . G 4 HOH A 65 465 568 HOH HOH . G 4 HOH A 66 466 569 HOH HOH . G 4 HOH A 67 467 570 HOH HOH . G 4 HOH A 68 468 571 HOH HOH . G 4 HOH A 69 469 572 HOH HOH . G 4 HOH A 70 470 573 HOH HOH . G 4 HOH A 71 471 574 HOH HOH . G 4 HOH A 72 472 575 HOH HOH . G 4 HOH A 73 473 576 HOH HOH . G 4 HOH A 74 474 577 HOH HOH . G 4 HOH A 75 475 580 HOH HOH . G 4 HOH A 76 476 502 HOH HOH . G 4 HOH A 77 477 503 HOH HOH . G 4 HOH A 78 478 572 HOH HOH . G 4 HOH A 79 479 575 HOH HOH . G 4 HOH A 80 480 576 HOH HOH . G 4 HOH A 81 481 584 HOH HOH . G 4 HOH A 82 482 586 HOH HOH . G 4 HOH A 83 483 502 HOH HOH . G 4 HOH A 84 484 504 HOH HOH . G 4 HOH A 85 485 505 HOH HOH . G 4 HOH A 86 486 506 HOH HOH . G 4 HOH A 87 487 507 HOH HOH . G 4 HOH A 88 488 508 HOH HOH . G 4 HOH A 89 489 510 HOH HOH . G 4 HOH A 90 490 511 HOH HOH . G 4 HOH A 91 491 513 HOH HOH . G 4 HOH A 92 492 516 HOH HOH . H 4 HOH B 1 403 511 HOH HOH . H 4 HOH B 2 404 539 HOH HOH . H 4 HOH B 3 405 540 HOH HOH . H 4 HOH B 4 406 578 HOH HOH . H 4 HOH B 5 407 579 HOH HOH . H 4 HOH B 6 408 501 HOH HOH . H 4 HOH B 7 409 504 HOH HOH . H 4 HOH B 8 410 505 HOH HOH . H 4 HOH B 9 411 506 HOH HOH . H 4 HOH B 10 412 507 HOH HOH . H 4 HOH B 11 413 508 HOH HOH . H 4 HOH B 12 414 509 HOH HOH . H 4 HOH B 13 415 510 HOH HOH . H 4 HOH B 14 416 511 HOH HOH . H 4 HOH B 15 417 512 HOH HOH . H 4 HOH B 16 418 513 HOH HOH . H 4 HOH B 17 419 514 HOH HOH . H 4 HOH B 18 420 515 HOH HOH . H 4 HOH B 19 421 516 HOH HOH . H 4 HOH B 20 422 517 HOH HOH . H 4 HOH B 21 423 518 HOH HOH . H 4 HOH B 22 424 519 HOH HOH . H 4 HOH B 23 425 520 HOH HOH . H 4 HOH B 24 426 521 HOH HOH . H 4 HOH B 25 427 522 HOH HOH . H 4 HOH B 26 428 523 HOH HOH . H 4 HOH B 27 429 524 HOH HOH . H 4 HOH B 28 430 525 HOH HOH . H 4 HOH B 29 431 526 HOH HOH . H 4 HOH B 30 432 527 HOH HOH . H 4 HOH B 31 433 528 HOH HOH . H 4 HOH B 32 434 529 HOH HOH . H 4 HOH B 33 435 530 HOH HOH . H 4 HOH B 34 436 531 HOH HOH . H 4 HOH B 35 437 532 HOH HOH . H 4 HOH B 36 438 533 HOH HOH . H 4 HOH B 37 439 534 HOH HOH . H 4 HOH B 38 440 535 HOH HOH . H 4 HOH B 39 441 536 HOH HOH . H 4 HOH B 40 442 537 HOH HOH . H 4 HOH B 41 443 538 HOH HOH . H 4 HOH B 42 444 539 HOH HOH . H 4 HOH B 43 445 540 HOH HOH . H 4 HOH B 44 446 541 HOH HOH . H 4 HOH B 45 447 542 HOH HOH . H 4 HOH B 46 448 543 HOH HOH . H 4 HOH B 47 449 544 HOH HOH . H 4 HOH B 48 450 545 HOH HOH . H 4 HOH B 49 451 546 HOH HOH . H 4 HOH B 50 452 547 HOH HOH . H 4 HOH B 51 453 548 HOH HOH . H 4 HOH B 52 454 549 HOH HOH . H 4 HOH B 53 455 550 HOH HOH . H 4 HOH B 54 456 551 HOH HOH . H 4 HOH B 55 457 552 HOH HOH . H 4 HOH B 56 458 553 HOH HOH . H 4 HOH B 57 459 554 HOH HOH . H 4 HOH B 58 460 555 HOH HOH . H 4 HOH B 59 461 556 HOH HOH . H 4 HOH B 60 462 557 HOH HOH . H 4 HOH B 61 463 558 HOH HOH . H 4 HOH B 62 464 559 HOH HOH . H 4 HOH B 63 465 560 HOH HOH . H 4 HOH B 64 466 561 HOH HOH . H 4 HOH B 65 467 562 HOH HOH . H 4 HOH B 66 468 563 HOH HOH . H 4 HOH B 67 469 564 HOH HOH . H 4 HOH B 68 470 565 HOH HOH . H 4 HOH B 69 471 566 HOH HOH . H 4 HOH B 70 472 567 HOH HOH . H 4 HOH B 71 473 568 HOH HOH . H 4 HOH B 72 474 569 HOH HOH . H 4 HOH B 73 475 570 HOH HOH . H 4 HOH B 74 476 571 HOH HOH . H 4 HOH B 75 477 573 HOH HOH . H 4 HOH B 76 478 574 HOH HOH . H 4 HOH B 77 479 577 HOH HOH . H 4 HOH B 78 480 578 HOH HOH . H 4 HOH B 79 481 579 HOH HOH . H 4 HOH B 80 482 580 HOH HOH . H 4 HOH B 81 483 581 HOH HOH . H 4 HOH B 82 484 582 HOH HOH . H 4 HOH B 83 485 583 HOH HOH . H 4 HOH B 84 486 585 HOH HOH . H 4 HOH B 85 487 501 HOH HOH . H 4 HOH B 86 488 503 HOH HOH . H 4 HOH B 87 489 509 HOH HOH . H 4 HOH B 88 490 512 HOH HOH . H 4 HOH B 89 491 514 HOH HOH . H 4 HOH B 90 492 515 HOH HOH . H 4 HOH B 91 493 517 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 3 12.157 30.511 39.002 1 27.57 ? C ACT 401 B 1 HETATM 2 O O ACT . . . D 3 13.312 30.124 39.432 1 26.7 ? O ACT 401 B 1 HETATM 3 O OXT ACT . . . D 3 11.085 29.8 38.985 1 21.78 ? OXT ACT 401 B 1 HETATM 4 C CH3 ACT . . . D 3 12.003 31.941 38.442 1 29.07 ? CH3 ACT 401 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #