data_1DAT # _model_server_result.job_id 33krtpZk38nhZubxARLWig _model_server_result.datetime_utc '2024-11-24 02:03:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 1DAT # _exptl.entry_id 1DAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DAT _cell.length_a 183.7 _cell.length_b 183.7 _cell.length_c 183.7 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 80 A ASP 80 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 A OD1 ASP 80 A ASP 80 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc3 A OD2 ASP 80 A ASP 80 72_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 A OD1 ASP 80 A ASP 80 72_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc5 A NE2 GLN 82 A GLN 82 51_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc6 A NE2 GLN 82 A GLN 82 22_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc7 A OE1 GLU 130 A GLU 130 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 A OE1 GLU 130 A GLU 130 5_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc9 A OE1 GLU 130 A GLU 130 9_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DAT _atom_sites.fract_transf_matrix[1][1] 0.005444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 201 CD CD . C 2 CD A 1 202 202 CD CD . D 2 CD A 1 203 203 CD CD . E 3 HOH A 1 211 211 HOH HOH . E 3 HOH A 2 212 212 HOH HOH . E 3 HOH A 3 213 213 HOH HOH . E 3 HOH A 4 214 214 HOH HOH . E 3 HOH A 5 215 215 HOH HOH . E 3 HOH A 6 216 216 HOH HOH . E 3 HOH A 7 217 217 HOH HOH . E 3 HOH A 8 218 218 HOH HOH . E 3 HOH A 9 219 219 HOH HOH . E 3 HOH A 10 220 220 HOH HOH . E 3 HOH A 11 221 221 HOH HOH . E 3 HOH A 12 222 222 HOH HOH . E 3 HOH A 13 223 223 HOH HOH . E 3 HOH A 14 224 224 HOH HOH . E 3 HOH A 15 225 225 HOH HOH . E 3 HOH A 16 226 226 HOH HOH . E 3 HOH A 17 227 227 HOH HOH . E 3 HOH A 18 228 228 HOH HOH . E 3 HOH A 19 229 229 HOH HOH . E 3 HOH A 20 230 230 HOH HOH . E 3 HOH A 21 231 231 HOH HOH . E 3 HOH A 22 232 232 HOH HOH . E 3 HOH A 23 233 233 HOH HOH . E 3 HOH A 24 234 234 HOH HOH . E 3 HOH A 25 235 235 HOH HOH . E 3 HOH A 26 236 236 HOH HOH . E 3 HOH A 27 237 237 HOH HOH . E 3 HOH A 28 238 238 HOH HOH . E 3 HOH A 29 239 239 HOH HOH . E 3 HOH A 30 240 240 HOH HOH . E 3 HOH A 31 241 241 HOH HOH . E 3 HOH A 32 242 242 HOH HOH . E 3 HOH A 33 243 243 HOH HOH . E 3 HOH A 34 244 244 HOH HOH . E 3 HOH A 35 245 245 HOH HOH . E 3 HOH A 36 246 246 HOH HOH . E 3 HOH A 37 247 247 HOH HOH . E 3 HOH A 38 248 248 HOH HOH . E 3 HOH A 39 249 249 HOH HOH . E 3 HOH A 40 250 250 HOH HOH . E 3 HOH A 41 251 251 HOH HOH . E 3 HOH A 42 252 252 HOH HOH . E 3 HOH A 43 253 253 HOH HOH . E 3 HOH A 44 254 254 HOH HOH . E 3 HOH A 45 255 255 HOH HOH . E 3 HOH A 46 256 256 HOH HOH . E 3 HOH A 47 257 257 HOH HOH . E 3 HOH A 48 258 258 HOH HOH . E 3 HOH A 49 259 259 HOH HOH . E 3 HOH A 50 260 260 HOH HOH . E 3 HOH A 51 261 261 HOH HOH . E 3 HOH A 52 262 262 HOH HOH . E 3 HOH A 53 263 263 HOH HOH . E 3 HOH A 54 264 264 HOH HOH . E 3 HOH A 55 265 265 HOH HOH . E 3 HOH A 56 266 266 HOH HOH . E 3 HOH A 57 267 267 HOH HOH . E 3 HOH A 58 268 268 HOH HOH . E 3 HOH A 59 269 269 HOH HOH . E 3 HOH A 60 270 270 HOH HOH . E 3 HOH A 61 271 271 HOH HOH . E 3 HOH A 62 272 272 HOH HOH . E 3 HOH A 63 273 273 HOH HOH . E 3 HOH A 64 274 274 HOH HOH . E 3 HOH A 65 275 275 HOH HOH . E 3 HOH A 66 276 276 HOH HOH . E 3 HOH A 67 277 277 HOH HOH . E 3 HOH A 68 278 278 HOH HOH . E 3 HOH A 69 279 279 HOH HOH . E 3 HOH A 70 280 280 HOH HOH . E 3 HOH A 71 281 281 HOH HOH . E 3 HOH A 72 282 282 HOH HOH . E 3 HOH A 73 283 283 HOH HOH . E 3 HOH A 74 284 284 HOH HOH . E 3 HOH A 75 285 275 HOH HOH . E 3 HOH A 76 286 286 HOH HOH . E 3 HOH A 77 287 287 HOH HOH . E 3 HOH A 78 288 288 HOH HOH . E 3 HOH A 79 289 289 HOH HOH . E 3 HOH A 80 290 290 HOH HOH . E 3 HOH A 81 291 291 HOH HOH . E 3 HOH A 82 292 292 HOH HOH . E 3 HOH A 83 293 293 HOH HOH . E 3 HOH A 84 294 294 HOH HOH . E 3 HOH A 85 295 295 HOH HOH . E 3 HOH A 86 296 296 HOH HOH . E 3 HOH A 87 297 297 HOH HOH . E 3 HOH A 88 298 298 HOH HOH . E 3 HOH A 89 299 299 HOH HOH . E 3 HOH A 90 300 300 HOH HOH . E 3 HOH A 91 301 301 HOH HOH . E 3 HOH A 92 302 302 HOH HOH . E 3 HOH A 93 303 303 HOH HOH . E 3 HOH A 94 304 304 HOH HOH . E 3 HOH A 95 305 305 HOH HOH . E 3 HOH A 96 306 306 HOH HOH . E 3 HOH A 97 307 307 HOH HOH . E 3 HOH A 98 308 308 HOH HOH . E 3 HOH A 99 309 309 HOH HOH . E 3 HOH A 100 310 310 HOH HOH . E 3 HOH A 101 311 311 HOH HOH . E 3 HOH A 102 312 312 HOH HOH . E 3 HOH A 103 313 313 HOH HOH . E 3 HOH A 104 314 314 HOH HOH . E 3 HOH A 105 315 315 HOH HOH . E 3 HOH A 106 316 316 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 48.936 _atom_site.Cartn_y 0 _atom_site.Cartn_z 42.913 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 7.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 897 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #