data_1DB5 # _model_server_result.job_id P53y4Q1-SNF_NCkuCGXHKw _model_server_result.datetime_utc '2024-12-14 06:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1db5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 1DB5 # _exptl.entry_id 1DB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(1-BENZYL-3-CARBAMOYLMETHYL-2-METHYL-1H-INDOL-5-YLOXY)-BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DB5 _cell.length_a 76.36 _cell.length_b 76.36 _cell.length_c 91.53 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 49 A CYS 49 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 50 A CYS 50 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 59 A CYS 59 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 77 A CYS 77 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O PHE 23 A PHE 23 1_555 C CA CA . A CA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc2 A O GLY 25 A GLY 25 1_555 C CA CA . A CA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc3 A O HIS 27 A HIS 27 1_555 B CA CA . A CA 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 A O GLY 29 A GLY 29 1_555 B CA CA . A CA 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 A O GLY 31 A GLY 31 1_555 B CA CA . A CA 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc6 A OD1 ASP 48 A ASP 48 1_555 B CA CA . A CA 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc7 A OD2 ASP 48 A ASP 48 1_555 B CA CA . A CA 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc8 A O TYR 112 A TYR 112 1_555 C CA CA . A CA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc9 A OD1 ASN 114 A ASN 114 1_555 C CA CA . A CA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc10 B CA CA . A CA 198 1_555 D O40 6IN . A 6IN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc11 B CA CA . A CA 198 1_555 D O54 6IN . A 6IN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc12 C CA CA . A CA 199 1_555 E O HOH . A HOH 237 12_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? # _chem_comp.formula 'C22 H24 N2 O4' _chem_comp.formula_weight 380.437 _chem_comp.id 6IN _chem_comp.mon_nstd_flag . _chem_comp.name '4-(1-BENZYL-3-CARBAMOYLMETHYL-2-METHYL-1H-INDOL-5-YLOXY)-BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6IN sing 1 n y C1 C6 6IN doub 2 n y C1 O41 6IN sing 3 n n C2 C3 6IN doub 4 n y C2 H2 6IN sing 5 n n C3 C4 6IN sing 6 n y C3 H3 6IN sing 7 n n C4 C5 6IN doub 8 n y C4 N10 6IN sing 9 n y C5 C6 6IN sing 10 n y C5 C12 6IN sing 11 n y C6 H6 6IN sing 12 n n N10 C7 6IN sing 13 n y N10 C13 6IN sing 14 n n C7 C12 6IN doub 15 n y C7 C27 6IN sing 16 n n C12 C32 6IN sing 17 n n C13 C14 6IN sing 18 n n C13 H131 6IN sing 19 n n C13 H132 6IN sing 20 n n C14 C17 6IN doub 21 n y C14 C21 6IN sing 22 n y C17 C18 6IN sing 23 n y C17 H17 6IN sing 24 n n C18 C19 6IN doub 25 n y C18 H18 6IN sing 26 n n C19 C20 6IN sing 27 n y C19 H19 6IN sing 28 n n C20 C21 6IN doub 29 n y C20 H20 6IN sing 30 n n C21 H21 6IN sing 31 n n C27 H271 6IN sing 32 n n C27 H272 6IN sing 33 n n C27 H273 6IN sing 34 n n C32 C34 6IN sing 35 n n C32 H321 6IN sing 36 n n C32 H322 6IN sing 37 n n C34 N37 6IN sing 38 n n C34 O40 6IN doub 39 n n N37 H371 6IN sing 40 n n N37 H372 6IN sing 41 n n O41 C42 6IN sing 42 n n C42 C43 6IN sing 43 n n C42 H421 6IN sing 44 n n C42 H422 6IN sing 45 n n C43 C46 6IN sing 46 n n C43 H431 6IN sing 47 n n C43 H432 6IN sing 48 n n C46 C49 6IN sing 49 n n C46 H461 6IN sing 50 n n C46 H462 6IN sing 51 n n C49 O52 6IN sing 52 n n C49 O54 6IN doub 53 n n O52 HXT 6IN sing 54 n n # _atom_sites.entry_id 1DB5 _atom_sites.fract_transf_matrix[1][1] 0.013096 _atom_sites.fract_transf_matrix[1][2] 0.007561 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 198 198 CA CA . C 2 CA A 1 199 199 CA CA . D 3 6IN A 1 200 200 6IN 6IN . E 4 HOH A 1 201 201 HOH HOH . E 4 HOH A 2 202 202 HOH HOH . E 4 HOH A 3 203 203 HOH HOH . E 4 HOH A 4 204 204 HOH HOH . E 4 HOH A 5 205 205 HOH HOH . E 4 HOH A 6 206 206 HOH HOH . E 4 HOH A 7 207 207 HOH HOH . E 4 HOH A 8 208 208 HOH HOH . E 4 HOH A 9 209 209 HOH HOH . E 4 HOH A 10 210 210 HOH HOH . E 4 HOH A 11 211 211 HOH HOH . E 4 HOH A 12 212 212 HOH HOH . E 4 HOH A 13 213 213 HOH HOH . E 4 HOH A 14 214 214 HOH HOH . E 4 HOH A 15 215 215 HOH HOH . E 4 HOH A 16 217 217 HOH HOH . E 4 HOH A 17 218 218 HOH HOH . E 4 HOH A 18 219 219 HOH HOH . E 4 HOH A 19 220 220 HOH HOH . E 4 HOH A 20 221 221 HOH HOH . E 4 HOH A 21 222 222 HOH HOH . E 4 HOH A 22 223 223 HOH HOH . E 4 HOH A 23 224 224 HOH HOH . E 4 HOH A 24 225 225 HOH HOH . E 4 HOH A 25 226 226 HOH HOH . E 4 HOH A 26 227 227 HOH HOH . E 4 HOH A 27 228 228 HOH HOH . E 4 HOH A 28 230 230 HOH HOH . E 4 HOH A 29 231 231 HOH HOH . E 4 HOH A 30 232 232 HOH HOH . E 4 HOH A 31 233 233 HOH HOH . E 4 HOH A 32 235 235 HOH HOH . E 4 HOH A 33 236 236 HOH HOH . E 4 HOH A 34 237 237 HOH HOH . E 4 HOH A 35 238 238 HOH HOH . E 4 HOH A 36 239 239 HOH HOH . E 4 HOH A 37 240 240 HOH HOH . E 4 HOH A 38 342 342 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6IN . . . D 3 59.349 27.875 47.058 1 21.99 ? C1 6IN 200 A 1 HETATM 2 C C2 6IN . . . D 3 59.899 28.453 48.226 1 22.13 ? C2 6IN 200 A 1 HETATM 3 C C3 6IN . . . D 3 59.838 29.846 48.383 1 20.6 ? C3 6IN 200 A 1 HETATM 4 C C4 6IN . . . D 3 59.235 30.69 47.419 1 19.26 ? C4 6IN 200 A 1 HETATM 5 C C5 6IN . . . D 3 58.688 30.121 46.275 1 20.23 ? C5 6IN 200 A 1 HETATM 6 C C6 6IN . . . D 3 58.753 28.723 46.113 1 20.13 ? C6 6IN 200 A 1 HETATM 7 N N10 6IN . . . D 3 59.048 32.043 47.339 1 18.14 ? N10 6IN 200 A 1 HETATM 8 C C7 6IN . . . D 3 58.392 32.329 46.163 1 18.91 ? C7 6IN 200 A 1 HETATM 9 C C12 6IN . . . D 3 58.155 31.132 45.463 1 20.18 ? C12 6IN 200 A 1 HETATM 10 C C13 6IN . . . D 3 59.434 33.092 48.309 1 17.54 ? C13 6IN 200 A 1 HETATM 11 C C14 6IN . . . D 3 60.92 33.162 48.604 1 19.23 ? C14 6IN 200 A 1 HETATM 12 C C17 6IN . . . D 3 61.887 32.937 47.608 1 17.92 ? C17 6IN 200 A 1 HETATM 13 C C18 6IN . . . D 3 63.25 33.009 47.923 1 20.25 ? C18 6IN 200 A 1 HETATM 14 C C19 6IN . . . D 3 63.673 33.281 49.207 1 18.75 ? C19 6IN 200 A 1 HETATM 15 C C20 6IN . . . D 3 62.729 33.506 50.212 1 20.29 ? C20 6IN 200 A 1 HETATM 16 C C21 6IN . . . D 3 61.348 33.442 49.93 1 20.84 ? C21 6IN 200 A 1 HETATM 17 C C27 6IN . . . D 3 57.985 33.738 45.683 1 16.89 ? C27 6IN 200 A 1 HETATM 18 C C32 6IN . . . D 3 57.458 31.011 44.128 1 21.29 ? C32 6IN 200 A 1 HETATM 19 C C34 6IN . . . D 3 56.489 29.906 43.989 1 21.32 ? C34 6IN 200 A 1 HETATM 20 N N37 6IN . . . D 3 56.684 29.289 42.876 1 21.64 ? N37 6IN 200 A 1 HETATM 21 O O40 6IN . . . D 3 55.668 29.609 44.869 1 20.94 ? O40 6IN 200 A 1 HETATM 22 O O41 6IN . . . D 3 59.381 26.491 46.864 1 22.93 ? O41 6IN 200 A 1 HETATM 23 C C42 6IN . . . D 3 58.763 25.926 45.724 1 27 ? C42 6IN 200 A 1 HETATM 24 C C43 6IN . . . D 3 57.565 25.236 46.319 1 28.45 ? C43 6IN 200 A 1 HETATM 25 C C46 6IN . . . D 3 56.724 24.568 45.286 1 32.47 ? C46 6IN 200 A 1 HETATM 26 C C49 6IN . . . D 3 55.24 24.812 45.521 1 35.51 ? C49 6IN 200 A 1 HETATM 27 O O52 6IN . . . D 3 54.56 23.893 44.855 1 37.31 ? O52 6IN 200 A 1 HETATM 28 O O54 6IN . . . D 3 54.628 25.665 46.21 1 35.53 ? O54 6IN 200 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #