data_1DB6 # _model_server_result.job_id zwStVJDCxwAVYftwt-cuLQ _model_server_result.datetime_utc '2024-11-04 22:54:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1db6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":23}' # _entry.id 1DB6 # _exptl.entry_id 1DB6 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 174.224 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININEAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DB6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 A N1 DG 22 A DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 A O6 DG 22 A DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 A N2 DG 22 A DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 A N3 DC 21 A DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 A O2 DC 21 A DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 A N4 DC 21 A DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DG MISPAIR' hydrog7 A N6 DA 3 A DA 3 1_555 A O6 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 3 A DA 3 1_555 A N3 DT 20 A DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 3 A DA 3 1_555 A O4 DT 20 A DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog10 A N4 DC 4 A DC 4 1_555 A O6 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 4 A DC 4 1_555 A N1 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 4 A DC 4 1_555 A O6 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 4 A DC 4 1_555 A N2 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 5 A DC 5 1_555 A N1 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 5 A DC 5 1_555 A O6 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 5 A DC 5 1_555 A N2 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_25_PAIR hydrog17 A N6 DA 6 A DA 6 1_555 A N3 DC 15 A DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_25_PAIR hydrog18 A N7 DA 6 A DA 6 1_555 A N4 DC 15 A DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DA 6 A DA 6 1_555 A N3 DT 17 A DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 DA 6 A DA 6 1_555 A O4 DT 17 A DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_25_PAIR hydrog21 A N6 DA 7 A DA 7 1_555 A N3 DC 15 A DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_25_PAIR hydrog22 A N7 DA 7 A DA 7 1_555 A N4 DC 15 A DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 9 A DG 9 1_555 A N3 DC 16 A DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 9 A DG 9 1_555 A O2 DC 16 A DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 9 A DG 9 1_555 A N4 DC 16 A DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_27_PAIR hydrog26 A N3 DT 10 A DT 10 1_555 A O6 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_27_PAIR hydrog27 A O4 DT 10 A DT 10 1_555 A N1 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H16 N5 O 1' _chem_comp.formula_weight 174.224 _chem_comp.id AAR _chem_comp.mon_nstd_flag n _chem_comp.name ARGININEAMIDE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA AAR sing 1 n n N H AAR sing 2 n n N H2 AAR sing 3 n n CA CB AAR sing 4 n n CA C AAR sing 5 n n CA HA AAR sing 6 n n CB CG AAR sing 7 n n CB HB2 AAR sing 8 n n CB HB3 AAR sing 9 n n CG CD AAR sing 10 n n CG HG2 AAR sing 11 n n CG HG3 AAR sing 12 n n CD NE AAR sing 13 n n CD HD2 AAR sing 14 n n CD HD3 AAR sing 15 n n NE CZ AAR sing 16 n n NE HE AAR sing 17 n n CZ NH1 AAR sing 18 n n CZ NH2 AAR doub 19 n n NH1 HH11 AAR sing 20 n n NH1 HH12 AAR sing 21 n n NH2 HH21 AAR sing 22 n n NH2 HH22 AAR sing 23 n n C O AAR doub 24 n n C NT AAR sing 25 n n NT HNT1 AAR sing 26 n n NT HNT2 AAR sing 27 n n # _atom_sites.entry_id 1DB6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id AAR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 23 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id AAR _pdbx_nonpoly_scheme.auth_mon_id AAR _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N AAR . . . B 2 -15.663 5.26 12.725 1 0 ? N AAR 23 A 1 HETATM 2 C CA AAR . . . B 2 -16.145 3.894 12.481 1 0 ? CA AAR 23 A 1 HETATM 3 C CB AAR . . . B 2 -15.001 2.88 12.536 1 0 ? CB AAR 23 A 1 HETATM 4 C CG AAR . . . B 2 -13.837 3.251 11.613 1 0 ? CG AAR 23 A 1 HETATM 5 C CD AAR . . . B 2 -12.886 4.259 12.258 1 0 ? CD AAR 23 A 1 HETATM 6 N NE AAR . . . B 2 -12.403 3.78 13.555 1 0 ? NE AAR 23 A 1 HETATM 7 C CZ AAR . . . B 2 -11.224 4.13 14.092 1 0 ? CZ AAR 23 A 1 HETATM 8 N NH1 AAR . . . B 2 -10.894 3.682 15.311 1 0 ? NH1 AAR 23 A 1 HETATM 9 N NH2 AAR . . . B 2 -10.379 4.92 13.416 1 0 ? NH2 AAR 23 A 1 HETATM 10 C C AAR . . . B 2 -17.228 3.51 13.48 1 0 ? C AAR 23 A 1 HETATM 11 O O AAR . . . B 2 -17.281 2.369 13.933 1 0 ? O AAR 23 A 1 HETATM 12 N NT AAR . . . B 2 -18.087 4.47 13.833 1 0 ? NT AAR 23 A 1 HETATM 13 H H2 AAR . . . B 2 -15.189 5.295 13.616 1 0 ? H2 AAR 23 A 1 HETATM 14 H H AAR . . . B 2 -16.448 5.896 12.736 1 0 ? H AAR 23 A 1 HETATM 15 H HA AAR . . . B 2 -16.579 3.869 11.482 1 0 ? HA AAR 23 A 1 HETATM 16 H HB2 AAR . . . B 2 -14.644 2.788 13.561 1 0 ? HB2 AAR 23 A 1 HETATM 17 H HB3 AAR . . . B 2 -15.398 1.915 12.219 1 0 ? HB3 AAR 23 A 1 HETATM 18 H HG2 AAR . . . B 2 -13.264 2.35 11.404 1 0 ? HG2 AAR 23 A 1 HETATM 19 H HG3 AAR . . . B 2 -14.219 3.651 10.674 1 0 ? HG3 AAR 23 A 1 HETATM 20 H HD2 AAR . . . B 2 -12.042 4.407 11.586 1 0 ? HD2 AAR 23 A 1 HETATM 21 H HD3 AAR . . . B 2 -13.389 5.213 12.399 1 0 ? HD3 AAR 23 A 1 HETATM 22 H HE AAR . . . B 2 -13.012 3.173 14.084 1 0 ? HE AAR 23 A 1 HETATM 23 H HH11 AAR . . . B 2 -11.526 3.071 15.81 1 0 ? HH11 AAR 23 A 1 HETATM 24 H HH12 AAR . . . B 2 -10.006 3.932 15.723 1 0 ? HH12 AAR 23 A 1 HETATM 25 H HH21 AAR . . . B 2 -10.615 5.242 12.487 1 0 ? HH21 AAR 23 A 1 HETATM 26 H HH22 AAR . . . B 2 -9.49 5.176 13.821 1 0 ? HH22 AAR 23 A 1 HETATM 27 H HNT1 AAR . . . B 2 -18.007 5.394 13.434 1 0 ? HNT1 AAR 23 A 1 HETATM 28 H HNT2 AAR . . . B 2 -18.815 4.268 14.503 1 0 ? HNT2 AAR 23 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 2185 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #