data_1DBJ # _model_server_result.job_id 4yc9Uydpw8-nfU7lzTg0aw _model_server_result.datetime_utc '2025-07-16 06:08:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":229}' # _entry.id 1DBJ # _exptl.entry_id 1DBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.44 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description AETIOCHOLANOLONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DBJ _cell.length_a 134.76 _cell.length_b 134.76 _cell.length_c 124.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 B SG CYS 146 H CYS 142 1_555 B SG CYS 201 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C19 H30 O2' _chem_comp.formula_weight 290.44 _chem_comp.id AE2 _chem_comp.mon_nstd_flag . _chem_comp.name AETIOCHOLANOLONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AE2 sing 1 n n C1 C10 AE2 sing 2 n n C1 H11 AE2 sing 3 n n C1 H12 AE2 sing 4 n n C2 C3 AE2 sing 5 n n C2 H21 AE2 sing 6 n n C2 H22 AE2 sing 7 n n C3 O3 AE2 sing 8 n n C3 C4 AE2 sing 9 n n C3 H3 AE2 sing 10 n n O3 HO3 AE2 sing 11 n n C4 C5 AE2 sing 12 n n C4 H41 AE2 sing 13 n n C4 H42 AE2 sing 14 n n C5 C6 AE2 sing 15 n n C5 C10 AE2 sing 16 n n C5 H5 AE2 sing 17 n n C6 C7 AE2 sing 18 n n C6 H61 AE2 sing 19 n n C6 H62 AE2 sing 20 n n C7 C8 AE2 sing 21 n n C7 H71 AE2 sing 22 n n C7 H72 AE2 sing 23 n n C8 C9 AE2 sing 24 n n C8 C14 AE2 sing 25 n n C8 H8 AE2 sing 26 n n C9 C10 AE2 sing 27 n n C9 C11 AE2 sing 28 n n C9 H9 AE2 sing 29 n n C10 C19 AE2 sing 30 n n C11 C12 AE2 sing 31 n n C11 H111 AE2 sing 32 n n C11 H112 AE2 sing 33 n n C12 C13 AE2 sing 34 n n C12 H121 AE2 sing 35 n n C12 H122 AE2 sing 36 n n C13 C14 AE2 sing 37 n n C13 C17 AE2 sing 38 n n C13 C18 AE2 sing 39 n n C14 C15 AE2 sing 40 n n C14 H14 AE2 sing 41 n n C15 C16 AE2 sing 42 n n C15 H151 AE2 sing 43 n n C15 H152 AE2 sing 44 n n C16 C17 AE2 sing 45 n n C16 H161 AE2 sing 46 n n C16 H162 AE2 sing 47 n n C17 O17 AE2 doub 48 n n C18 H181 AE2 sing 49 n n C18 H182 AE2 sing 50 n n C18 H183 AE2 sing 51 n n C19 H191 AE2 sing 52 n n C19 H192 AE2 sing 53 n n C19 H193 AE2 sing 54 n n # _atom_sites.entry_id 1DBJ _atom_sites.fract_transf_matrix[1][1] 0.007421 _atom_sites.fract_transf_matrix[1][2] 0.004284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AE2 H 1 229 1 AE2 AE2 . D 4 HOH H 1 230 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AE2 . . . C 3 -19.325 42.449 -11.162 1 29.12 ? C1 AE2 229 H 1 HETATM 2 C C2 AE2 . . . C 3 -20.069 41.103 -11.141 1 31.25 ? C2 AE2 229 H 1 HETATM 3 C C3 AE2 . . . C 3 -20.246 40.598 -12.567 1 31.24 ? C3 AE2 229 H 1 HETATM 4 O O3 AE2 . . . C 3 -21.001 39.392 -12.572 1 32.61 ? O3 AE2 229 H 1 HETATM 5 C C4 AE2 . . . C 3 -20.999 41.651 -13.448 1 30.62 ? C4 AE2 229 H 1 HETATM 6 C C5 AE2 . . . C 3 -20.143 42.943 -13.486 1 29 ? C5 AE2 229 H 1 HETATM 7 C C6 AE2 . . . C 3 -20.843 43.947 -14.422 1 28.83 ? C6 AE2 229 H 1 HETATM 8 C C7 AE2 . . . C 3 -22.142 44.5 -13.843 1 28.8 ? C7 AE2 229 H 1 HETATM 9 C C8 AE2 . . . C 3 -22.056 44.955 -12.405 1 27.22 ? C8 AE2 229 H 1 HETATM 10 C C9 AE2 . . . C 3 -21.407 43.882 -11.508 1 27.06 ? C9 AE2 229 H 1 HETATM 11 C C10 AE2 . . . C 3 -19.992 43.524 -12.044 1 28.12 ? C10 AE2 229 H 1 HETATM 12 C C11 AE2 . . . C 3 -21.363 44.332 -10.084 1 26.04 ? C11 AE2 229 H 1 HETATM 13 C C12 AE2 . . . C 3 -22.752 44.72 -9.579 1 26.99 ? C12 AE2 229 H 1 HETATM 14 C C13 AE2 . . . C 3 -23.397 45.746 -10.463 1 26.77 ? C13 AE2 229 H 1 HETATM 15 C C14 AE2 . . . C 3 -23.444 45.246 -11.893 1 26.56 ? C14 AE2 229 H 1 HETATM 16 C C15 AE2 . . . C 3 -24.516 46.088 -12.573 1 26.02 ? C15 AE2 229 H 1 HETATM 17 C C16 AE2 . . . C 3 -25.582 46.165 -11.485 1 26.21 ? C16 AE2 229 H 1 HETATM 18 C C17 AE2 . . . C 3 -24.841 45.942 -10.17 1 26.54 ? C17 AE2 229 H 1 HETATM 19 O O17 AE2 . . . C 3 -25.33 45.955 -9.041 1 26.9 ? O17 AE2 229 H 1 HETATM 20 C C18 AE2 . . . C 3 -22.723 47.109 -10.241 1 26.43 ? C18 AE2 229 H 1 HETATM 21 C C19 AE2 . . . C 3 -18.987 44.645 -11.99 1 25.27 ? C19 AE2 229 H 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #