data_1DBM # _model_server_result.job_id 7LCinyqBllzvPEwTV3gBrQ _model_server_result.datetime_utc '2025-07-12 14:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":229}' # _entry.id 1DBM # _exptl.entry_id 1DBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE-11-ALPHA-OL-HEMISUCCINATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DBM _cell.length_a 134.76 _cell.length_b 134.76 _cell.length_c 124.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? disulf ? disulf4 B SG CYS 146 H CYS 142 1_555 B SG CYS 201 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C25 H34 O6' _chem_comp.formula_weight 430.534 _chem_comp.id SIH _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE-11-ALPHA-OL-HEMISUCCINATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIH sing 288 n n C1 C10 SIH sing 289 n n C1 H11A SIH sing 290 n n C1 H12 SIH sing 291 n n C2 C3 SIH sing 292 n n C2 H21 SIH sing 293 n n C2 H22 SIH sing 294 n n C3 O3 SIH doub 295 n n C3 C4 SIH sing 296 n n C4 C5 SIH doub 297 n n C4 H41 SIH sing 298 n n C5 C6 SIH sing 299 n n C5 C10 SIH sing 300 n n C6 C7 SIH sing 301 n n C6 H61 SIH sing 302 n n C6 H62 SIH sing 303 n n C7 C8 SIH sing 304 n n C7 H71 SIH sing 305 n n C7 H72 SIH sing 306 n n C8 C9 SIH sing 307 n n C8 C14 SIH sing 308 n n C8 H8 SIH sing 309 n n C9 C10 SIH sing 310 n n C9 C11 SIH sing 311 n n C9 H9 SIH sing 312 n n C10 C19 SIH sing 313 n n C11 O11 SIH sing 314 n n C11 C12 SIH sing 315 n n C11 H11 SIH sing 316 n n O11 CH1 SIH sing 317 n n C12 C13 SIH sing 318 n n C12 H121 SIH sing 319 n n C12 H122 SIH sing 320 n n C13 C14 SIH sing 321 n n C13 C17 SIH sing 322 n n C13 C18 SIH sing 323 n n C14 C15 SIH sing 324 n n C14 H14 SIH sing 325 n n C15 C16 SIH sing 326 n n C15 H151 SIH sing 327 n n C15 H152 SIH sing 328 n n C16 C17 SIH sing 329 n n C16 H161 SIH sing 330 n n C16 H162 SIH sing 331 n n C17 C20 SIH sing 332 n n C17 H17 SIH sing 333 n n C18 H181 SIH sing 334 n n C18 H182 SIH sing 335 n n C18 H183 SIH sing 336 n n C19 H191 SIH sing 337 n n C19 H192 SIH sing 338 n n C19 H193 SIH sing 339 n n C20 O20 SIH doub 340 n n C20 C21 SIH sing 341 n n C21 H211 SIH sing 342 n n C21 H212 SIH sing 343 n n C21 H213 SIH sing 344 n n CH1 OH1 SIH doub 345 n n CH1 CH2 SIH sing 346 n n CH2 CH3 SIH sing 347 n n CH2 HH21 SIH sing 348 n n CH2 HH22 SIH sing 349 n n CH3 CH4 SIH sing 350 n n CH3 HH31 SIH sing 351 n n CH3 HH32 SIH sing 352 n n CH4 OH4 SIH doub 353 n n CH4 OH5 SIH sing 354 n n OH5 HOH5 SIH sing 355 n n # _atom_sites.entry_id 1DBM _atom_sites.fract_transf_matrix[1][1] 0.007421 _atom_sites.fract_transf_matrix[1][2] 0.004284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id SIH _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 229 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id SIH _pdbx_nonpoly_scheme.auth_mon_id SIH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIH . . . C 3 -19.826 43.05 -15.239 1 35.16 ? C1 SIH 229 H 1 HETATM 2 C C2 SIH . . . C 3 -18.511 42.503 -15.702 1 38.03 ? C2 SIH 229 H 1 HETATM 3 C C3 SIH . . . C 3 -17.517 43.501 -15.199 1 38.55 ? C3 SIH 229 H 1 HETATM 4 O O3 SIH . . . C 3 -16.845 44.211 -15.947 1 39.71 ? O3 SIH 229 H 1 HETATM 5 C C4 SIH . . . C 3 -17.399 43.629 -13.851 1 36.75 ? C4 SIH 229 H 1 HETATM 6 C C5 SIH . . . C 3 -18.558 43.488 -13.104 1 35.24 ? C5 SIH 229 H 1 HETATM 7 C C6 SIH . . . C 3 -18.581 43.566 -11.689 1 31.88 ? C6 SIH 229 H 1 HETATM 8 C C7 SIH . . . C 3 -19.423 44.726 -11.313 1 30.27 ? C7 SIH 229 H 1 HETATM 9 C C8 SIH . . . C 3 -20.823 44.379 -11.698 1 32.2 ? C8 SIH 229 H 1 HETATM 10 C C9 SIH . . . C 3 -20.942 44.245 -13.246 1 34.5 ? C9 SIH 229 H 1 HETATM 11 C C10 SIH . . . C 3 -19.945 43.154 -13.722 1 34.97 ? C10 SIH 229 H 1 HETATM 12 C C11 SIH . . . C 3 -22.457 43.813 -13.628 1 37.12 ? C11 SIH 229 H 1 HETATM 13 O O11 SIH . . . C 3 -22.682 43.934 -15.035 1 41.91 ? O11 SIH 229 H 1 HETATM 14 C C12 SIH . . . C 3 -23.431 44.739 -12.878 1 33.75 ? C12 SIH 229 H 1 HETATM 15 C C13 SIH . . . C 3 -23.13 45.043 -11.402 1 31.45 ? C13 SIH 229 H 1 HETATM 16 C C14 SIH . . . C 3 -21.733 45.465 -11.224 1 31.68 ? C14 SIH 229 H 1 HETATM 17 C C15 SIH . . . C 3 -21.73 46.058 -9.821 1 29.58 ? C15 SIH 229 H 1 HETATM 18 C C16 SIH . . . C 3 -23.199 46.456 -9.554 1 30.26 ? C16 SIH 229 H 1 HETATM 19 C C17 SIH . . . C 3 -24.004 46.101 -10.791 1 31.29 ? C17 SIH 229 H 1 HETATM 20 C C18 SIH . . . C 3 -23.294 43.72 -10.64 1 31.38 ? C18 SIH 229 H 1 HETATM 21 C C19 SIH . . . C 3 -20.39 41.756 -13.26 1 33.35 ? C19 SIH 229 H 1 HETATM 22 C C20 SIH . . . C 3 -25.465 45.79 -10.599 1 31.67 ? C20 SIH 229 H 1 HETATM 23 O O20 SIH . . . C 3 -25.859 44.988 -9.762 1 34.16 ? O20 SIH 229 H 1 HETATM 24 C C21 SIH . . . C 3 -26.493 46.464 -11.468 1 32.51 ? C21 SIH 229 H 1 HETATM 25 C CH1 SIH . . . C 3 -23.214 43.003 -15.724 1 45.47 ? CH1 SIH 229 H 1 HETATM 26 O OH1 SIH . . . C 3 -23.294 42.971 -16.978 1 46.86 ? OH1 SIH 229 H 1 HETATM 27 C CH2 SIH . . . C 3 -23.919 41.814 -15.157 1 48.42 ? CH2 SIH 229 H 1 HETATM 28 C CH3 SIH . . . C 3 -25.431 42.026 -15.391 1 54.76 ? CH3 SIH 229 H 1 HETATM 29 C CH4 SIH . . . C 3 -25.95 40.992 -16.39 1 59.58 ? CH4 SIH 229 H 1 HETATM 30 O OH4 SIH . . . C 3 -25.673 41.213 -17.594 1 60.51 ? OH4 SIH 229 H 1 HETATM 31 O OH5 SIH . . . C 3 -26.518 39.937 -15.954 1 62.2 ? OH5 SIH 229 H 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #