data_1DCK
#
_model_server_result.job_id            rcwnmRYIm1DB4YKwk5eg7Q 
_model_server_result.datetime_utc      '2025-01-02 18:12:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dck 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1002}' 
#
_entry.id    1DCK 
#
_exptl.entry_id    1DCK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         93.2 
_cell.angle_beta          103 
_cell.angle_gamma         101.8 
_cell.entry_id            1DCK 
_cell.length_a            31.7 
_cell.length_b            42.5 
_cell.length_c            44.7 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DCK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 11 A ASP 11 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc2 A OD1 ASP 54 A ASP 54 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc3 A O ARG 56 A ARG 56 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc4 C MN MN . A MN 1001 1_555 G O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc5 C MN MN . A MN 1001 1_555 G O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc6 B OD1 ASP 11 B ASP 11 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc7 B OD2 ASP 54 B ASP 54 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc8 B O ARG 56 B ARG 56 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc9 B NE2 HIS 84 B HIS 84 1_555 F MN MN . B MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc10 E MN MN . B MN 1002 1_555 H O HOH . B HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc11 E MN MN . B MN 1002 1_555 H O HOH . B HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc12 E MN MN . B MN 1002 1_555 H O HOH . B HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DCK 
_atom_sites.fract_transf_matrix[1][1]    0.031546 
_atom_sites.fract_transf_matrix[1][2]    0.00659 
_atom_sites.fract_transf_matrix[1][3]    0.008032 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024037 
_atom_sites.fract_transf_matrix[2][3]    0.002581 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 1001 1 MN MN2 . 
D 3 15P A 1 999 999 15P 15P . 
E 2 MN B 1 1002 2 MN MN2 . 
F 2 MN B 1 1003 3 MN MN2 . 
G 4 HOH A 1 1002 1 HOH H2O . 
G 4 HOH A 2 1003 2 HOH H2O . 
G 4 HOH A 3 1004 3 HOH H2O . 
G 4 HOH A 4 1005 8 HOH H2O . 
G 4 HOH A 5 1006 9 HOH H2O . 
G 4 HOH A 6 1007 10 HOH H2O . 
G 4 HOH A 7 1008 11 HOH H2O . 
G 4 HOH A 8 1009 19 HOH H2O . 
G 4 HOH A 9 1010 20 HOH H2O . 
G 4 HOH A 10 1011 21 HOH H2O . 
G 4 HOH A 11 1012 23 HOH H2O . 
G 4 HOH A 12 1013 27 HOH H2O . 
G 4 HOH A 13 1014 28 HOH H2O . 
G 4 HOH A 14 1015 29 HOH H2O . 
G 4 HOH A 15 1016 30 HOH H2O . 
G 4 HOH A 16 1017 31 HOH H2O . 
G 4 HOH A 17 1018 32 HOH H2O . 
G 4 HOH A 18 1019 39 HOH H2O . 
G 4 HOH A 19 1020 43 HOH H2O . 
G 4 HOH A 20 1021 45 HOH H2O . 
G 4 HOH A 21 1022 48 HOH H2O . 
G 4 HOH A 22 1023 49 HOH H2O . 
G 4 HOH A 23 1024 52 HOH H2O . 
G 4 HOH A 24 1025 53 HOH H2O . 
G 4 HOH A 25 1026 55 HOH H2O . 
G 4 HOH A 26 1027 56 HOH H2O . 
G 4 HOH A 27 1028 57 HOH H2O . 
G 4 HOH A 28 1029 58 HOH H2O . 
G 4 HOH A 29 1030 59 HOH H2O . 
G 4 HOH A 30 1031 60 HOH H2O . 
G 4 HOH A 31 1032 61 HOH H2O . 
G 4 HOH A 32 1033 62 HOH H2O . 
G 4 HOH A 33 1034 63 HOH H2O . 
G 4 HOH A 34 1035 64 HOH H2O . 
G 4 HOH A 35 1036 65 HOH H2O . 
G 4 HOH A 36 1037 66 HOH H2O . 
G 4 HOH A 37 1038 67 HOH H2O . 
G 4 HOH A 38 1039 68 HOH H2O . 
G 4 HOH A 39 1040 69 HOH H2O . 
G 4 HOH A 40 1041 70 HOH H2O . 
G 4 HOH A 41 1042 84 HOH H2O . 
G 4 HOH A 42 1043 85 HOH H2O . 
G 4 HOH A 43 1044 86 HOH H2O . 
G 4 HOH A 44 1045 87 HOH H2O . 
G 4 HOH A 45 1046 88 HOH H2O . 
G 4 HOH A 46 1047 90 HOH H2O . 
G 4 HOH A 47 1048 91 HOH H2O . 
H 4 HOH B 1 1004 4 HOH H2O . 
H 4 HOH B 2 1005 5 HOH H2O . 
H 4 HOH B 3 1006 6 HOH H2O . 
H 4 HOH B 4 1007 7 HOH H2O . 
H 4 HOH B 5 1008 12 HOH H2O . 
H 4 HOH B 6 1009 13 HOH H2O . 
H 4 HOH B 7 1010 14 HOH H2O . 
H 4 HOH B 8 1011 15 HOH H2O . 
H 4 HOH B 9 1012 16 HOH H2O . 
H 4 HOH B 10 1013 17 HOH H2O . 
H 4 HOH B 11 1014 18 HOH H2O . 
H 4 HOH B 12 1015 22 HOH H2O . 
H 4 HOH B 13 1016 24 HOH H2O . 
H 4 HOH B 14 1017 25 HOH H2O . 
H 4 HOH B 15 1018 26 HOH H2O . 
H 4 HOH B 16 1019 33 HOH H2O . 
H 4 HOH B 17 1020 34 HOH H2O . 
H 4 HOH B 18 1021 35 HOH H2O . 
H 4 HOH B 19 1022 36 HOH H2O . 
H 4 HOH B 20 1023 37 HOH H2O . 
H 4 HOH B 21 1024 38 HOH H2O . 
H 4 HOH B 22 1025 40 HOH H2O . 
H 4 HOH B 23 1026 41 HOH H2O . 
H 4 HOH B 24 1027 42 HOH H2O . 
H 4 HOH B 25 1028 44 HOH H2O . 
H 4 HOH B 26 1029 46 HOH H2O . 
H 4 HOH B 27 1030 47 HOH H2O . 
H 4 HOH B 28 1031 50 HOH H2O . 
H 4 HOH B 29 1032 51 HOH H2O . 
H 4 HOH B 30 1033 54 HOH H2O . 
H 4 HOH B 31 1034 71 HOH H2O . 
H 4 HOH B 32 1035 72 HOH H2O . 
H 4 HOH B 33 1036 73 HOH H2O . 
H 4 HOH B 34 1037 74 HOH H2O . 
H 4 HOH B 35 1038 75 HOH H2O . 
H 4 HOH B 36 1039 76 HOH H2O . 
H 4 HOH B 37 1040 77 HOH H2O . 
H 4 HOH B 38 1041 78 HOH H2O . 
H 4 HOH B 39 1042 79 HOH H2O . 
H 4 HOH B 40 1043 80 HOH H2O . 
H 4 HOH B 41 1044 81 HOH H2O . 
H 4 HOH B 42 1045 82 HOH H2O . 
H 4 HOH B 43 1046 83 HOH H2O . 
H 4 HOH B 44 1047 89 HOH H2O . 
H 4 HOH B 45 1048 92 HOH H2O . 
H 4 HOH B 46 1049 93 HOH H2O . 
H 4 HOH B 47 1050 94 HOH H2O . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -4.605 
_atom_site.Cartn_y               15.228 
_atom_site.Cartn_z               44.359 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30.91 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           1002 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#