data_1DCP # _model_server_result.job_id AZK5q_r269xxiGlH1q0B4Q _model_server_result.datetime_utc '2024-11-26 07:51:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":105}' # _entry.id 1DCP # _exptl.entry_id 1DCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.231 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7,8-DIHYDROBIOPTERIN _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DCP _cell.length_a 105.7 _cell.length_b 105.7 _cell.length_c 196.17 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,Q,R,S,T 1 1 E,F,G,H,M,N,O,P,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C9 H13 N5 O3' _chem_comp.formula_weight 239.231 _chem_comp.id HBI _chem_comp.mon_nstd_flag . _chem_comp.name 7,8-DIHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HBI doub 129 n y N1 C8A HBI sing 130 n y N2 C2 HBI sing 131 n n N2 HN21 HBI sing 132 n n N2 HN22 HBI sing 133 n n C2 N3 HBI sing 134 n y N3 C4 HBI sing 135 n y N3 H3 HBI sing 136 n n C4 O4 HBI doub 137 n n C4 C4A HBI sing 138 n y C4A C8A HBI doub 139 n y C4A N5 HBI sing 140 n n C8A N8 HBI sing 141 n n N8 C7 HBI sing 142 n n N8 H8 HBI sing 143 n n C7 C6 HBI sing 144 n n C7 H71 HBI sing 145 n n C7 H72 HBI sing 146 n n C6 N5 HBI doub 147 n n C6 C9 HBI sing 148 n n C9 O9 HBI sing 149 n n C9 C10 HBI sing 150 n n C9 H9 HBI sing 151 n n O9 HO9 HBI sing 152 n n C10 O10 HBI sing 153 n n C10 C11 HBI sing 154 n n C10 H10 HBI sing 155 n n O10 HO1 HBI sing 156 n n C11 H111 HBI sing 157 n n C11 H112 HBI sing 158 n n C11 H113 HBI sing 159 n n # _atom_sites.entry_id 1DCP _atom_sites.fract_transf_matrix[1][1] 0.009461 _atom_sites.fract_transf_matrix[1][2] 0.005462 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HBI A 1 105 105 HBI HBI . J 2 HBI B 1 105 105 HBI HBI . K 2 HBI C 1 105 105 HBI HBI . L 2 HBI D 1 105 105 HBI HBI . M 2 HBI E 1 105 105 HBI HBI . N 2 HBI F 1 105 105 HBI HBI . O 2 HBI G 1 105 105 HBI HBI . P 2 HBI H 1 105 105 HBI HBI . Q 3 HOH A 1 106 45 HOH HOH . Q 3 HOH A 2 107 46 HOH HOH . Q 3 HOH A 3 108 73 HOH HOH . Q 3 HOH A 4 109 74 HOH HOH . Q 3 HOH A 5 110 79 HOH HOH . Q 3 HOH A 6 111 80 HOH HOH . Q 3 HOH A 7 112 81 HOH HOH . Q 3 HOH A 8 113 86 HOH HOH . Q 3 HOH A 9 114 95 HOH HOH . Q 3 HOH A 10 115 96 HOH HOH . Q 3 HOH A 11 116 97 HOH HOH . Q 3 HOH A 12 117 99 HOH HOH . Q 3 HOH A 13 118 102 HOH HOH . Q 3 HOH A 14 119 107 HOH HOH . Q 3 HOH A 15 120 108 HOH HOH . Q 3 HOH A 16 121 116 HOH HOH . Q 3 HOH A 17 122 132 HOH HOH . Q 3 HOH A 18 123 133 HOH HOH . Q 3 HOH A 19 124 134 HOH HOH . Q 3 HOH A 20 125 143 HOH HOH . Q 3 HOH A 21 126 154 HOH HOH . Q 3 HOH A 22 127 156 HOH HOH . Q 3 HOH A 23 128 157 HOH HOH . Q 3 HOH A 24 129 158 HOH HOH . Q 3 HOH A 25 130 159 HOH HOH . Q 3 HOH A 26 131 166 HOH HOH . Q 3 HOH A 27 132 170 HOH HOH . Q 3 HOH A 28 133 172 HOH HOH . Q 3 HOH A 29 134 173 HOH HOH . Q 3 HOH A 30 135 178 HOH HOH . Q 3 HOH A 31 136 179 HOH HOH . Q 3 HOH A 32 137 204 HOH HOH . Q 3 HOH A 33 138 260 HOH HOH . Q 3 HOH A 34 139 283 HOH HOH . Q 3 HOH A 35 140 286 HOH HOH . R 3 HOH B 1 106 75 HOH HOH . R 3 HOH B 2 107 76 HOH HOH . R 3 HOH B 3 108 77 HOH HOH . R 3 HOH B 4 109 78 HOH HOH . R 3 HOH B 5 110 83 HOH HOH . R 3 HOH B 6 111 84 HOH HOH . R 3 HOH B 7 112 85 HOH HOH . R 3 HOH B 8 113 105 HOH HOH . R 3 HOH B 9 114 106 HOH HOH . R 3 HOH B 10 115 136 HOH HOH . R 3 HOH B 11 116 139 HOH HOH . R 3 HOH B 12 117 140 HOH HOH . R 3 HOH B 13 118 141 HOH HOH . R 3 HOH B 14 119 142 HOH HOH . R 3 HOH B 15 120 174 HOH HOH . R 3 HOH B 16 121 175 HOH HOH . R 3 HOH B 17 122 176 HOH HOH . R 3 HOH B 18 123 177 HOH HOH . R 3 HOH B 19 124 181 HOH HOH . R 3 HOH B 20 125 182 HOH HOH . R 3 HOH B 21 126 183 HOH HOH . R 3 HOH B 22 127 185 HOH HOH . R 3 HOH B 23 128 186 HOH HOH . R 3 HOH B 24 129 187 HOH HOH . R 3 HOH B 25 130 188 HOH HOH . R 3 HOH B 26 131 190 HOH HOH . R 3 HOH B 27 132 279 HOH HOH . R 3 HOH B 28 133 280 HOH HOH . R 3 HOH B 29 134 281 HOH HOH . R 3 HOH B 30 135 282 HOH HOH . R 3 HOH B 31 136 284 HOH HOH . S 3 HOH C 1 106 47 HOH HOH . S 3 HOH C 2 107 48 HOH HOH . S 3 HOH C 3 108 49 HOH HOH . S 3 HOH C 4 109 50 HOH HOH . S 3 HOH C 5 110 53 HOH HOH . S 3 HOH C 6 111 58 HOH HOH . S 3 HOH C 7 112 62 HOH HOH . S 3 HOH C 8 113 63 HOH HOH . S 3 HOH C 9 114 64 HOH HOH . S 3 HOH C 10 115 65 HOH HOH . S 3 HOH C 11 116 66 HOH HOH . S 3 HOH C 12 117 67 HOH HOH . S 3 HOH C 13 118 68 HOH HOH . S 3 HOH C 14 119 69 HOH HOH . S 3 HOH C 15 120 70 HOH HOH . S 3 HOH C 16 121 71 HOH HOH . S 3 HOH C 17 122 98 HOH HOH . S 3 HOH C 18 123 100 HOH HOH . S 3 HOH C 19 124 101 HOH HOH . S 3 HOH C 20 125 103 HOH HOH . S 3 HOH C 21 126 171 HOH HOH . S 3 HOH C 22 127 193 HOH HOH . S 3 HOH C 23 128 194 HOH HOH . S 3 HOH C 24 129 195 HOH HOH . S 3 HOH C 25 130 196 HOH HOH . S 3 HOH C 26 131 198 HOH HOH . S 3 HOH C 27 132 199 HOH HOH . S 3 HOH C 28 133 200 HOH HOH . S 3 HOH C 29 134 201 HOH HOH . S 3 HOH C 30 135 202 HOH HOH . S 3 HOH C 31 136 203 HOH HOH . S 3 HOH C 32 137 259 HOH HOH . S 3 HOH C 33 138 288 HOH HOH . S 3 HOH C 34 139 289 HOH HOH . S 3 HOH C 35 140 291 HOH HOH . S 3 HOH C 36 141 292 HOH HOH . T 3 HOH D 1 106 51 HOH HOH . T 3 HOH D 2 107 52 HOH HOH . T 3 HOH D 3 108 54 HOH HOH . T 3 HOH D 4 109 55 HOH HOH . T 3 HOH D 5 110 56 HOH HOH . T 3 HOH D 6 111 57 HOH HOH . T 3 HOH D 7 112 59 HOH HOH . T 3 HOH D 8 113 60 HOH HOH . T 3 HOH D 9 114 61 HOH HOH . T 3 HOH D 10 115 72 HOH HOH . T 3 HOH D 11 116 109 HOH HOH . T 3 HOH D 12 117 111 HOH HOH . T 3 HOH D 13 118 113 HOH HOH . T 3 HOH D 14 119 114 HOH HOH . T 3 HOH D 15 120 138 HOH HOH . T 3 HOH D 16 121 144 HOH HOH . T 3 HOH D 17 122 152 HOH HOH . T 3 HOH D 18 123 206 HOH HOH . T 3 HOH D 19 124 207 HOH HOH . T 3 HOH D 20 125 208 HOH HOH . T 3 HOH D 21 126 209 HOH HOH . T 3 HOH D 22 127 212 HOH HOH . T 3 HOH D 23 128 214 HOH HOH . T 3 HOH D 24 129 250 HOH HOH . T 3 HOH D 25 130 262 HOH HOH . T 3 HOH D 26 131 301 HOH HOH . T 3 HOH D 27 132 302 HOH HOH . U 3 HOH E 1 106 5 HOH HOH . U 3 HOH E 2 107 6 HOH HOH . U 3 HOH E 3 108 17 HOH HOH . U 3 HOH E 4 109 19 HOH HOH . U 3 HOH E 5 110 21 HOH HOH . U 3 HOH E 6 111 24 HOH HOH . U 3 HOH E 7 112 39 HOH HOH . U 3 HOH E 8 113 40 HOH HOH . U 3 HOH E 9 114 41 HOH HOH . U 3 HOH E 10 115 42 HOH HOH . U 3 HOH E 11 116 43 HOH HOH . U 3 HOH E 12 117 44 HOH HOH . U 3 HOH E 13 118 115 HOH HOH . U 3 HOH E 14 119 135 HOH HOH . U 3 HOH E 15 120 153 HOH HOH . U 3 HOH E 16 121 155 HOH HOH . U 3 HOH E 17 122 232 HOH HOH . U 3 HOH E 18 123 233 HOH HOH . U 3 HOH E 19 124 253 HOH HOH . U 3 HOH E 20 125 254 HOH HOH . U 3 HOH E 21 126 265 HOH HOH . U 3 HOH E 22 127 266 HOH HOH . U 3 HOH E 23 128 267 HOH HOH . U 3 HOH E 24 129 271 HOH HOH . U 3 HOH E 25 130 294 HOH HOH . U 3 HOH E 26 131 297 HOH HOH . U 3 HOH E 27 132 298 HOH HOH . U 3 HOH E 28 133 304 HOH HOH . V 3 HOH F 1 106 1 HOH HOH . V 3 HOH F 2 107 2 HOH HOH . V 3 HOH F 3 108 3 HOH HOH . V 3 HOH F 4 109 4 HOH HOH . V 3 HOH F 5 110 7 HOH HOH . V 3 HOH F 6 111 18 HOH HOH . V 3 HOH F 7 112 87 HOH HOH . V 3 HOH F 8 113 88 HOH HOH . V 3 HOH F 9 114 92 HOH HOH . V 3 HOH F 10 115 118 HOH HOH . V 3 HOH F 11 116 128 HOH HOH . V 3 HOH F 12 117 129 HOH HOH . V 3 HOH F 13 118 131 HOH HOH . V 3 HOH F 14 119 150 HOH HOH . V 3 HOH F 15 120 151 HOH HOH . V 3 HOH F 16 121 162 HOH HOH . V 3 HOH F 17 122 164 HOH HOH . V 3 HOH F 18 123 165 HOH HOH . V 3 HOH F 19 124 216 HOH HOH . V 3 HOH F 20 125 217 HOH HOH . V 3 HOH F 21 126 219 HOH HOH . V 3 HOH F 22 127 220 HOH HOH . V 3 HOH F 23 128 221 HOH HOH . V 3 HOH F 24 129 222 HOH HOH . V 3 HOH F 25 130 251 HOH HOH . V 3 HOH F 26 131 303 HOH HOH . V 3 HOH F 27 132 309 HOH HOH . W 3 HOH G 1 106 9 HOH HOH . W 3 HOH G 2 107 10 HOH HOH . W 3 HOH G 3 108 11 HOH HOH . W 3 HOH G 4 109 12 HOH HOH . W 3 HOH G 5 110 13 HOH HOH . W 3 HOH G 6 111 20 HOH HOH . W 3 HOH G 7 112 22 HOH HOH . W 3 HOH G 8 113 23 HOH HOH . W 3 HOH G 9 114 27 HOH HOH . W 3 HOH G 10 115 28 HOH HOH . W 3 HOH G 11 116 29 HOH HOH . W 3 HOH G 12 117 30 HOH HOH . W 3 HOH G 13 118 31 HOH HOH . W 3 HOH G 14 119 32 HOH HOH . W 3 HOH G 15 120 33 HOH HOH . W 3 HOH G 16 121 34 HOH HOH . W 3 HOH G 17 122 35 HOH HOH . W 3 HOH G 18 123 36 HOH HOH . W 3 HOH G 19 124 37 HOH HOH . W 3 HOH G 20 125 38 HOH HOH . W 3 HOH G 21 126 93 HOH HOH . W 3 HOH G 22 127 94 HOH HOH . W 3 HOH G 23 128 117 HOH HOH . W 3 HOH G 24 129 145 HOH HOH . W 3 HOH G 25 130 147 HOH HOH . W 3 HOH G 26 131 148 HOH HOH . W 3 HOH G 27 132 149 HOH HOH . W 3 HOH G 28 133 160 HOH HOH . W 3 HOH G 29 134 224 HOH HOH . W 3 HOH G 30 135 226 HOH HOH . W 3 HOH G 31 136 227 HOH HOH . W 3 HOH G 32 137 228 HOH HOH . W 3 HOH G 33 138 229 HOH HOH . W 3 HOH G 34 139 230 HOH HOH . W 3 HOH G 35 140 231 HOH HOH . W 3 HOH G 36 141 234 HOH HOH . W 3 HOH G 37 142 235 HOH HOH . W 3 HOH G 38 143 246 HOH HOH . W 3 HOH G 39 144 272 HOH HOH . W 3 HOH G 40 145 306 HOH HOH . W 3 HOH G 41 146 308 HOH HOH . X 3 HOH H 1 106 8 HOH HOH . X 3 HOH H 2 107 14 HOH HOH . X 3 HOH H 3 108 15 HOH HOH . X 3 HOH H 4 109 16 HOH HOH . X 3 HOH H 5 110 25 HOH HOH . X 3 HOH H 6 111 26 HOH HOH . X 3 HOH H 7 112 119 HOH HOH . X 3 HOH H 8 113 120 HOH HOH . X 3 HOH H 9 114 121 HOH HOH . X 3 HOH H 10 115 123 HOH HOH . X 3 HOH H 11 116 124 HOH HOH . X 3 HOH H 12 117 125 HOH HOH . X 3 HOH H 13 118 126 HOH HOH . X 3 HOH H 14 119 127 HOH HOH . X 3 HOH H 15 120 146 HOH HOH . X 3 HOH H 16 121 218 HOH HOH . X 3 HOH H 17 122 223 HOH HOH . X 3 HOH H 18 123 237 HOH HOH . X 3 HOH H 19 124 238 HOH HOH . X 3 HOH H 20 125 239 HOH HOH . X 3 HOH H 21 126 240 HOH HOH . X 3 HOH H 22 127 241 HOH HOH . X 3 HOH H 23 128 242 HOH HOH . X 3 HOH H 24 129 243 HOH HOH . X 3 HOH H 25 130 244 HOH HOH . X 3 HOH H 26 131 245 HOH HOH . X 3 HOH H 27 132 247 HOH HOH . X 3 HOH H 28 133 248 HOH HOH . X 3 HOH H 29 134 249 HOH HOH . X 3 HOH H 30 135 270 HOH HOH . X 3 HOH H 31 136 299 HOH HOH . X 3 HOH H 32 137 300 HOH HOH . X 3 HOH H 33 138 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HBI . . . P 2 29.207 60.575 81.82 1 49.85 ? N1 HBI 105 H 1 HETATM 2 N N2 HBI . . . P 2 28.62 60.651 84.003 1 28.46 ? N2 HBI 105 H 1 HETATM 3 C C2 HBI . . . P 2 29.24 61.286 82.94 1 44.14 ? C2 HBI 105 H 1 HETATM 4 N N3 HBI . . . P 2 29.846 62.473 83.136 1 42.88 ? N3 HBI 105 H 1 HETATM 5 C C4 HBI . . . P 2 30.511 63.021 82.127 1 41.04 ? C4 HBI 105 H 1 HETATM 6 O O4 HBI . . . P 2 31.159 64.185 82.43 1 22.47 ? O4 HBI 105 H 1 HETATM 7 C C4A HBI . . . P 2 30.554 62.352 80.859 1 63.52 ? C4A HBI 105 H 1 HETATM 8 C C8A HBI . . . P 2 29.846 61.082 80.77 1 55.54 ? C8A HBI 105 H 1 HETATM 9 N N8 HBI . . . P 2 29.846 60.324 79.528 1 54.48 ? N8 HBI 105 H 1 HETATM 10 C C7 HBI . . . P 2 30.392 61.036 78.3 1 58.63 ? C7 HBI 105 H 1 HETATM 11 C C6 HBI . . . P 2 31.248 62.324 78.543 1 67.28 ? C6 HBI 105 H 1 HETATM 12 N N5 HBI . . . P 2 31.246 62.893 79.715 1 71.07 ? N5 HBI 105 H 1 HETATM 13 C C9 HBI . . . P 2 32.051 62.978 77.39 1 79.59 ? C9 HBI 105 H 1 HETATM 14 O O9 HBI . . . P 2 31.526 64.279 76.974 1 77.52 ? O9 HBI 105 H 1 HETATM 15 C C10 HBI . . . P 2 33.621 62.988 77.593 1 92.02 ? C10 HBI 105 H 1 HETATM 16 O O10 HBI . . . P 2 34.027 61.598 77.754 1 78.79 ? O10 HBI 105 H 1 HETATM 17 C C11 HBI . . . P 2 34.238 63.867 76.486 1 100 ? C11 HBI 105 H 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #