data_1DCY # _model_server_result.job_id NLHtZ0gnvKYhPBTUHuJD8g _model_server_result.datetime_utc '2024-10-14 08:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1201}' # _entry.id 1DCY # _exptl.entry_id 1DCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.359 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-BENZYL-5-METHOXY-2-METHYL-1H-INDOL-3-YL)-ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DCY _cell.length_a 76.254 _cell.length_b 76.254 _cell.length_c 91.465 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 49 A CYS 49 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 A SG CYS 50 A CYS 50 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 A SG CYS 59 A CYS 59 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 77 A CYS 77 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 B CA CA . A CA 198 1_555 A O HIS 27 A HIS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 B CA CA . A CA 198 1_555 A OD1 ASP 48 A ASP 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 B CA CA . A CA 198 1_555 A O GLY 31 A GLY 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 B CA CA . A CA 198 1_555 A OD2 ASP 48 A ASP 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 B CA CA . A CA 198 1_555 D O14 I3N . A I3N 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc6 B CA CA . A CA 198 1_555 A O GLY 29 A GLY 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc7 C CA CA . A CA 199 1_555 A O TYR 112 A TYR 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc8 C CA CA . A CA 199 1_555 A O PHE 23 A PHE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc9 C CA CA . A CA 199 1_555 A OD1 ASN 114 A ASN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc10 C CA CA . A CA 199 1_555 A O GLY 25 A GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc11 C CA CA . A CA 199 1_555 E O HOH . A HOH 210 12_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'C19 H19 N O3' _chem_comp.formula_weight 309.359 _chem_comp.id I3N _chem_comp.mon_nstd_flag . _chem_comp.name '1-BENZYL-5-METHOXY-2-METHYL-1H-INDOL-3-YL)-ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DCY _atom_sites.fract_transf_matrix[1][1] 0.013114 _atom_sites.fract_transf_matrix[1][2] 0.007571 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 198 198 CA MCA . C 2 CA A 1 199 199 CA MCA . D 3 I3N A 1 1201 201 I3N I3N . E 4 HOH A 1 201 201 HOH HOH . E 4 HOH A 2 202 202 HOH HOH . E 4 HOH A 3 203 203 HOH HOH . E 4 HOH A 4 204 204 HOH HOH . E 4 HOH A 5 205 205 HOH HOH . E 4 HOH A 6 206 206 HOH HOH . E 4 HOH A 7 207 207 HOH HOH . E 4 HOH A 8 208 208 HOH HOH . E 4 HOH A 9 209 209 HOH HOH . E 4 HOH A 10 210 210 HOH HOH . E 4 HOH A 11 211 211 HOH HOH . E 4 HOH A 12 212 212 HOH HOH . E 4 HOH A 13 214 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3N . . . D 3 58.97 25.712 45.657 1 27.85 ? C1 I3N 1201 A 1 HETATM 2 O O2 I3N . . . D 3 59.37 26.472 46.817 1 18.99 ? O2 I3N 1201 A 1 HETATM 3 C C3 I3N . . . D 3 59.388 27.875 46.909 1 18.52 ? C3 I3N 1201 A 1 HETATM 4 C C4 I3N . . . D 3 58.908 28.726 45.883 1 17.53 ? C4 I3N 1201 A 1 HETATM 5 C C5 I3N . . . D 3 58.927 30.146 45.966 1 18.51 ? C5 I3N 1201 A 1 HETATM 6 C C6 I3N . . . D 3 59.458 30.77 47.128 1 17.21 ? C6 I3N 1201 A 1 HETATM 7 C C7 I3N . . . D 3 59.952 29.918 48.175 1 16.81 ? C7 I3N 1201 A 1 HETATM 8 C C8 I3N . . . D 3 59.925 28.496 48.072 1 19.31 ? C8 I3N 1201 A 1 HETATM 9 N N9 I3N . . . D 3 59.366 32.14 46.973 1 19.34 ? N9 I3N 1201 A 1 HETATM 10 C C10 I3N . . . D 3 58.788 32.336 45.723 1 16.79 ? C10 I3N 1201 A 1 HETATM 11 C C11 I3N . . . D 3 58.511 31.124 45.072 1 17.67 ? C11 I3N 1201 A 1 HETATM 12 C C12 I3N . . . D 3 57.862 30.956 43.676 1 21.54 ? C12 I3N 1201 A 1 HETATM 13 C C13 I3N . . . D 3 56.773 29.886 43.55 1 22.01 ? C13 I3N 1201 A 1 HETATM 14 O O14 I3N . . . D 3 55.743 29.847 44.265 1 22.21 ? O14 I3N 1201 A 1 HETATM 15 O O15 I3N . . . D 3 57.041 29.02 42.695 1 26.21 ? O15 I3N 1201 A 1 HETATM 16 C C16 I3N . . . D 3 58.477 33.71 45.091 1 17.7 ? C16 I3N 1201 A 1 HETATM 17 C C17 I3N . . . D 3 59.833 33.175 47.987 1 19.42 ? C17 I3N 1201 A 1 HETATM 18 C C18 I3N . . . D 3 61.399 33.255 48.214 1 21.66 ? C18 I3N 1201 A 1 HETATM 19 C C19 I3N . . . D 3 62.309 33.012 47.158 1 21.6 ? C19 I3N 1201 A 1 HETATM 20 C C20 I3N . . . D 3 63.691 33.077 47.357 1 27.64 ? C20 I3N 1201 A 1 HETATM 21 C C21 I3N . . . D 3 64.206 33.386 48.618 1 24.29 ? C21 I3N 1201 A 1 HETATM 22 C C22 I3N . . . D 3 63.347 33.631 49.676 1 24.05 ? C22 I3N 1201 A 1 HETATM 23 C C23 I3N . . . D 3 61.96 33.564 49.469 1 24.76 ? C23 I3N 1201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #