data_1DDO
#
_model_server_result.job_id            nuhXaWbYV95bf3ZnPJieVg 
_model_server_result.datetime_utc      '2024-11-27 18:03:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ddo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":349}' 
#
_entry.id    1DDO 
#
_exptl.entry_id    1DDO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              202.209 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMINO-TRYPTOPHAN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DDO 
_cell.length_a            325.2 
_cell.length_b            137.1 
_cell.length_c            196.8 
_cell.Z_PDB               64 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA tetrameric 4 software_defined_assembly 5 
PISA tetrameric 4 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,J,Q,R,S,AA,EA 1 1 
B,F,K,L,T,U,V,BA,FA 2 1 
C,G,M,N,W,X,CA,GA 3 1 
D,H,O,P,Y,Z,DA,HA 4 1 
C,D,G,H,M,N,O,P,W,X,Y,Z,CA,DA,GA,HA 5 1 
A,B,E,F,I,J,K,L,Q,R,S,T,U,V,AA,BA,EA,FA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 U N N 
? 3 X N N 
? 3 Z N N 
#
_chem_comp.formula           'C11 H10 N2 O2' 
_chem_comp.formula_weight    202.209 
_chem_comp.id                ITR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMINO-TRYPTOPHAN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ITR doub 292 n n 
N HN ITR sing 293 n n 
CA CB ITR sing 294 n n 
CA C ITR sing 295 n n 
CB CG ITR sing 296 n n 
CB HB1 ITR sing 297 n n 
CB HB2 ITR sing 298 n n 
CG CD1 ITR doub 299 n y 
CG CD2 ITR sing 300 n y 
CD1 NE1 ITR sing 301 n y 
CD1 HD1 ITR sing 302 n n 
NE1 CE2 ITR sing 303 n y 
NE1 HE1 ITR sing 304 n n 
CE2 CZ2 ITR doub 305 n y 
CE2 CD2 ITR sing 306 n y 
CZ2 CH2 ITR sing 307 n y 
CZ2 HZ2 ITR sing 308 n n 
CH2 CZ3 ITR doub 309 n y 
CH2 HH2 ITR sing 310 n n 
CZ3 CE3 ITR sing 311 n y 
CZ3 HZ3 ITR sing 312 n n 
CE3 CD2 ITR doub 313 n y 
CE3 HE3 ITR sing 314 n n 
C O ITR doub 315 n n 
C OXT ITR sing 316 n n 
OXT HXT ITR sing 317 n n 
#
_atom_sites.entry_id                     1DDO 
_atom_sites.fract_transf_matrix[1][1]    0.003075 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007294 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FAD A 1 348 340 FAD FAD . 
J 3 ITR A 1 349 341 ITR ITR . 
K 2 FAD B 1 348 340 FAD FAD . 
L 3 ITR B 1 349 341 ITR ITR . 
M 2 FAD C 1 348 340 FAD FAD . 
N 3 ITR C 1 349 341 ITR ITR . 
O 2 FAD D 1 348 340 FAD FAD . 
P 3 ITR D 1 349 341 ITR ITR . 
Q 2 FAD E 1 348 340 FAD FAD . 
R 3 ITR E 1 349 341 ITR ITR . 
S 4 DTR E 1 350 342 DTR DTR . 
T 2 FAD F 1 348 340 FAD FAD . 
U 3 ITR F 1 349 341 ITR ITR . 
V 4 DTR F 1 350 343 DTR DTR . 
W 2 FAD G 1 348 340 FAD FAD . 
X 3 ITR G 1 349 341 ITR ITR . 
Y 2 FAD H 1 348 340 FAD FAD . 
Z 3 ITR H 1 349 341 ITR ITR . 
AA 5 HOH A 1 350 1 HOH HOH . 
AA 5 HOH A 2 351 2 HOH HOH . 
AA 5 HOH A 3 352 3 HOH HOH . 
AA 5 HOH A 4 353 4 HOH HOH . 
AA 5 HOH A 5 354 6 HOH HOH . 
AA 5 HOH A 6 355 7 HOH HOH . 
AA 5 HOH A 7 356 8 HOH HOH . 
AA 5 HOH A 8 357 9 HOH HOH . 
AA 5 HOH A 9 358 11 HOH HOH . 
AA 5 HOH A 10 359 12 HOH HOH . 
AA 5 HOH A 11 360 13 HOH HOH . 
AA 5 HOH A 12 361 14 HOH HOH . 
AA 5 HOH A 13 362 15 HOH HOH . 
AA 5 HOH A 14 363 17 HOH HOH . 
AA 5 HOH A 15 364 18 HOH HOH . 
AA 5 HOH A 16 365 19 HOH HOH . 
AA 5 HOH A 17 366 92 HOH HOH . 
BA 5 HOH B 1 350 20 HOH HOH . 
BA 5 HOH B 2 351 21 HOH HOH . 
BA 5 HOH B 3 352 22 HOH HOH . 
BA 5 HOH B 4 353 23 HOH HOH . 
BA 5 HOH B 5 354 25 HOH HOH . 
BA 5 HOH B 6 355 26 HOH HOH . 
BA 5 HOH B 7 356 30 HOH HOH . 
CA 5 HOH C 1 350 24 HOH HOH . 
CA 5 HOH C 2 351 27 HOH HOH . 
CA 5 HOH C 3 352 28 HOH HOH . 
CA 5 HOH C 4 353 29 HOH HOH . 
CA 5 HOH C 5 354 31 HOH HOH . 
CA 5 HOH C 6 355 32 HOH HOH . 
CA 5 HOH C 7 356 33 HOH HOH . 
CA 5 HOH C 8 357 34 HOH HOH . 
CA 5 HOH C 9 358 35 HOH HOH . 
CA 5 HOH C 10 359 36 HOH HOH . 
CA 5 HOH C 11 360 37 HOH HOH . 
CA 5 HOH C 12 361 38 HOH HOH . 
DA 5 HOH D 1 350 39 HOH HOH . 
DA 5 HOH D 2 351 40 HOH HOH . 
DA 5 HOH D 3 352 41 HOH HOH . 
DA 5 HOH D 4 353 42 HOH HOH . 
DA 5 HOH D 5 354 43 HOH HOH . 
DA 5 HOH D 6 355 44 HOH HOH . 
DA 5 HOH D 7 356 45 HOH HOH . 
DA 5 HOH D 8 357 46 HOH HOH . 
DA 5 HOH D 9 358 48 HOH HOH . 
DA 5 HOH D 10 359 49 HOH HOH . 
DA 5 HOH D 11 360 50 HOH HOH . 
DA 5 HOH D 12 361 51 HOH HOH . 
DA 5 HOH D 13 362 52 HOH HOH . 
DA 5 HOH D 14 363 53 HOH HOH . 
DA 5 HOH D 15 364 54 HOH HOH . 
DA 5 HOH D 16 365 55 HOH HOH . 
DA 5 HOH D 17 366 57 HOH HOH . 
DA 5 HOH D 18 367 58 HOH HOH . 
DA 5 HOH D 19 368 60 HOH HOH . 
DA 5 HOH D 20 369 106 HOH HOH . 
DA 5 HOH D 21 370 107 HOH HOH . 
EA 5 HOH E 1 351 47 HOH HOH . 
EA 5 HOH E 2 352 61 HOH HOH . 
EA 5 HOH E 3 353 62 HOH HOH . 
EA 5 HOH E 4 354 63 HOH HOH . 
EA 5 HOH E 5 355 64 HOH HOH . 
EA 5 HOH E 6 356 65 HOH HOH . 
EA 5 HOH E 7 357 66 HOH HOH . 
EA 5 HOH E 8 358 67 HOH HOH . 
EA 5 HOH E 9 359 68 HOH HOH . 
EA 5 HOH E 10 360 69 HOH HOH . 
EA 5 HOH E 11 361 70 HOH HOH . 
EA 5 HOH E 12 362 71 HOH HOH . 
EA 5 HOH E 13 363 72 HOH HOH . 
EA 5 HOH E 14 364 73 HOH HOH . 
EA 5 HOH E 15 365 74 HOH HOH . 
EA 5 HOH E 16 366 75 HOH HOH . 
FA 5 HOH F 1 351 5 HOH HOH . 
FA 5 HOH F 2 352 10 HOH HOH . 
FA 5 HOH F 3 353 16 HOH HOH . 
FA 5 HOH F 4 354 56 HOH HOH . 
FA 5 HOH F 5 355 76 HOH HOH . 
FA 5 HOH F 6 356 77 HOH HOH . 
FA 5 HOH F 7 357 78 HOH HOH . 
FA 5 HOH F 8 358 79 HOH HOH . 
FA 5 HOH F 9 359 80 HOH HOH . 
FA 5 HOH F 10 360 81 HOH HOH . 
FA 5 HOH F 11 361 82 HOH HOH . 
FA 5 HOH F 12 362 83 HOH HOH . 
FA 5 HOH F 13 363 84 HOH HOH . 
FA 5 HOH F 14 364 85 HOH HOH . 
FA 5 HOH F 15 365 86 HOH HOH . 
FA 5 HOH F 16 366 87 HOH HOH . 
FA 5 HOH F 17 367 88 HOH HOH . 
FA 5 HOH F 18 368 89 HOH HOH . 
FA 5 HOH F 19 369 90 HOH HOH . 
FA 5 HOH F 20 370 91 HOH HOH . 
FA 5 HOH F 21 371 93 HOH HOH . 
GA 5 HOH G 1 350 59 HOH HOH . 
GA 5 HOH G 2 351 94 HOH HOH . 
GA 5 HOH G 3 352 95 HOH HOH . 
HA 5 HOH H 1 350 96 HOH HOH . 
HA 5 HOH H 2 351 97 HOH HOH . 
HA 5 HOH H 3 352 98 HOH HOH . 
HA 5 HOH H 4 353 99 HOH HOH . 
HA 5 HOH H 5 354 100 HOH HOH . 
HA 5 HOH H 6 355 101 HOH HOH . 
HA 5 HOH H 7 356 102 HOH HOH . 
HA 5 HOH H 8 357 103 HOH HOH . 
HA 5 HOH H 9 358 104 HOH HOH . 
HA 5 HOH H 10 359 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ITR . . . L 3 92.156 46.752 62.934 1 45.48 ? N ITR 349 B 1 
HETATM 2 C CA ITR . . . L 3 91.961 46.571 61.64 1 48.47 ? CA ITR 349 B 1 
HETATM 3 C CB ITR . . . L 3 92.865 45.64 60.895 1 50.09 ? CB ITR 349 B 1 
HETATM 4 C CG ITR . . . L 3 94.139 46.36 60.627 1 52.86 ? CG ITR 349 B 1 
HETATM 5 C CD1 ITR . . . L 3 94.62 46.811 59.426 1 55.83 ? CD1 ITR 349 B 1 
HETATM 6 N NE1 ITR . . . L 3 95.822 47.443 59.619 1 54.69 ? NE1 ITR 349 B 1 
HETATM 7 C CE2 ITR . . . L 3 96.136 47.4 60.952 1 54.5 ? CE2 ITR 349 B 1 
HETATM 8 C CZ2 ITR . . . L 3 97.253 47.887 61.631 1 55.31 ? CZ2 ITR 349 B 1 
HETATM 9 C CH2 ITR . . . L 3 97.314 47.706 62.991 1 58.03 ? CH2 ITR 349 B 1 
HETATM 10 C CZ3 ITR . . . L 3 96.276 47.078 63.677 1 57.95 ? CZ3 ITR 349 B 1 
HETATM 11 C CE3 ITR . . . L 3 95.137 46.614 63.002 1 55.58 ? CE3 ITR 349 B 1 
HETATM 12 C CD2 ITR . . . L 3 95.079 46.764 61.614 1 52.38 ? CD2 ITR 349 B 1 
HETATM 13 C C ITR . . . L 3 91.017 47.442 60.866 1 49.55 ? C ITR 349 B 1 
HETATM 14 O O ITR . . . L 3 90.574 48.458 61.446 1 50.86 ? O ITR 349 B 1 
HETATM 15 O OXT ITR . . . L 3 90.766 47.11 59.69 1 72.53 ? OXT ITR 349 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           15 
#