data_1DEK # _model_server_result.job_id LGgHVC5h02DGaagSVDsM4Q _model_server_result.datetime_utc '2024-11-22 08:56:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1DEK # _exptl.entry_id 1DEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.1 _cell.angle_gamma 90 _cell.entry_id 1DEK _cell.length_a 155.2 _cell.length_b 58.5 _cell.length_c 75.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 54 A PRO 54 1_555 A N OCS 55 A OCS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C OCS 55 A OCS 55 1_555 A N LEU 56 A LEU 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale3 B C PRO 54 B PRO 54 1_555 B N OCS 55 B OCS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C OCS 55 B OCS 55 1_555 B N LEU 56 B LEU 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OE1 GLU 108 A GLU 108 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc2 B OH TYR 42 B TYR 42 1_555 E MG MG . B MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 B OE2 GLU 108 B GLU 108 1_555 E MG MG . B MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DEK _atom_sites.fract_transf_matrix[1][1] 0.006443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 300 300 MG MG . D 3 DGP A 1 301 301 DGP DGP . E 2 MG B 1 300 300 MG MG . F 3 DGP B 1 301 301 DGP DGP . G 4 HOH A 1 302 1 HOH HOH . G 4 HOH A 2 303 2 HOH HOH . G 4 HOH A 3 304 3 HOH HOH . G 4 HOH A 4 305 4 HOH HOH . G 4 HOH A 5 306 8 HOH HOH . G 4 HOH A 6 307 10 HOH HOH . G 4 HOH A 7 308 14 HOH HOH . G 4 HOH A 8 309 15 HOH HOH . G 4 HOH A 9 310 17 HOH HOH . G 4 HOH A 10 311 18 HOH HOH . G 4 HOH A 11 312 20 HOH HOH . G 4 HOH A 12 313 21 HOH HOH . G 4 HOH A 13 314 24 HOH HOH . G 4 HOH A 14 315 25 HOH HOH . G 4 HOH A 15 316 26 HOH HOH . G 4 HOH A 16 317 28 HOH HOH . G 4 HOH A 17 318 29 HOH HOH . G 4 HOH A 18 319 31 HOH HOH . G 4 HOH A 19 320 32 HOH HOH . G 4 HOH A 20 321 33 HOH HOH . G 4 HOH A 21 322 34 HOH HOH . G 4 HOH A 22 323 36 HOH HOH . G 4 HOH A 23 324 37 HOH HOH . G 4 HOH A 24 325 39 HOH HOH . G 4 HOH A 25 326 40 HOH HOH . G 4 HOH A 26 327 41 HOH HOH . G 4 HOH A 27 328 42 HOH HOH . G 4 HOH A 28 329 43 HOH HOH . G 4 HOH A 29 330 46 HOH HOH . G 4 HOH A 30 331 48 HOH HOH . G 4 HOH A 31 332 50 HOH HOH . G 4 HOH A 32 333 52 HOH HOH . G 4 HOH A 33 334 53 HOH HOH . G 4 HOH A 34 335 55 HOH HOH . G 4 HOH A 35 336 57 HOH HOH . G 4 HOH A 36 337 60 HOH HOH . G 4 HOH A 37 338 61 HOH HOH . G 4 HOH A 38 339 63 HOH HOH . G 4 HOH A 39 340 64 HOH HOH . G 4 HOH A 40 341 66 HOH HOH . G 4 HOH A 41 342 67 HOH HOH . G 4 HOH A 42 343 69 HOH HOH . G 4 HOH A 43 344 71 HOH HOH . G 4 HOH A 44 345 72 HOH HOH . G 4 HOH A 45 346 73 HOH HOH . G 4 HOH A 46 347 74 HOH HOH . G 4 HOH A 47 348 76 HOH HOH . G 4 HOH A 48 349 78 HOH HOH . G 4 HOH A 49 350 79 HOH HOH . G 4 HOH A 50 351 83 HOH HOH . G 4 HOH A 51 352 85 HOH HOH . G 4 HOH A 52 353 86 HOH HOH . G 4 HOH A 53 354 90 HOH HOH . G 4 HOH A 54 355 91 HOH HOH . G 4 HOH A 55 356 92 HOH HOH . G 4 HOH A 56 357 94 HOH HOH . G 4 HOH A 57 358 95 HOH HOH . G 4 HOH A 58 359 98 HOH HOH . G 4 HOH A 59 360 100 HOH HOH . G 4 HOH A 60 361 103 HOH HOH . G 4 HOH A 61 362 105 HOH HOH . G 4 HOH A 62 363 106 HOH HOH . G 4 HOH A 63 364 107 HOH HOH . G 4 HOH A 64 365 109 HOH HOH . G 4 HOH A 65 366 112 HOH HOH . G 4 HOH A 66 367 114 HOH HOH . G 4 HOH A 67 368 115 HOH HOH . G 4 HOH A 68 369 116 HOH HOH . G 4 HOH A 69 370 117 HOH HOH . G 4 HOH A 70 371 118 HOH HOH . G 4 HOH A 71 372 121 HOH HOH . G 4 HOH A 72 373 122 HOH HOH . G 4 HOH A 73 374 125 HOH HOH . G 4 HOH A 74 375 129 HOH HOH . G 4 HOH A 75 376 130 HOH HOH . G 4 HOH A 76 377 132 HOH HOH . G 4 HOH A 77 378 134 HOH HOH . G 4 HOH A 78 379 135 HOH HOH . G 4 HOH A 79 380 136 HOH HOH . G 4 HOH A 80 381 138 HOH HOH . G 4 HOH A 81 382 139 HOH HOH . G 4 HOH A 82 383 140 HOH HOH . G 4 HOH A 83 384 141 HOH HOH . G 4 HOH A 84 385 144 HOH HOH . G 4 HOH A 85 386 145 HOH HOH . G 4 HOH A 86 387 146 HOH HOH . G 4 HOH A 87 388 147 HOH HOH . G 4 HOH A 88 389 148 HOH HOH . G 4 HOH A 89 390 154 HOH HOH . G 4 HOH A 90 391 155 HOH HOH . G 4 HOH A 91 392 156 HOH HOH . G 4 HOH A 92 393 158 HOH HOH . G 4 HOH A 93 394 159 HOH HOH . G 4 HOH A 94 395 160 HOH HOH . G 4 HOH A 95 396 161 HOH HOH . G 4 HOH A 96 397 164 HOH HOH . G 4 HOH A 97 398 166 HOH HOH . G 4 HOH A 98 399 168 HOH HOH . G 4 HOH A 99 400 169 HOH HOH . G 4 HOH A 100 401 170 HOH HOH . G 4 HOH A 101 402 172 HOH HOH . G 4 HOH A 102 403 176 HOH HOH . G 4 HOH A 103 404 177 HOH HOH . G 4 HOH A 104 405 180 HOH HOH . G 4 HOH A 105 406 181 HOH HOH . G 4 HOH A 106 407 183 HOH HOH . G 4 HOH A 107 408 184 HOH HOH . G 4 HOH A 108 409 187 HOH HOH . G 4 HOH A 109 410 188 HOH HOH . G 4 HOH A 110 411 189 HOH HOH . G 4 HOH A 111 412 190 HOH HOH . G 4 HOH A 112 413 193 HOH HOH . G 4 HOH A 113 414 196 HOH HOH . G 4 HOH A 114 415 199 HOH HOH . G 4 HOH A 115 416 200 HOH HOH . G 4 HOH A 116 417 201 HOH HOH . G 4 HOH A 117 418 202 HOH HOH . G 4 HOH A 118 419 204 HOH HOH . G 4 HOH A 119 420 205 HOH HOH . G 4 HOH A 120 421 206 HOH HOH . G 4 HOH A 121 422 207 HOH HOH . G 4 HOH A 122 423 208 HOH HOH . G 4 HOH A 123 424 214 HOH HOH . G 4 HOH A 124 425 215 HOH HOH . G 4 HOH A 125 426 217 HOH HOH . G 4 HOH A 126 427 219 HOH HOH . G 4 HOH A 127 428 221 HOH HOH . G 4 HOH A 128 429 222 HOH HOH . G 4 HOH A 129 430 223 HOH HOH . G 4 HOH A 130 431 224 HOH HOH . G 4 HOH A 131 432 225 HOH HOH . G 4 HOH A 132 433 226 HOH HOH . G 4 HOH A 133 434 228 HOH HOH . G 4 HOH A 134 435 229 HOH HOH . G 4 HOH A 135 436 230 HOH HOH . G 4 HOH A 136 437 231 HOH HOH . G 4 HOH A 137 438 232 HOH HOH . G 4 HOH A 138 439 233 HOH HOH . G 4 HOH A 139 440 235 HOH HOH . G 4 HOH A 140 441 236 HOH HOH . G 4 HOH A 141 442 240 HOH HOH . G 4 HOH A 142 443 242 HOH HOH . G 4 HOH A 143 444 243 HOH HOH . G 4 HOH A 144 445 247 HOH HOH . G 4 HOH A 145 446 248 HOH HOH . G 4 HOH A 146 447 249 HOH HOH . G 4 HOH A 147 448 250 HOH HOH . G 4 HOH A 148 449 253 HOH HOH . G 4 HOH A 149 450 254 HOH HOH . G 4 HOH A 150 451 255 HOH HOH . G 4 HOH A 151 452 258 HOH HOH . G 4 HOH A 152 453 260 HOH HOH . G 4 HOH A 153 454 263 HOH HOH . G 4 HOH A 154 455 264 HOH HOH . G 4 HOH A 155 456 268 HOH HOH . G 4 HOH A 156 457 270 HOH HOH . G 4 HOH A 157 458 272 HOH HOH . G 4 HOH A 158 459 274 HOH HOH . G 4 HOH A 159 460 275 HOH HOH . G 4 HOH A 160 461 276 HOH HOH . G 4 HOH A 161 462 277 HOH HOH . G 4 HOH A 162 463 278 HOH HOH . G 4 HOH A 163 464 280 HOH HOH . G 4 HOH A 164 465 283 HOH HOH . G 4 HOH A 165 466 284 HOH HOH . G 4 HOH A 166 467 285 HOH HOH . G 4 HOH A 167 468 287 HOH HOH . G 4 HOH A 168 469 289 HOH HOH . H 4 HOH B 1 302 5 HOH HOH . H 4 HOH B 2 303 6 HOH HOH . H 4 HOH B 3 304 7 HOH HOH . H 4 HOH B 4 305 9 HOH HOH . H 4 HOH B 5 306 11 HOH HOH . H 4 HOH B 6 307 12 HOH HOH . H 4 HOH B 7 308 13 HOH HOH . H 4 HOH B 8 309 16 HOH HOH . H 4 HOH B 9 310 19 HOH HOH . H 4 HOH B 10 311 22 HOH HOH . H 4 HOH B 11 312 23 HOH HOH . H 4 HOH B 12 313 27 HOH HOH . H 4 HOH B 13 314 30 HOH HOH . H 4 HOH B 14 315 35 HOH HOH . H 4 HOH B 15 316 38 HOH HOH . H 4 HOH B 16 317 45 HOH HOH . H 4 HOH B 17 318 47 HOH HOH . H 4 HOH B 18 319 49 HOH HOH . H 4 HOH B 19 320 51 HOH HOH . H 4 HOH B 20 321 54 HOH HOH . H 4 HOH B 21 322 56 HOH HOH . H 4 HOH B 22 323 58 HOH HOH . H 4 HOH B 23 324 59 HOH HOH . H 4 HOH B 24 325 62 HOH HOH . H 4 HOH B 25 326 65 HOH HOH . H 4 HOH B 26 327 68 HOH HOH . H 4 HOH B 27 328 70 HOH HOH . H 4 HOH B 28 329 75 HOH HOH . H 4 HOH B 29 330 77 HOH HOH . H 4 HOH B 30 331 80 HOH HOH . H 4 HOH B 31 332 81 HOH HOH . H 4 HOH B 32 333 82 HOH HOH . H 4 HOH B 33 334 84 HOH HOH . H 4 HOH B 34 335 87 HOH HOH . H 4 HOH B 35 336 88 HOH HOH . H 4 HOH B 36 337 89 HOH HOH . H 4 HOH B 37 338 93 HOH HOH . H 4 HOH B 38 339 96 HOH HOH . H 4 HOH B 39 340 97 HOH HOH . H 4 HOH B 40 341 99 HOH HOH . H 4 HOH B 41 342 102 HOH HOH . H 4 HOH B 42 343 104 HOH HOH . H 4 HOH B 43 344 108 HOH HOH . H 4 HOH B 44 345 110 HOH HOH . H 4 HOH B 45 346 111 HOH HOH . H 4 HOH B 46 347 113 HOH HOH . H 4 HOH B 47 348 119 HOH HOH . H 4 HOH B 48 349 120 HOH HOH . H 4 HOH B 49 350 123 HOH HOH . H 4 HOH B 50 351 124 HOH HOH . H 4 HOH B 51 352 126 HOH HOH . H 4 HOH B 52 353 127 HOH HOH . H 4 HOH B 53 354 128 HOH HOH . H 4 HOH B 54 355 131 HOH HOH . H 4 HOH B 55 356 133 HOH HOH . H 4 HOH B 56 357 137 HOH HOH . H 4 HOH B 57 358 142 HOH HOH . H 4 HOH B 58 359 143 HOH HOH . H 4 HOH B 59 360 149 HOH HOH . H 4 HOH B 60 361 150 HOH HOH . H 4 HOH B 61 362 151 HOH HOH . H 4 HOH B 62 363 152 HOH HOH . H 4 HOH B 63 364 153 HOH HOH . H 4 HOH B 64 365 157 HOH HOH . H 4 HOH B 65 366 162 HOH HOH . H 4 HOH B 66 367 163 HOH HOH . H 4 HOH B 67 368 165 HOH HOH . H 4 HOH B 68 369 167 HOH HOH . H 4 HOH B 69 370 171 HOH HOH . H 4 HOH B 70 371 173 HOH HOH . H 4 HOH B 71 372 174 HOH HOH . H 4 HOH B 72 373 175 HOH HOH . H 4 HOH B 73 374 178 HOH HOH . H 4 HOH B 74 375 179 HOH HOH . H 4 HOH B 75 376 182 HOH HOH . H 4 HOH B 76 377 185 HOH HOH . H 4 HOH B 77 378 186 HOH HOH . H 4 HOH B 78 379 191 HOH HOH . H 4 HOH B 79 380 192 HOH HOH . H 4 HOH B 80 381 194 HOH HOH . H 4 HOH B 81 382 195 HOH HOH . H 4 HOH B 82 383 197 HOH HOH . H 4 HOH B 83 384 198 HOH HOH . H 4 HOH B 84 385 203 HOH HOH . H 4 HOH B 85 386 209 HOH HOH . H 4 HOH B 86 387 210 HOH HOH . H 4 HOH B 87 388 211 HOH HOH . H 4 HOH B 88 389 212 HOH HOH . H 4 HOH B 89 390 213 HOH HOH . H 4 HOH B 90 391 216 HOH HOH . H 4 HOH B 91 392 218 HOH HOH . H 4 HOH B 92 393 220 HOH HOH . H 4 HOH B 93 394 227 HOH HOH . H 4 HOH B 94 395 234 HOH HOH . H 4 HOH B 95 396 237 HOH HOH . H 4 HOH B 96 397 238 HOH HOH . H 4 HOH B 97 398 239 HOH HOH . H 4 HOH B 98 399 241 HOH HOH . H 4 HOH B 99 400 244 HOH HOH . H 4 HOH B 100 401 245 HOH HOH . H 4 HOH B 101 402 246 HOH HOH . H 4 HOH B 102 403 251 HOH HOH . H 4 HOH B 103 404 252 HOH HOH . H 4 HOH B 104 405 256 HOH HOH . H 4 HOH B 105 406 257 HOH HOH . H 4 HOH B 106 407 259 HOH HOH . H 4 HOH B 107 408 261 HOH HOH . H 4 HOH B 108 409 262 HOH HOH . H 4 HOH B 109 410 265 HOH HOH . H 4 HOH B 110 411 266 HOH HOH . H 4 HOH B 111 412 267 HOH HOH . H 4 HOH B 112 413 269 HOH HOH . H 4 HOH B 113 414 271 HOH HOH . H 4 HOH B 114 415 273 HOH HOH . H 4 HOH B 115 416 279 HOH HOH . H 4 HOH B 116 417 281 HOH HOH . H 4 HOH B 117 418 282 HOH HOH . H 4 HOH B 118 419 286 HOH HOH . H 4 HOH B 119 420 288 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 55.57 _atom_site.Cartn_y 24.169 _atom_site.Cartn_z -0.264 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #