data_1DEL # _model_server_result.job_id SSbFfniC-sJbk5zXgdOl9A _model_server_result.datetime_utc '2024-11-22 15:30:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1del # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1DEL # _exptl.entry_id 1DEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.1 _cell.angle_gamma 90 _cell.entry_id 1DEL _cell.length_a 155.2 _cell.length_b 58.5 _cell.length_c 75.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 42 A TYR 42 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A OE1 GLN 85 A GLN 85 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 A OE1 GLU 108 A GLU 108 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc4 B OH TYR 42 B TYR 42 1_555 E MG MG . B MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 B OE1 GLN 85 B GLN 85 1_555 E MG MG . B MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc6 B OE2 GLU 108 B GLU 108 1_555 E MG MG . B MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DEL _atom_sites.fract_transf_matrix[1][1] 0.006443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 300 300 MG MG . D 3 DGP A 1 301 301 DGP DGP . E 2 MG B 1 300 300 MG MG . F 3 DGP B 1 301 301 DGP DGP . G 4 AMP B 1 302 302 AMP AMP . H 5 HOH A 1 302 2 HOH HOH . H 5 HOH A 2 303 5 HOH HOH . H 5 HOH A 3 304 8 HOH HOH . H 5 HOH A 4 305 9 HOH HOH . H 5 HOH A 5 306 10 HOH HOH . H 5 HOH A 6 307 11 HOH HOH . H 5 HOH A 7 308 12 HOH HOH . H 5 HOH A 8 309 13 HOH HOH . H 5 HOH A 9 310 14 HOH HOH . H 5 HOH A 10 311 17 HOH HOH . H 5 HOH A 11 312 22 HOH HOH . H 5 HOH A 12 313 23 HOH HOH . H 5 HOH A 13 314 24 HOH HOH . H 5 HOH A 14 315 25 HOH HOH . H 5 HOH A 15 316 27 HOH HOH . H 5 HOH A 16 317 29 HOH HOH . H 5 HOH A 17 318 30 HOH HOH . H 5 HOH A 18 319 31 HOH HOH . H 5 HOH A 19 320 33 HOH HOH . H 5 HOH A 20 321 35 HOH HOH . H 5 HOH A 21 322 36 HOH HOH . H 5 HOH A 22 323 38 HOH HOH . H 5 HOH A 23 324 39 HOH HOH . H 5 HOH A 24 325 42 HOH HOH . H 5 HOH A 25 326 43 HOH HOH . H 5 HOH A 26 327 47 HOH HOH . H 5 HOH A 27 328 50 HOH HOH . H 5 HOH A 28 329 51 HOH HOH . H 5 HOH A 29 330 54 HOH HOH . H 5 HOH A 30 331 56 HOH HOH . H 5 HOH A 31 332 59 HOH HOH . H 5 HOH A 32 333 60 HOH HOH . H 5 HOH A 33 334 61 HOH HOH . H 5 HOH A 34 335 63 HOH HOH . H 5 HOH A 35 336 64 HOH HOH . H 5 HOH A 36 337 67 HOH HOH . H 5 HOH A 37 338 70 HOH HOH . H 5 HOH A 38 339 71 HOH HOH . H 5 HOH A 39 340 73 HOH HOH . H 5 HOH A 40 341 75 HOH HOH . H 5 HOH A 41 342 78 HOH HOH . H 5 HOH A 42 343 79 HOH HOH . H 5 HOH A 43 344 80 HOH HOH . H 5 HOH A 44 345 81 HOH HOH . H 5 HOH A 45 346 84 HOH HOH . H 5 HOH A 46 347 85 HOH HOH . H 5 HOH A 47 348 86 HOH HOH . H 5 HOH A 48 349 87 HOH HOH . H 5 HOH A 49 350 88 HOH HOH . H 5 HOH A 50 351 91 HOH HOH . H 5 HOH A 51 352 92 HOH HOH . H 5 HOH A 52 353 93 HOH HOH . H 5 HOH A 53 354 94 HOH HOH . H 5 HOH A 54 355 98 HOH HOH . H 5 HOH A 55 356 99 HOH HOH . H 5 HOH A 56 357 100 HOH HOH . H 5 HOH A 57 358 101 HOH HOH . H 5 HOH A 58 359 102 HOH HOH . H 5 HOH A 59 360 103 HOH HOH . H 5 HOH A 60 361 107 HOH HOH . H 5 HOH A 61 362 108 HOH HOH . H 5 HOH A 62 363 111 HOH HOH . H 5 HOH A 63 364 113 HOH HOH . H 5 HOH A 64 365 114 HOH HOH . H 5 HOH A 65 366 116 HOH HOH . H 5 HOH A 66 367 118 HOH HOH . H 5 HOH A 67 368 119 HOH HOH . H 5 HOH A 68 369 121 HOH HOH . H 5 HOH A 69 370 122 HOH HOH . H 5 HOH A 70 371 124 HOH HOH . H 5 HOH A 71 372 126 HOH HOH . H 5 HOH A 72 373 127 HOH HOH . H 5 HOH A 73 374 128 HOH HOH . H 5 HOH A 74 375 129 HOH HOH . H 5 HOH A 75 376 130 HOH HOH . H 5 HOH A 76 377 133 HOH HOH . H 5 HOH A 77 378 136 HOH HOH . H 5 HOH A 78 379 137 HOH HOH . H 5 HOH A 79 380 138 HOH HOH . H 5 HOH A 80 381 140 HOH HOH . H 5 HOH A 81 382 141 HOH HOH . H 5 HOH A 82 383 142 HOH HOH . H 5 HOH A 83 384 143 HOH HOH . H 5 HOH A 84 385 144 HOH HOH . H 5 HOH A 85 386 147 HOH HOH . H 5 HOH A 86 387 149 HOH HOH . H 5 HOH A 87 388 151 HOH HOH . H 5 HOH A 88 389 152 HOH HOH . H 5 HOH A 89 390 153 HOH HOH . H 5 HOH A 90 391 156 HOH HOH . H 5 HOH A 91 392 158 HOH HOH . H 5 HOH A 92 393 159 HOH HOH . H 5 HOH A 93 394 160 HOH HOH . H 5 HOH A 94 395 162 HOH HOH . H 5 HOH A 95 396 164 HOH HOH . H 5 HOH A 96 397 167 HOH HOH . H 5 HOH A 97 398 173 HOH HOH . H 5 HOH A 98 399 174 HOH HOH . H 5 HOH A 99 400 175 HOH HOH . H 5 HOH A 100 401 176 HOH HOH . H 5 HOH A 101 402 179 HOH HOH . H 5 HOH A 102 403 180 HOH HOH . H 5 HOH A 103 404 182 HOH HOH . H 5 HOH A 104 405 184 HOH HOH . H 5 HOH A 105 406 185 HOH HOH . H 5 HOH A 106 407 186 HOH HOH . H 5 HOH A 107 408 187 HOH HOH . H 5 HOH A 108 409 190 HOH HOH . H 5 HOH A 109 410 193 HOH HOH . H 5 HOH A 110 411 195 HOH HOH . H 5 HOH A 111 412 196 HOH HOH . H 5 HOH A 112 413 197 HOH HOH . H 5 HOH A 113 414 199 HOH HOH . H 5 HOH A 114 415 200 HOH HOH . H 5 HOH A 115 416 201 HOH HOH . H 5 HOH A 116 417 205 HOH HOH . H 5 HOH A 117 418 206 HOH HOH . H 5 HOH A 118 419 207 HOH HOH . H 5 HOH A 119 420 214 HOH HOH . H 5 HOH A 120 421 217 HOH HOH . H 5 HOH A 121 422 218 HOH HOH . H 5 HOH A 122 423 219 HOH HOH . H 5 HOH A 123 424 221 HOH HOH . H 5 HOH A 124 425 222 HOH HOH . I 5 HOH B 1 303 1 HOH HOH . I 5 HOH B 2 304 3 HOH HOH . I 5 HOH B 3 305 4 HOH HOH . I 5 HOH B 4 306 6 HOH HOH . I 5 HOH B 5 307 7 HOH HOH . I 5 HOH B 6 308 15 HOH HOH . I 5 HOH B 7 309 16 HOH HOH . I 5 HOH B 8 310 18 HOH HOH . I 5 HOH B 9 311 19 HOH HOH . I 5 HOH B 10 312 20 HOH HOH . I 5 HOH B 11 313 21 HOH HOH . I 5 HOH B 12 314 26 HOH HOH . I 5 HOH B 13 315 28 HOH HOH . I 5 HOH B 14 316 32 HOH HOH . I 5 HOH B 15 317 34 HOH HOH . I 5 HOH B 16 318 37 HOH HOH . I 5 HOH B 17 319 40 HOH HOH . I 5 HOH B 18 320 41 HOH HOH . I 5 HOH B 19 321 44 HOH HOH . I 5 HOH B 20 322 45 HOH HOH . I 5 HOH B 21 323 46 HOH HOH . I 5 HOH B 22 324 48 HOH HOH . I 5 HOH B 23 325 49 HOH HOH . I 5 HOH B 24 326 52 HOH HOH . I 5 HOH B 25 327 53 HOH HOH . I 5 HOH B 26 328 55 HOH HOH . I 5 HOH B 27 329 57 HOH HOH . I 5 HOH B 28 330 58 HOH HOH . I 5 HOH B 29 331 62 HOH HOH . I 5 HOH B 30 332 65 HOH HOH . I 5 HOH B 31 333 66 HOH HOH . I 5 HOH B 32 334 68 HOH HOH . I 5 HOH B 33 335 69 HOH HOH . I 5 HOH B 34 336 72 HOH HOH . I 5 HOH B 35 337 74 HOH HOH . I 5 HOH B 36 338 76 HOH HOH . I 5 HOH B 37 339 77 HOH HOH . I 5 HOH B 38 340 82 HOH HOH . I 5 HOH B 39 341 83 HOH HOH . I 5 HOH B 40 342 89 HOH HOH . I 5 HOH B 41 343 90 HOH HOH . I 5 HOH B 42 344 95 HOH HOH . I 5 HOH B 43 345 96 HOH HOH . I 5 HOH B 44 346 97 HOH HOH . I 5 HOH B 45 347 104 HOH HOH . I 5 HOH B 46 348 105 HOH HOH . I 5 HOH B 47 349 106 HOH HOH . I 5 HOH B 48 350 109 HOH HOH . I 5 HOH B 49 351 110 HOH HOH . I 5 HOH B 50 352 112 HOH HOH . I 5 HOH B 51 353 115 HOH HOH . I 5 HOH B 52 354 117 HOH HOH . I 5 HOH B 53 355 120 HOH HOH . I 5 HOH B 54 356 123 HOH HOH . I 5 HOH B 55 357 125 HOH HOH . I 5 HOH B 56 358 131 HOH HOH . I 5 HOH B 57 359 132 HOH HOH . I 5 HOH B 58 360 134 HOH HOH . I 5 HOH B 59 361 135 HOH HOH . I 5 HOH B 60 362 139 HOH HOH . I 5 HOH B 61 363 145 HOH HOH . I 5 HOH B 62 364 146 HOH HOH . I 5 HOH B 63 365 148 HOH HOH . I 5 HOH B 64 366 150 HOH HOH . I 5 HOH B 65 367 154 HOH HOH . I 5 HOH B 66 368 155 HOH HOH . I 5 HOH B 67 369 157 HOH HOH . I 5 HOH B 68 370 161 HOH HOH . I 5 HOH B 69 371 163 HOH HOH . I 5 HOH B 70 372 165 HOH HOH . I 5 HOH B 71 373 166 HOH HOH . I 5 HOH B 72 374 168 HOH HOH . I 5 HOH B 73 375 169 HOH HOH . I 5 HOH B 74 376 170 HOH HOH . I 5 HOH B 75 377 171 HOH HOH . I 5 HOH B 76 378 172 HOH HOH . I 5 HOH B 77 379 177 HOH HOH . I 5 HOH B 78 380 178 HOH HOH . I 5 HOH B 79 381 181 HOH HOH . I 5 HOH B 80 382 183 HOH HOH . I 5 HOH B 81 383 188 HOH HOH . I 5 HOH B 82 384 189 HOH HOH . I 5 HOH B 83 385 191 HOH HOH . I 5 HOH B 84 386 192 HOH HOH . I 5 HOH B 85 387 194 HOH HOH . I 5 HOH B 86 388 198 HOH HOH . I 5 HOH B 87 389 202 HOH HOH . I 5 HOH B 88 390 203 HOH HOH . I 5 HOH B 89 391 204 HOH HOH . I 5 HOH B 90 392 208 HOH HOH . I 5 HOH B 91 393 209 HOH HOH . I 5 HOH B 92 394 210 HOH HOH . I 5 HOH B 93 395 211 HOH HOH . I 5 HOH B 94 396 212 HOH HOH . I 5 HOH B 95 397 213 HOH HOH . I 5 HOH B 96 398 215 HOH HOH . I 5 HOH B 97 399 216 HOH HOH . I 5 HOH B 98 400 220 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 55.506 _atom_site.Cartn_y 24.172 _atom_site.Cartn_z -0.469 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #