data_1DFG
#
_model_server_result.job_id            fbmrPZDuH2V-n5dFsMaaug 
_model_server_result.datetime_utc      '2024-10-30 13:19:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dfg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":0}' 
#
_entry.id    1DFG 
#
_exptl.entry_id    1DFG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.141 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DFG 
_cell.length_a            80.6 
_cell.length_b            80.6 
_cell.length_c            325.3 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DFG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 40.3 69.801648 271.083333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D B1 NDT . A NDT 0 1_555 C O2D NAD . A NAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale2 F B1 NDT . B NDT 0 1_555 E O2D NAD . B NAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? 
#
_chem_comp.formula           'C14 H13 B N2 O3 S' 
_chem_comp.formula_weight    300.141 
_chem_comp.id                NDT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C4 NDT doub 310 n y 
C1 C8 NDT sing 311 n y 
C1 C2 NDT sing 312 n n 
C4 C5 NDT sing 313 n y 
C4 B1 NDT sing 314 n n 
C5 C6 NDT doub 315 n y 
C5 H5 NDT sing 316 n n 
C6 C7 NDT sing 317 n y 
C6 H6 NDT sing 318 n n 
C7 C8 NDT doub 319 n y 
C7 H7 NDT sing 320 n n 
C8 H8 NDT sing 321 n n 
C2 N1 NDT doub 322 n n 
C2 H2 NDT sing 323 n n 
N1 N2 NDT sing 324 n n 
N2 B1 NDT sing 325 n n 
N2 S1 NDT sing 326 n n 
B1 O1 NDT sing 327 n n 
O1 HO1 NDT sing 328 n n 
S1 O2 NDT doub 329 n n 
S1 O3 NDT doub 330 n n 
S1 C15 NDT sing 331 n n 
C15 C16 NDT doub 332 n y 
C15 C20 NDT sing 333 n y 
C16 C17 NDT sing 334 n y 
C16 H16 NDT sing 335 n n 
C17 C18 NDT doub 336 n y 
C17 H17 NDT sing 337 n n 
C18 C19 NDT sing 338 n y 
C18 C21 NDT sing 339 n n 
C19 C20 NDT doub 340 n y 
C19 H19 NDT sing 341 n n 
C20 H20 NDT sing 342 n n 
C21 H211 NDT sing 343 n n 
C21 H212 NDT sing 344 n n 
C21 H213 NDT sing 345 n n 
#
_atom_sites.entry_id                     1DFG 
_atom_sites.fract_transf_matrix[1][1]    0.012407 
_atom_sites.fract_transf_matrix[1][2]    0.007163 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003074 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 501 501 NAD NAD . 
D 3 NDT A 1 0 0 NDT NDT . 
E 2 NAD B 1 501 501 NAD NAD . 
F 3 NDT B 1 0 0 NDT NDT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDT . . . D 3 2.798 22.319 132.659 1 16.48 ? C1 NDT 0 A 1 
HETATM 2 C C4 NDT . . . D 3 2.592 23.326 133.609 1 18.34 ? C4 NDT 0 A 1 
HETATM 3 C C5 NDT . . . D 3 2.601 24.639 133.166 1 3.98 ? C5 NDT 0 A 1 
HETATM 4 C C6 NDT . . . D 3 2.814 24.964 131.829 1 26.97 ? C6 NDT 0 A 1 
HETATM 5 C C7 NDT . . . D 3 3.02 23.949 130.893 1 6.9 ? C7 NDT 0 A 1 
HETATM 6 C C8 NDT . . . D 3 3.012 22.629 131.319 1 29.18 ? C8 NDT 0 A 1 
HETATM 7 C C2 NDT . . . D 3 2.764 20.97 133.059 1 7.92 ? C2 NDT 0 A 1 
HETATM 8 N N1 NDT . . . D 3 2.522 20.621 134.323 1 15.43 ? N1 NDT 0 A 1 
HETATM 9 N N2 NDT . . . D 3 2.353 21.547 135.303 1 21.86 ? N2 NDT 0 A 1 
HETATM 10 B B1 NDT . . . D 3 2.329 22.966 135.096 1 25.36 ? B1 NDT 0 A 1 
HETATM 11 O O1 NDT . . . D 3 1.095 23.778 135.627 1 15.27 ? O1 NDT 0 A 1 
HETATM 12 S S1 NDT . . . D 3 1.707 20.847 136.742 1 28.92 ? S1 NDT 0 A 1 
HETATM 13 O O2 NDT . . . D 3 2.788 20.179 137.46 1 16.55 ? O2 NDT 0 A 1 
HETATM 14 O O3 NDT . . . D 3 1.256 21.906 137.623 1 10.48 ? O3 NDT 0 A 1 
HETATM 15 C C15 NDT . . . D 3 0.195 20.174 136.648 1 27.62 ? C15 NDT 0 A 1 
HETATM 16 C C16 NDT . . . D 3 -0.118 18.912 137.1 1 67.26 ? C16 NDT 0 A 1 
HETATM 17 C C17 NDT . . . D 3 -1.305 18.302 136.743 1 43.56 ? C17 NDT 0 A 1 
HETATM 18 C C18 NDT . . . D 3 -2.164 18.973 135.9 1 25.65 ? C18 NDT 0 A 1 
HETATM 19 C C19 NDT . . . D 3 -1.855 20.245 135.434 1 42.62 ? C19 NDT 0 A 1 
HETATM 20 C C20 NDT . . . D 3 -0.673 20.848 135.82 1 23.45 ? C20 NDT 0 A 1 
HETATM 21 C C21 NDT . . . D 3 -3.269 18.154 135.193 1 24.78 ? C21 NDT 0 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#