data_1DFG # _model_server_result.job_id EZAA9l-waevzd5BkMi6BOg _model_server_result.datetime_utc '2024-10-30 13:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":0}' # _entry.id 1DFG # _exptl.entry_id 1DFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.141 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DFG _cell.length_a 80.6 _cell.length_b 80.6 _cell.length_c 325.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 40.3 69.801648 271.083333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D B1 NDT . A NDT 0 1_555 C O2D NAD . A NAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale2 F B1 NDT . B NDT 0 1_555 E O2D NAD . B NAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? # _chem_comp.formula 'C14 H13 B N2 O3 S' _chem_comp.formula_weight 300.141 _chem_comp.id NDT _chem_comp.mon_nstd_flag . _chem_comp.name 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4 NDT doub 310 n y C1 C8 NDT sing 311 n y C1 C2 NDT sing 312 n n C4 C5 NDT sing 313 n y C4 B1 NDT sing 314 n n C5 C6 NDT doub 315 n y C5 H5 NDT sing 316 n n C6 C7 NDT sing 317 n y C6 H6 NDT sing 318 n n C7 C8 NDT doub 319 n y C7 H7 NDT sing 320 n n C8 H8 NDT sing 321 n n C2 N1 NDT doub 322 n n C2 H2 NDT sing 323 n n N1 N2 NDT sing 324 n n N2 B1 NDT sing 325 n n N2 S1 NDT sing 326 n n B1 O1 NDT sing 327 n n O1 HO1 NDT sing 328 n n S1 O2 NDT doub 329 n n S1 O3 NDT doub 330 n n S1 C15 NDT sing 331 n n C15 C16 NDT doub 332 n y C15 C20 NDT sing 333 n y C16 C17 NDT sing 334 n y C16 H16 NDT sing 335 n n C17 C18 NDT doub 336 n y C17 H17 NDT sing 337 n n C18 C19 NDT sing 338 n y C18 C21 NDT sing 339 n n C19 C20 NDT doub 340 n y C19 H19 NDT sing 341 n n C20 H20 NDT sing 342 n n C21 H211 NDT sing 343 n n C21 H212 NDT sing 344 n n C21 H213 NDT sing 345 n n # _atom_sites.entry_id 1DFG _atom_sites.fract_transf_matrix[1][1] 0.012407 _atom_sites.fract_transf_matrix[1][2] 0.007163 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 501 501 NAD NAD . D 3 NDT A 1 0 0 NDT NDT . E 2 NAD B 1 501 501 NAD NAD . F 3 NDT B 1 0 0 NDT NDT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDT . . . F 3 -9.067 44.978 154.411 1 20.3 ? C1 NDT 0 B 1 HETATM 2 C C4 NDT . . . F 3 -8.677 44.269 153.295 1 9.48 ? C4 NDT 0 B 1 HETATM 3 C C5 NDT . . . F 3 -7.613 44.772 152.578 1 12.01 ? C5 NDT 0 B 1 HETATM 4 C C6 NDT . . . F 3 -6.952 45.956 152.957 1 5.58 ? C6 NDT 0 B 1 HETATM 5 C C7 NDT . . . F 3 -7.406 46.69 154.06 1 21.5 ? C7 NDT 0 B 1 HETATM 6 C C8 NDT . . . F 3 -8.453 46.178 154.789 1 7.27 ? C8 NDT 0 B 1 HETATM 7 C C2 NDT . . . F 3 -10.072 44.446 155.195 1 7.82 ? C2 NDT 0 B 1 HETATM 8 N N1 NDT . . . F 3 -10.656 43.303 154.944 1 24.23 ? N1 NDT 0 B 1 HETATM 9 N N2 NDT . . . F 3 -10.347 42.572 153.898 1 19.29 ? N2 NDT 0 B 1 HETATM 10 B B1 NDT . . . F 3 -9.328 42.918 152.937 1 15.67 ? B1 NDT 0 B 1 HETATM 11 O O1 NDT . . . F 3 -8.057 41.991 152.737 1 16.71 ? O1 NDT 0 B 1 HETATM 12 S S1 NDT . . . F 3 -10.831 40.987 154.203 1 27.35 ? S1 NDT 0 B 1 HETATM 13 O O2 NDT . . . F 3 -12.249 40.948 154.264 1 8.53 ? O2 NDT 0 B 1 HETATM 14 O O3 NDT . . . F 3 -10.438 40.158 153.079 1 14.34 ? O3 NDT 0 B 1 HETATM 15 C C15 NDT . . . F 3 -10.236 40.198 155.546 1 39.56 ? C15 NDT 0 B 1 HETATM 16 C C16 NDT . . . F 3 -11.065 39.781 156.55 1 19.66 ? C16 NDT 0 B 1 HETATM 17 C C17 NDT . . . F 3 -10.6 39.365 157.793 1 6.11 ? C17 NDT 0 B 1 HETATM 18 C C18 NDT . . . F 3 -9.267 39.344 158.053 1 72.94 ? C18 NDT 0 B 1 HETATM 19 C C19 NDT . . . F 3 -8.406 39.77 157.077 1 14.22 ? C19 NDT 0 B 1 HETATM 20 C C20 NDT . . . F 3 -8.884 40.182 155.838 1 38.65 ? C20 NDT 0 B 1 HETATM 21 C C21 NDT . . . F 3 -8.795 38.539 159.302 1 8.61 ? C21 NDT 0 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #