data_1DFP # _model_server_result.job_id yGeg0YLaFyDffJyoeK2Lag _model_server_result.datetime_utc '2024-11-07 06:28:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1DFP # _exptl.entry_id 1DFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.155 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIISOPROPYL PHOSPHONATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.05 _cell.angle_gamma 90 _cell.entry_id 1DFP _cell.length_a 40.6 _cell.length_b 125.7 _cell.length_c 41.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 123 A CYS 136 1_555 A SG CYS 189 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf3 A SG CYS 154 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 179 A CYS 191 1_555 A SG CYS 204 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf6 B SG CYS 123 B CYS 136 1_555 B SG CYS 189 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 154 B CYS 168 1_555 B SG CYS 170 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 B SG CYS 179 B CYS 191 1_555 B SG CYS 204 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A OG SER 183 A SER 195 1_555 C P DFP . A DFP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? covale ? covale2 B OG SER 183 B SER 195 1_555 D P DFP . B DFP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? # _chem_comp.formula 'C6 H15 O3 P' _chem_comp.formula_weight 166.155 _chem_comp.id DFP _chem_comp.mon_nstd_flag . _chem_comp.name 'DIISOPROPYL PHOSPHONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DFP _atom_sites.fract_transf_matrix[1][1] 0.024631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008989 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DFP A 1 500 500 DFP DFP . D 2 DFP B 1 501 501 DFP DFP . E 3 HOH A 1 601 601 HOH HOH . E 3 HOH A 2 603 603 HOH HOH . E 3 HOH A 3 604 604 HOH HOH . E 3 HOH A 4 605 605 HOH HOH . E 3 HOH A 5 606 606 HOH HOH . E 3 HOH A 6 607 607 HOH HOH . E 3 HOH A 7 608 608 HOH HOH . E 3 HOH A 8 609 609 HOH HOH . E 3 HOH A 9 610 610 HOH HOH . E 3 HOH A 10 613 613 HOH HOH . E 3 HOH A 11 615 615 HOH HOH . E 3 HOH A 12 617 617 HOH HOH . E 3 HOH A 13 619 619 HOH HOH . E 3 HOH A 14 621 621 HOH HOH . E 3 HOH A 15 622 622 HOH HOH . E 3 HOH A 16 623 623 HOH HOH . E 3 HOH A 17 624 624 HOH HOH . E 3 HOH A 18 625 625 HOH HOH . E 3 HOH A 19 626 626 HOH HOH . E 3 HOH A 20 627 627 HOH HOH . E 3 HOH A 21 628 628 HOH HOH . E 3 HOH A 22 629 629 HOH HOH . E 3 HOH A 23 630 630 HOH HOH . E 3 HOH A 24 631 631 HOH HOH . E 3 HOH A 25 632 632 HOH HOH . E 3 HOH A 26 633 633 HOH HOH . E 3 HOH A 27 634 634 HOH HOH . E 3 HOH A 28 635 635 HOH HOH . E 3 HOH A 29 636 636 HOH HOH . E 3 HOH A 30 637 637 HOH HOH . E 3 HOH A 31 638 638 HOH HOH . E 3 HOH A 32 639 639 HOH HOH . E 3 HOH A 33 641 641 HOH HOH . E 3 HOH A 34 643 643 HOH HOH . E 3 HOH A 35 644 644 HOH HOH . E 3 HOH A 36 645 645 HOH HOH . E 3 HOH A 37 646 646 HOH HOH . E 3 HOH A 38 647 647 HOH HOH . E 3 HOH A 39 648 648 HOH HOH . E 3 HOH A 40 649 649 HOH HOH . E 3 HOH A 41 652 652 HOH HOH . E 3 HOH A 42 653 653 HOH HOH . E 3 HOH A 43 660 660 HOH HOH . E 3 HOH A 44 663 663 HOH HOH . E 3 HOH A 45 665 665 HOH HOH . E 3 HOH A 46 666 666 HOH HOH . E 3 HOH A 47 667 667 HOH HOH . E 3 HOH A 48 668 668 HOH HOH . E 3 HOH A 49 669 669 HOH HOH . E 3 HOH A 50 670 670 HOH HOH . E 3 HOH A 51 671 671 HOH HOH . E 3 HOH A 52 672 672 HOH HOH . E 3 HOH A 53 673 673 HOH HOH . E 3 HOH A 54 674 674 HOH HOH . E 3 HOH A 55 675 675 HOH HOH . E 3 HOH A 56 676 676 HOH HOH . E 3 HOH A 57 677 677 HOH HOH . E 3 HOH A 58 678 678 HOH HOH . E 3 HOH A 59 679 679 HOH HOH . E 3 HOH A 60 680 680 HOH HOH . E 3 HOH A 61 684 684 HOH HOH . E 3 HOH A 62 685 685 HOH HOH . E 3 HOH A 63 686 686 HOH HOH . E 3 HOH A 64 687 687 HOH HOH . E 3 HOH A 65 732 732 HOH HOH . E 3 HOH A 66 733 733 HOH HOH . E 3 HOH A 67 734 734 HOH HOH . E 3 HOH A 68 749 749 HOH HOH . E 3 HOH A 69 750 750 HOH HOH . E 3 HOH A 70 753 753 HOH HOH . E 3 HOH A 71 754 754 HOH HOH . E 3 HOH A 72 755 755 HOH HOH . E 3 HOH A 73 756 756 HOH HOH . E 3 HOH A 74 757 757 HOH HOH . E 3 HOH A 75 758 758 HOH HOH . E 3 HOH A 76 759 759 HOH HOH . E 3 HOH A 77 760 760 HOH HOH . E 3 HOH A 78 762 762 HOH HOH . E 3 HOH A 79 766 766 HOH HOH . E 3 HOH A 80 767 767 HOH HOH . E 3 HOH A 81 768 768 HOH HOH . E 3 HOH A 82 789 789 HOH HOH . E 3 HOH A 83 790 790 HOH HOH . E 3 HOH A 84 791 791 HOH HOH . E 3 HOH A 85 796 796 HOH HOH . E 3 HOH A 86 797 797 HOH HOH . E 3 HOH A 87 798 798 HOH HOH . E 3 HOH A 88 801 801 HOH HOH . E 3 HOH A 89 802 802 HOH HOH . E 3 HOH A 90 803 803 HOH HOH . E 3 HOH A 91 804 804 HOH HOH . E 3 HOH A 92 805 805 HOH HOH . E 3 HOH A 93 807 807 HOH HOH . E 3 HOH A 94 809 809 HOH HOH . E 3 HOH A 95 810 810 HOH HOH . E 3 HOH A 96 824 824 HOH HOH . E 3 HOH A 97 829 829 HOH HOH . E 3 HOH A 98 850 850 HOH HOH . E 3 HOH A 99 851 851 HOH HOH . E 3 HOH A 100 852 852 HOH HOH . E 3 HOH A 101 853 853 HOH HOH . E 3 HOH A 102 854 854 HOH HOH . E 3 HOH A 103 855 855 HOH HOH . E 3 HOH A 104 860 860 HOH HOH . E 3 HOH A 105 862 862 HOH HOH . E 3 HOH A 106 863 863 HOH HOH . E 3 HOH A 107 866 866 HOH HOH . E 3 HOH A 108 867 867 HOH HOH . E 3 HOH A 109 869 869 HOH HOH . E 3 HOH A 110 870 870 HOH HOH . E 3 HOH A 111 871 871 HOH HOH . E 3 HOH A 112 872 872 HOH HOH . E 3 HOH A 113 873 873 HOH HOH . E 3 HOH A 114 874 874 HOH HOH . E 3 HOH A 115 875 875 HOH HOH . E 3 HOH A 116 877 877 HOH HOH . E 3 HOH A 117 878 878 HOH HOH . E 3 HOH A 118 879 879 HOH HOH . E 3 HOH A 119 880 880 HOH HOH . E 3 HOH A 120 881 881 HOH HOH . E 3 HOH A 121 883 883 HOH HOH . E 3 HOH A 122 884 884 HOH HOH . E 3 HOH A 123 894 894 HOH HOH . E 3 HOH A 124 895 895 HOH HOH . E 3 HOH A 125 899 899 HOH HOH . E 3 HOH A 126 900 900 HOH HOH . E 3 HOH A 127 901 901 HOH HOH . E 3 HOH A 128 906 906 HOH HOH . E 3 HOH A 129 907 907 HOH HOH . E 3 HOH A 130 908 908 HOH HOH . E 3 HOH A 131 909 909 HOH HOH . F 3 HOH B 1 611 611 HOH HOH . F 3 HOH B 2 612 612 HOH HOH . F 3 HOH B 3 614 614 HOH HOH . F 3 HOH B 4 650 650 HOH HOH . F 3 HOH B 5 651 651 HOH HOH . F 3 HOH B 6 654 654 HOH HOH . F 3 HOH B 7 659 659 HOH HOH . F 3 HOH B 8 661 661 HOH HOH . F 3 HOH B 9 662 662 HOH HOH . F 3 HOH B 10 664 664 HOH HOH . F 3 HOH B 11 683 683 HOH HOH . F 3 HOH B 12 688 688 HOH HOH . F 3 HOH B 13 689 689 HOH HOH . F 3 HOH B 14 690 690 HOH HOH . F 3 HOH B 15 691 691 HOH HOH . F 3 HOH B 16 692 692 HOH HOH . F 3 HOH B 17 693 693 HOH HOH . F 3 HOH B 18 694 694 HOH HOH . F 3 HOH B 19 695 695 HOH HOH . F 3 HOH B 20 696 696 HOH HOH . F 3 HOH B 21 697 697 HOH HOH . F 3 HOH B 22 698 698 HOH HOH . F 3 HOH B 23 699 699 HOH HOH . F 3 HOH B 24 700 700 HOH HOH . F 3 HOH B 25 701 701 HOH HOH . F 3 HOH B 26 703 703 HOH HOH . F 3 HOH B 27 704 704 HOH HOH . F 3 HOH B 28 705 705 HOH HOH . F 3 HOH B 29 706 706 HOH HOH . F 3 HOH B 30 707 707 HOH HOH . F 3 HOH B 31 708 708 HOH HOH . F 3 HOH B 32 709 709 HOH HOH . F 3 HOH B 33 710 710 HOH HOH . F 3 HOH B 34 711 711 HOH HOH . F 3 HOH B 35 712 712 HOH HOH . F 3 HOH B 36 713 713 HOH HOH . F 3 HOH B 37 714 714 HOH HOH . F 3 HOH B 38 715 715 HOH HOH . F 3 HOH B 39 716 716 HOH HOH . F 3 HOH B 40 717 717 HOH HOH . F 3 HOH B 41 718 718 HOH HOH . F 3 HOH B 42 719 719 HOH HOH . F 3 HOH B 43 720 720 HOH HOH . F 3 HOH B 44 721 721 HOH HOH . F 3 HOH B 45 722 722 HOH HOH . F 3 HOH B 46 723 723 HOH HOH . F 3 HOH B 47 724 724 HOH HOH . F 3 HOH B 48 725 725 HOH HOH . F 3 HOH B 49 726 726 HOH HOH . F 3 HOH B 50 727 727 HOH HOH . F 3 HOH B 51 729 729 HOH HOH . F 3 HOH B 52 730 730 HOH HOH . F 3 HOH B 53 731 731 HOH HOH . F 3 HOH B 54 735 735 HOH HOH . F 3 HOH B 55 736 736 HOH HOH . F 3 HOH B 56 738 738 HOH HOH . F 3 HOH B 57 739 739 HOH HOH . F 3 HOH B 58 740 740 HOH HOH . F 3 HOH B 59 741 741 HOH HOH . F 3 HOH B 60 742 742 HOH HOH . F 3 HOH B 61 743 743 HOH HOH . F 3 HOH B 62 744 744 HOH HOH . F 3 HOH B 63 745 745 HOH HOH . F 3 HOH B 64 746 746 HOH HOH . F 3 HOH B 65 747 747 HOH HOH . F 3 HOH B 66 748 748 HOH HOH . F 3 HOH B 67 751 751 HOH HOH . F 3 HOH B 68 752 752 HOH HOH . F 3 HOH B 69 761 761 HOH HOH . F 3 HOH B 70 763 763 HOH HOH . F 3 HOH B 71 765 765 HOH HOH . F 3 HOH B 72 772 772 HOH HOH . F 3 HOH B 73 773 773 HOH HOH . F 3 HOH B 74 774 774 HOH HOH . F 3 HOH B 75 775 775 HOH HOH . F 3 HOH B 76 776 776 HOH HOH . F 3 HOH B 77 777 777 HOH HOH . F 3 HOH B 78 778 778 HOH HOH . F 3 HOH B 79 779 779 HOH HOH . F 3 HOH B 80 780 780 HOH HOH . F 3 HOH B 81 781 781 HOH HOH . F 3 HOH B 82 782 782 HOH HOH . F 3 HOH B 83 783 783 HOH HOH . F 3 HOH B 84 784 784 HOH HOH . F 3 HOH B 85 785 785 HOH HOH . F 3 HOH B 86 786 786 HOH HOH . F 3 HOH B 87 787 787 HOH HOH . F 3 HOH B 88 788 788 HOH HOH . F 3 HOH B 89 792 792 HOH HOH . F 3 HOH B 90 793 793 HOH HOH . F 3 HOH B 91 794 794 HOH HOH . F 3 HOH B 92 795 795 HOH HOH . F 3 HOH B 93 808 808 HOH HOH . F 3 HOH B 94 811 811 HOH HOH . F 3 HOH B 95 812 812 HOH HOH . F 3 HOH B 96 813 813 HOH HOH . F 3 HOH B 97 814 814 HOH HOH . F 3 HOH B 98 815 815 HOH HOH . F 3 HOH B 99 816 816 HOH HOH . F 3 HOH B 100 817 817 HOH HOH . F 3 HOH B 101 818 818 HOH HOH . F 3 HOH B 102 819 819 HOH HOH . F 3 HOH B 103 820 820 HOH HOH . F 3 HOH B 104 821 821 HOH HOH . F 3 HOH B 105 822 822 HOH HOH . F 3 HOH B 106 823 823 HOH HOH . F 3 HOH B 107 825 825 HOH HOH . F 3 HOH B 108 826 826 HOH HOH . F 3 HOH B 109 827 827 HOH HOH . F 3 HOH B 110 828 828 HOH HOH . F 3 HOH B 111 830 830 HOH HOH . F 3 HOH B 112 864 864 HOH HOH . F 3 HOH B 113 865 865 HOH HOH . F 3 HOH B 114 868 868 HOH HOH . F 3 HOH B 115 876 876 HOH HOH . F 3 HOH B 116 882 882 HOH HOH . F 3 HOH B 117 885 885 HOH HOH . F 3 HOH B 118 886 886 HOH HOH . F 3 HOH B 119 887 887 HOH HOH . F 3 HOH B 120 888 888 HOH HOH . F 3 HOH B 121 889 889 HOH HOH . F 3 HOH B 122 891 891 HOH HOH . F 3 HOH B 123 892 892 HOH HOH . F 3 HOH B 124 893 893 HOH HOH . F 3 HOH B 125 896 896 HOH HOH . F 3 HOH B 126 897 897 HOH HOH . F 3 HOH B 127 898 898 HOH HOH . F 3 HOH B 128 902 902 HOH HOH . F 3 HOH B 129 904 904 HOH HOH . F 3 HOH B 130 905 905 HOH HOH . F 3 HOH B 131 910 910 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DFP . . . D 2 -0.184 -26.494 -2.245 1 31.48 ? C1 DFP 501 B 1 HETATM 2 C C2 DFP . . . D 2 0.724 -27.737 -2.113 1 32.23 ? C2 DFP 501 B 1 HETATM 3 C C3 DFP . . . D 2 -0.641 -26.099 -3.696 1 27.69 ? C3 DFP 501 B 1 HETATM 4 C C1' DFP . . . D 2 -0.169 -25.098 2.413 1 27.41 ? C1' DFP 501 B 1 HETATM 5 C C2' DFP . . . D 2 -0.816 -26.193 3.296 1 20.92 ? C2' DFP 501 B 1 HETATM 6 C C3' DFP . . . D 2 -0.708 -23.698 2.898 1 25.48 ? C3' DFP 501 B 1 HETATM 7 P P DFP . . . D 2 -0.34 -24.557 -0.433 1 27.19 ? P DFP 501 B 1 HETATM 8 O O1P DFP . . . D 2 0.488 -25.391 -1.58 1 28.48 ? O1P DFP 501 B 1 HETATM 9 O O2P DFP . . . D 2 -0.343 -25.455 0.981 1 28.49 ? O2P DFP 501 B 1 HETATM 10 O O3P DFP . . . D 2 -1.735 -24.272 -0.935 1 26.81 ? O3P DFP 501 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #