data_1DFQ # _model_server_result.job_id Zp_bbPDTz0rVwRMm9YZVUw _model_server_result.datetime_utc '2024-10-24 04:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1400}' # _entry.id 1DFQ # _exptl.entry_id 1DFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-beta-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DFQ _cell.length_a 66.86 _cell.length_b 70.24 _cell.length_c 122.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SLB _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-beta-neuraminic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;O-sialic acid;5-N-ACETYL-BETA-D-NEURAMINIC ACID;BETA-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SLB sing 290 n n C1 O1A SLB doub 291 n n C1 O1B SLB sing 292 n n C2 C3 SLB sing 293 n n C2 O2 SLB sing 294 n n C2 O6 SLB sing 295 n n C3 C4 SLB sing 296 n n C3 H32 SLB sing 297 n n C3 H31 SLB sing 298 n n C4 C5 SLB sing 299 n n C4 O4 SLB sing 300 n n C4 H4 SLB sing 301 n n C5 C6 SLB sing 302 n n C5 N5 SLB sing 303 n n C5 H5 SLB sing 304 n n C6 C7 SLB sing 305 n n C6 O6 SLB sing 306 n n C6 H6 SLB sing 307 n n C7 C8 SLB sing 308 n n C7 O7 SLB sing 309 n n C7 H7 SLB sing 310 n n C8 C9 SLB sing 311 n n C8 O8 SLB sing 312 n n C8 H8 SLB sing 313 n n C9 O9 SLB sing 314 n n C9 H92 SLB sing 315 n n C9 H91 SLB sing 316 n n C10 C11 SLB sing 317 n n C10 N5 SLB sing 318 n n C10 O10 SLB doub 319 n n C11 H111 SLB sing 320 n n C11 H113 SLB sing 321 n n C11 H112 SLB sing 322 n n N5 HN5 SLB sing 323 n n O1B HO1B SLB sing 324 n n O2 HO2 SLB sing 325 n n O4 HO4 SLB sing 326 n n O7 HO7 SLB sing 327 n n O8 HO8 SLB sing 328 n n O9 HO9 SLB sing 329 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SLB DNeup5Acb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SLB 'N-acetyl-b-D-neuraminic acid' 'COMMON NAME' GMML 1 SLB b-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SLB Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1DFQ _atom_sites.fract_transf_matrix[1][1] 0.01496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SLB A 1 1400 1400 SLB SIA . C 3 HOH A 1 1 1 HOH WAT . C 3 HOH A 2 2 2 HOH WAT . C 3 HOH A 3 3 3 HOH WAT . C 3 HOH A 4 4 4 HOH WAT . C 3 HOH A 5 5 5 HOH WAT . C 3 HOH A 6 6 6 HOH WAT . C 3 HOH A 7 7 7 HOH WAT . C 3 HOH A 8 8 8 HOH WAT . C 3 HOH A 9 9 9 HOH WAT . C 3 HOH A 10 10 10 HOH WAT . C 3 HOH A 11 11 11 HOH WAT . C 3 HOH A 12 12 12 HOH WAT . C 3 HOH A 13 13 13 HOH WAT . C 3 HOH A 14 14 14 HOH WAT . C 3 HOH A 15 15 15 HOH WAT . C 3 HOH A 16 16 16 HOH WAT . C 3 HOH A 17 17 17 HOH WAT . C 3 HOH A 18 18 18 HOH WAT . C 3 HOH A 19 19 19 HOH WAT . C 3 HOH A 20 20 20 HOH WAT . C 3 HOH A 21 21 21 HOH WAT . C 3 HOH A 22 22 22 HOH WAT . C 3 HOH A 23 23 23 HOH WAT . C 3 HOH A 24 24 24 HOH WAT . C 3 HOH A 25 25 25 HOH WAT . C 3 HOH A 26 26 26 HOH WAT . C 3 HOH A 27 27 27 HOH WAT . C 3 HOH A 28 28 28 HOH WAT . C 3 HOH A 29 29 29 HOH WAT . C 3 HOH A 30 30 30 HOH WAT . C 3 HOH A 31 31 31 HOH WAT . C 3 HOH A 32 32 32 HOH WAT . C 3 HOH A 33 33 33 HOH WAT . C 3 HOH A 34 34 34 HOH WAT . C 3 HOH A 35 35 35 HOH WAT . C 3 HOH A 36 36 36 HOH WAT . C 3 HOH A 37 37 37 HOH WAT . C 3 HOH A 38 38 38 HOH WAT . C 3 HOH A 39 39 39 HOH WAT . C 3 HOH A 40 40 40 HOH WAT . C 3 HOH A 41 41 41 HOH WAT . C 3 HOH A 42 42 42 HOH WAT . C 3 HOH A 43 43 43 HOH WAT . C 3 HOH A 44 44 44 HOH WAT . C 3 HOH A 45 45 45 HOH WAT . C 3 HOH A 46 46 46 HOH WAT . C 3 HOH A 47 47 47 HOH WAT . C 3 HOH A 48 48 48 HOH WAT . C 3 HOH A 49 49 49 HOH WAT . C 3 HOH A 50 50 50 HOH WAT . C 3 HOH A 51 51 51 HOH WAT . C 3 HOH A 52 52 52 HOH WAT . C 3 HOH A 53 53 53 HOH WAT . C 3 HOH A 54 54 54 HOH WAT . C 3 HOH A 55 55 55 HOH WAT . C 3 HOH A 56 56 56 HOH WAT . C 3 HOH A 57 57 57 HOH WAT . C 3 HOH A 58 58 58 HOH WAT . C 3 HOH A 59 59 59 HOH WAT . C 3 HOH A 60 60 60 HOH WAT . C 3 HOH A 61 61 61 HOH WAT . C 3 HOH A 62 62 62 HOH WAT . C 3 HOH A 63 63 63 HOH WAT . C 3 HOH A 64 64 64 HOH WAT . C 3 HOH A 65 65 65 HOH WAT . C 3 HOH A 66 66 66 HOH WAT . C 3 HOH A 67 67 67 HOH WAT . C 3 HOH A 68 68 68 HOH WAT . C 3 HOH A 69 69 69 HOH WAT . C 3 HOH A 70 70 70 HOH WAT . C 3 HOH A 71 71 71 HOH WAT . C 3 HOH A 72 72 72 HOH WAT . C 3 HOH A 73 73 73 HOH WAT . C 3 HOH A 74 74 74 HOH WAT . C 3 HOH A 75 75 75 HOH WAT . C 3 HOH A 76 76 76 HOH WAT . C 3 HOH A 77 77 77 HOH WAT . C 3 HOH A 78 78 78 HOH WAT . C 3 HOH A 79 79 79 HOH WAT . C 3 HOH A 80 80 80 HOH WAT . C 3 HOH A 81 81 81 HOH WAT . C 3 HOH A 82 82 82 HOH WAT . C 3 HOH A 83 83 83 HOH WAT . C 3 HOH A 84 84 84 HOH WAT . C 3 HOH A 85 85 85 HOH WAT . C 3 HOH A 86 86 86 HOH WAT . C 3 HOH A 87 87 87 HOH WAT . C 3 HOH A 88 88 88 HOH WAT . C 3 HOH A 89 89 89 HOH WAT . C 3 HOH A 90 90 90 HOH WAT . C 3 HOH A 91 91 91 HOH WAT . C 3 HOH A 92 92 92 HOH WAT . C 3 HOH A 93 93 93 HOH WAT . C 3 HOH A 94 94 94 HOH WAT . C 3 HOH A 95 95 95 HOH WAT . C 3 HOH A 96 96 96 HOH WAT . C 3 HOH A 97 97 97 HOH WAT . C 3 HOH A 98 98 98 HOH WAT . C 3 HOH A 99 99 99 HOH WAT . C 3 HOH A 100 100 100 HOH WAT . C 3 HOH A 101 101 101 HOH WAT . C 3 HOH A 102 102 102 HOH WAT . C 3 HOH A 103 103 103 HOH WAT . C 3 HOH A 104 104 104 HOH WAT . C 3 HOH A 105 105 105 HOH WAT . C 3 HOH A 106 106 106 HOH WAT . C 3 HOH A 107 107 107 HOH WAT . C 3 HOH A 108 108 108 HOH WAT . C 3 HOH A 109 109 109 HOH WAT . C 3 HOH A 110 110 110 HOH WAT . C 3 HOH A 111 111 111 HOH WAT . C 3 HOH A 112 112 112 HOH WAT . C 3 HOH A 113 113 113 HOH WAT . C 3 HOH A 114 114 114 HOH WAT . C 3 HOH A 115 115 115 HOH WAT . C 3 HOH A 116 116 116 HOH WAT . C 3 HOH A 117 117 117 HOH WAT . C 3 HOH A 118 118 118 HOH WAT . C 3 HOH A 119 119 119 HOH WAT . C 3 HOH A 120 120 120 HOH WAT . C 3 HOH A 121 121 121 HOH WAT . C 3 HOH A 122 122 122 HOH WAT . C 3 HOH A 123 123 123 HOH WAT . C 3 HOH A 124 124 124 HOH WAT . C 3 HOH A 125 125 125 HOH WAT . C 3 HOH A 126 126 126 HOH WAT . C 3 HOH A 127 127 127 HOH WAT . C 3 HOH A 128 128 128 HOH WAT . C 3 HOH A 129 129 129 HOH WAT . C 3 HOH A 130 130 130 HOH WAT . C 3 HOH A 131 131 131 HOH WAT . C 3 HOH A 132 132 132 HOH WAT . C 3 HOH A 133 133 133 HOH WAT . C 3 HOH A 134 134 134 HOH WAT . C 3 HOH A 135 135 135 HOH WAT . C 3 HOH A 136 136 136 HOH WAT . C 3 HOH A 137 137 137 HOH WAT . C 3 HOH A 138 138 138 HOH WAT . C 3 HOH A 139 139 139 HOH WAT . C 3 HOH A 140 140 140 HOH WAT . C 3 HOH A 141 141 141 HOH WAT . C 3 HOH A 142 142 142 HOH WAT . C 3 HOH A 143 143 143 HOH WAT . C 3 HOH A 144 144 144 HOH WAT . C 3 HOH A 145 145 145 HOH WAT . C 3 HOH A 146 146 146 HOH WAT . C 3 HOH A 147 147 147 HOH WAT . C 3 HOH A 148 148 148 HOH WAT . C 3 HOH A 149 149 149 HOH WAT . C 3 HOH A 150 150 150 HOH WAT . C 3 HOH A 151 151 151 HOH WAT . C 3 HOH A 152 152 152 HOH WAT . C 3 HOH A 153 153 153 HOH WAT . C 3 HOH A 154 154 154 HOH WAT . C 3 HOH A 155 155 155 HOH WAT . C 3 HOH A 156 156 156 HOH WAT . C 3 HOH A 157 157 157 HOH WAT . C 3 HOH A 158 158 158 HOH WAT . C 3 HOH A 159 159 159 HOH WAT . C 3 HOH A 160 160 160 HOH WAT . C 3 HOH A 161 161 161 HOH WAT . C 3 HOH A 162 162 162 HOH WAT . C 3 HOH A 163 163 163 HOH WAT . C 3 HOH A 164 164 164 HOH WAT . C 3 HOH A 165 165 165 HOH WAT . C 3 HOH A 166 166 166 HOH WAT . C 3 HOH A 167 167 167 HOH WAT . C 3 HOH A 168 168 168 HOH WAT . C 3 HOH A 169 169 169 HOH WAT . C 3 HOH A 170 170 170 HOH WAT . C 3 HOH A 171 171 171 HOH WAT . C 3 HOH A 172 172 172 HOH WAT . C 3 HOH A 173 173 173 HOH WAT . C 3 HOH A 174 174 174 HOH WAT . C 3 HOH A 175 175 175 HOH WAT . C 3 HOH A 176 176 176 HOH WAT . C 3 HOH A 177 177 177 HOH WAT . C 3 HOH A 178 178 178 HOH WAT . C 3 HOH A 179 179 179 HOH WAT . C 3 HOH A 180 180 180 HOH WAT . C 3 HOH A 181 181 181 HOH WAT . C 3 HOH A 182 182 182 HOH WAT . C 3 HOH A 183 183 183 HOH WAT . C 3 HOH A 184 184 184 HOH WAT . C 3 HOH A 185 185 185 HOH WAT . C 3 HOH A 186 186 186 HOH WAT . C 3 HOH A 187 187 187 HOH WAT . C 3 HOH A 188 188 188 HOH WAT . C 3 HOH A 189 189 189 HOH WAT . C 3 HOH A 190 190 190 HOH WAT . C 3 HOH A 191 191 191 HOH WAT . C 3 HOH A 192 192 192 HOH WAT . C 3 HOH A 193 193 193 HOH WAT . C 3 HOH A 194 194 194 HOH WAT . C 3 HOH A 195 195 195 HOH WAT . C 3 HOH A 196 196 196 HOH WAT . C 3 HOH A 197 197 197 HOH WAT . C 3 HOH A 198 198 198 HOH WAT . C 3 HOH A 199 199 199 HOH WAT . C 3 HOH A 200 200 200 HOH WAT . C 3 HOH A 201 201 201 HOH WAT . C 3 HOH A 202 202 202 HOH WAT . C 3 HOH A 203 203 203 HOH WAT . C 3 HOH A 204 204 204 HOH WAT . C 3 HOH A 205 205 205 HOH WAT . C 3 HOH A 206 206 206 HOH WAT . C 3 HOH A 207 207 207 HOH WAT . C 3 HOH A 208 208 208 HOH WAT . C 3 HOH A 209 209 209 HOH WAT . C 3 HOH A 210 210 210 HOH WAT . C 3 HOH A 211 211 211 HOH WAT . C 3 HOH A 212 212 212 HOH WAT . C 3 HOH A 213 213 213 HOH WAT . C 3 HOH A 214 214 214 HOH WAT . C 3 HOH A 215 215 215 HOH WAT . C 3 HOH A 216 216 216 HOH WAT . C 3 HOH A 217 217 217 HOH WAT . C 3 HOH A 218 218 218 HOH WAT . C 3 HOH A 219 219 219 HOH WAT . C 3 HOH A 220 220 220 HOH WAT . C 3 HOH A 221 221 221 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SLB . . . B 2 9.3 1.958 85.558 0.5 64.96 ? C1 SLB 1400 A 1 HETATM 2 C C2 SLB . . . B 2 9.972 0.602 85.308 0.5 65.19 ? C2 SLB 1400 A 1 HETATM 3 C C3 SLB . . . B 2 10.944 0.498 84.164 0.5 66.07 ? C3 SLB 1400 A 1 HETATM 4 C C4 SLB . . . B 2 11.067 -0.876 83.525 0.5 66.74 ? C4 SLB 1400 A 1 HETATM 5 C C5 SLB . . . B 2 9.835 -1.784 83.64 0.5 67.38 ? C5 SLB 1400 A 1 HETATM 6 C C6 SLB . . . B 2 9.076 -1.539 84.958 0.5 67.8 ? C6 SLB 1400 A 1 HETATM 7 C C7 SLB . . . B 2 7.767 -2.25 85.291 0.5 68.5 ? C7 SLB 1400 A 1 HETATM 8 C C8 SLB . . . B 2 7.047 -1.544 86.459 0.5 69.24 ? C8 SLB 1400 A 1 HETATM 9 C C9 SLB . . . B 2 5.764 -2.186 86.92 0.5 69.71 ? C9 SLB 1400 A 1 HETATM 10 C C10 SLB . . . B 2 11.128 -3.831 84.29 0.5 68.03 ? C10 SLB 1400 A 1 HETATM 11 C C11 SLB . . . B 2 11.343 -5.3 83.996 0.5 67.15 ? C11 SLB 1400 A 1 HETATM 12 N N5 SLB . . . B 2 10.287 -3.17 83.496 0.5 67.76 ? N5 SLB 1400 A 1 HETATM 13 O O1A SLB . . . B 2 9.893 2.915 84.896 0.5 64.17 ? O1A SLB 1400 A 1 HETATM 14 O O1B SLB . . . B 2 8.329 2.027 86.251 0.5 64.96 ? O1B SLB 1400 A 1 HETATM 15 O O2 SLB . . . B 2 10.565 0.105 86.463 0.5 64.11 ? O2 SLB 1400 A 1 HETATM 16 O O4 SLB . . . B 2 11.298 -0.68 82.121 0.5 66.67 ? O4 SLB 1400 A 1 HETATM 17 O O6 SLB . . . B 2 8.782 -0.112 84.957 0.5 66.33 ? O6 SLB 1400 A 1 HETATM 18 O O7 SLB . . . B 2 6.864 -2.387 84.199 0.5 67.45 ? O7 SLB 1400 A 1 HETATM 19 O O8 SLB . . . B 2 7.974 -1.498 87.546 0.5 69.38 ? O8 SLB 1400 A 1 HETATM 20 O O9 SLB . . . B 2 5.225 -1.508 88.064 0.5 69.31 ? O9 SLB 1400 A 1 HETATM 21 O O10 SLB . . . B 2 11.753 -3.324 85.263 0.5 67.78 ? O10 SLB 1400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #