data_1DFX
#
_model_server_result.job_id            bpFJpBzF56YUXsPkawY0pQ 
_model_server_result.datetime_utc      '2024-10-24 04:29:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dfx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":131}' 
#
_entry.id    1DFX 
#
_exptl.entry_id    1DFX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DFX 
_cell.length_a            112.5 
_cell.length_b            112.5 
_cell.length_c            63.2 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DFX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 63.2 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 9 A CYS 9 1_555 B FE FE . A FE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc2 A SG CYS 12 A CYS 12 1_555 B FE FE . A FE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc3 A SG CYS 28 A CYS 28 1_555 B FE FE . A FE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc4 A SG CYS 29 A CYS 29 1_555 B FE FE . A FE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc5 A NE2 HIS 48 A HIS 48 1_555 C FE FE . A FE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc6 A NE2 HIS 68 A HIS 68 1_555 C FE FE . A FE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc7 A NE2 HIS 74 A HIS 74 1_555 C FE FE . A FE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc8 A O SER 87 A SER 87 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc9 A OG SER 87 A SER 87 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? 
metalc ? metalc10 A O SER 87 A SER 87 4_556 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc11 A OG SER 87 A SER 87 4_556 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? 
metalc ? metalc12 A OG1 THR 89 A THR 89 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? 
metalc ? metalc13 A OG1 THR 89 A THR 89 4_556 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? 
metalc ? metalc14 A SG CYS 115 A CYS 115 1_555 C FE FE . A FE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc15 A ND1 HIS 118 A HIS 118 1_555 C FE FE . A FE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc16 D CA CA . A CA 150 1_555 E O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc17 D CA CA . A CA 150 1_555 E O HOH . A HOH 253 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DFX 
_atom_sites.fract_transf_matrix[1][1]    0.008889 
_atom_sites.fract_transf_matrix[1][2]    0.005132 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015823 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 131 131 FE FE . 
C 2 FE A 1 132 132 FE FE . 
D 3 CA A 1 150 150 CA CA . 
E 4 HOH A 1 200 200 HOH HOH . 
E 4 HOH A 2 201 201 HOH HOH . 
E 4 HOH A 3 202 202 HOH HOH . 
E 4 HOH A 4 203 203 HOH HOH . 
E 4 HOH A 5 204 204 HOH HOH . 
E 4 HOH A 6 205 205 HOH HOH . 
E 4 HOH A 7 206 206 HOH HOH . 
E 4 HOH A 8 207 207 HOH HOH . 
E 4 HOH A 9 208 208 HOH HOH . 
E 4 HOH A 10 209 209 HOH HOH . 
E 4 HOH A 11 210 210 HOH HOH . 
E 4 HOH A 12 211 211 HOH HOH . 
E 4 HOH A 13 212 212 HOH HOH . 
E 4 HOH A 14 213 213 HOH HOH . 
E 4 HOH A 15 214 214 HOH HOH . 
E 4 HOH A 16 215 215 HOH HOH . 
E 4 HOH A 17 216 216 HOH HOH . 
E 4 HOH A 18 217 217 HOH HOH . 
E 4 HOH A 19 219 219 HOH HOH . 
E 4 HOH A 20 222 222 HOH HOH . 
E 4 HOH A 21 223 223 HOH HOH . 
E 4 HOH A 22 225 225 HOH HOH . 
E 4 HOH A 23 226 226 HOH HOH . 
E 4 HOH A 24 227 227 HOH HOH . 
E 4 HOH A 25 228 228 HOH HOH . 
E 4 HOH A 26 229 229 HOH HOH . 
E 4 HOH A 27 230 230 HOH HOH . 
E 4 HOH A 28 231 231 HOH HOH . 
E 4 HOH A 29 232 232 HOH HOH . 
E 4 HOH A 30 233 233 HOH HOH . 
E 4 HOH A 31 235 235 HOH HOH . 
E 4 HOH A 32 236 236 HOH HOH . 
E 4 HOH A 33 237 237 HOH HOH . 
E 4 HOH A 34 238 238 HOH HOH . 
E 4 HOH A 35 239 239 HOH HOH . 
E 4 HOH A 36 241 241 HOH HOH . 
E 4 HOH A 37 242 242 HOH HOH . 
E 4 HOH A 38 243 243 HOH HOH . 
E 4 HOH A 39 247 247 HOH HOH . 
E 4 HOH A 40 248 248 HOH HOH . 
E 4 HOH A 41 249 249 HOH HOH . 
E 4 HOH A 42 250 250 HOH HOH . 
E 4 HOH A 43 251 251 HOH HOH . 
E 4 HOH A 44 252 252 HOH HOH . 
E 4 HOH A 45 253 253 HOH HOH . 
E 4 HOH A 46 255 255 HOH HOH . 
E 4 HOH A 47 256 256 HOH HOH . 
E 4 HOH A 48 259 259 HOH HOH . 
E 4 HOH A 49 264 264 HOH HOH . 
E 4 HOH A 50 265 265 HOH HOH . 
E 4 HOH A 51 268 268 HOH HOH . 
E 4 HOH A 52 271 271 HOH HOH . 
E 4 HOH A 53 275 275 HOH HOH . 
E 4 HOH A 54 276 276 HOH HOH . 
E 4 HOH A 55 277 277 HOH HOH . 
E 4 HOH A 56 278 278 HOH HOH . 
E 4 HOH A 57 283 283 HOH HOH . 
E 4 HOH A 58 285 285 HOH HOH . 
E 4 HOH A 59 289 289 HOH HOH . 
E 4 HOH A 60 292 292 HOH HOH . 
E 4 HOH A 61 293 293 HOH HOH . 
E 4 HOH A 62 294 294 HOH HOH . 
E 4 HOH A 63 295 295 HOH HOH . 
E 4 HOH A 64 296 296 HOH HOH . 
E 4 HOH A 65 297 297 HOH HOH . 
E 4 HOH A 66 299 299 HOH HOH . 
E 4 HOH A 67 300 300 HOH HOH . 
E 4 HOH A 68 302 302 HOH HOH . 
E 4 HOH A 69 305 305 HOH HOH . 
E 4 HOH A 70 311 311 HOH HOH . 
E 4 HOH A 71 318 318 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               36.972 
_atom_site.Cartn_y               62.345 
_atom_site.Cartn_z               39.427 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.82 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           131 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#