data_1DG5 # _model_server_result.job_id rUGomO95NPDvVzkSyRL5oA _model_server_result.datetime_utc '2024-12-01 12:06:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1DG5 # _exptl.entry_id 1DG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DG5 _cell.length_a 60.75 _cell.length_b 60.75 _cell.length_c 59.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 250 n n PA O2A NDP sing 251 n n PA O5B NDP sing 252 n n PA O3 NDP sing 253 n n O2A HOA2 NDP sing 254 n n O5B C5B NDP sing 255 n n C5B C4B NDP sing 256 n n C5B H51A NDP sing 257 n n C5B H52A NDP sing 258 n n C4B O4B NDP sing 259 n n C4B C3B NDP sing 260 n n C4B H4B NDP sing 261 n n O4B C1B NDP sing 262 n n C3B O3B NDP sing 263 n n C3B C2B NDP sing 264 n n C3B H3B NDP sing 265 n n O3B HO3A NDP sing 266 n n C2B O2B NDP sing 267 n n C2B C1B NDP sing 268 n n C2B H2B NDP sing 269 n n O2B P2B NDP sing 270 n n C1B N9A NDP sing 271 n n C1B H1B NDP sing 272 n n N9A C8A NDP sing 273 n y N9A C4A NDP sing 274 n y C8A N7A NDP doub 275 n y C8A H8A NDP sing 276 n n N7A C5A NDP sing 277 n y C5A C6A NDP sing 278 n y C5A C4A NDP doub 279 n y C6A N6A NDP sing 280 n n C6A N1A NDP doub 281 n y N6A H61A NDP sing 282 n n N6A H62A NDP sing 283 n n N1A C2A NDP sing 284 n y C2A N3A NDP doub 285 n y C2A H2A NDP sing 286 n n N3A C4A NDP sing 287 n y O3 PN NDP sing 288 n n PN O1N NDP doub 289 n n PN O2N NDP sing 290 n n PN O5D NDP sing 291 n n O2N H21N NDP sing 292 n n O5D C5D NDP sing 293 n n C5D C4D NDP sing 294 n n C5D H51N NDP sing 295 n n C5D H52N NDP sing 296 n n C4D O4D NDP sing 297 n n C4D C3D NDP sing 298 n n C4D H4D NDP sing 299 n n O4D C1D NDP sing 300 n n C3D O3D NDP sing 301 n n C3D C2D NDP sing 302 n n C3D H3D NDP sing 303 n n O3D HO3N NDP sing 304 n n C2D O2D NDP sing 305 n n C2D C1D NDP sing 306 n n C2D H2D NDP sing 307 n n O2D HO2N NDP sing 308 n n C1D N1N NDP sing 309 n n C1D H1D NDP sing 310 n n N1N C2N NDP sing 311 n n N1N C6N NDP sing 312 n n C2N C3N NDP doub 313 n n C2N H2N NDP sing 314 n n C3N C7N NDP sing 315 n n C3N C4N NDP sing 316 n n C7N O7N NDP doub 317 n n C7N N7N NDP sing 318 n n N7N H71N NDP sing 319 n n N7N H72N NDP sing 320 n n C4N C5N NDP sing 321 n n C4N H41N NDP sing 322 n n C4N H42N NDP sing 323 n n C5N C6N NDP doub 324 n n C5N H5N NDP sing 325 n n C6N H6N NDP sing 326 n n P2B O1X NDP doub 327 n n P2B O2X NDP sing 328 n n P2B O3X NDP sing 329 n n O2X HOP2 NDP sing 330 n n O3X HOP3 NDP sing 331 n n # _atom_sites.entry_id 1DG5 _atom_sites.fract_transf_matrix[1][1] 0.016461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 200 1 NDP NDP . C 3 TOP A 1 201 2 TOP TMP . D 4 GOL A 1 202 1 GOL GOL . E 4 GOL A 1 203 2 GOL GOL . F 4 GOL A 1 204 3 GOL GOL . G 5 HOH A 1 205 1 HOH WAT . G 5 HOH A 2 206 2 HOH WAT . G 5 HOH A 3 207 3 HOH WAT . G 5 HOH A 4 208 4 HOH WAT . G 5 HOH A 5 209 5 HOH WAT . G 5 HOH A 6 210 6 HOH WAT . G 5 HOH A 7 211 7 HOH WAT . G 5 HOH A 8 212 8 HOH WAT . G 5 HOH A 9 213 9 HOH WAT . G 5 HOH A 10 214 10 HOH WAT . G 5 HOH A 11 215 11 HOH WAT . G 5 HOH A 12 216 12 HOH WAT . G 5 HOH A 13 217 13 HOH WAT . G 5 HOH A 14 218 14 HOH WAT . G 5 HOH A 15 219 15 HOH WAT . G 5 HOH A 16 220 16 HOH WAT . G 5 HOH A 17 221 17 HOH WAT . G 5 HOH A 18 222 18 HOH WAT . G 5 HOH A 19 223 19 HOH WAT . G 5 HOH A 20 224 20 HOH WAT . G 5 HOH A 21 225 21 HOH WAT . G 5 HOH A 22 226 22 HOH WAT . G 5 HOH A 23 227 23 HOH WAT . G 5 HOH A 24 228 24 HOH WAT . G 5 HOH A 25 229 25 HOH WAT . G 5 HOH A 26 230 26 HOH WAT . G 5 HOH A 27 231 27 HOH WAT . G 5 HOH A 28 232 28 HOH WAT . G 5 HOH A 29 233 29 HOH WAT . G 5 HOH A 30 234 30 HOH WAT . G 5 HOH A 31 235 31 HOH WAT . G 5 HOH A 32 236 32 HOH WAT . G 5 HOH A 33 237 33 HOH WAT . G 5 HOH A 34 238 34 HOH WAT . G 5 HOH A 35 239 35 HOH WAT . G 5 HOH A 36 240 36 HOH WAT . G 5 HOH A 37 241 37 HOH WAT . G 5 HOH A 38 242 38 HOH WAT . G 5 HOH A 39 243 39 HOH WAT . G 5 HOH A 40 244 40 HOH WAT . G 5 HOH A 41 245 41 HOH WAT . G 5 HOH A 42 246 42 HOH WAT . G 5 HOH A 43 247 43 HOH WAT . G 5 HOH A 44 248 44 HOH WAT . G 5 HOH A 45 249 45 HOH WAT . G 5 HOH A 46 250 46 HOH WAT . G 5 HOH A 47 251 47 HOH WAT . G 5 HOH A 48 252 48 HOH WAT . G 5 HOH A 49 253 49 HOH WAT . G 5 HOH A 50 254 50 HOH WAT . G 5 HOH A 51 255 51 HOH WAT . G 5 HOH A 52 256 52 HOH WAT . G 5 HOH A 53 257 53 HOH WAT . G 5 HOH A 54 258 54 HOH WAT . G 5 HOH A 55 259 55 HOH WAT . G 5 HOH A 56 260 56 HOH WAT . G 5 HOH A 57 261 57 HOH WAT . G 5 HOH A 58 262 58 HOH WAT . G 5 HOH A 59 263 59 HOH WAT . G 5 HOH A 60 264 60 HOH WAT . G 5 HOH A 61 265 61 HOH WAT . G 5 HOH A 62 266 62 HOH WAT . G 5 HOH A 63 267 63 HOH WAT . G 5 HOH A 64 268 64 HOH WAT . G 5 HOH A 65 269 65 HOH WAT . G 5 HOH A 66 270 66 HOH WAT . G 5 HOH A 67 271 67 HOH WAT . G 5 HOH A 68 272 68 HOH WAT . G 5 HOH A 69 273 69 HOH WAT . G 5 HOH A 70 274 70 HOH WAT . G 5 HOH A 71 275 71 HOH WAT . G 5 HOH A 72 276 72 HOH WAT . G 5 HOH A 73 277 73 HOH WAT . G 5 HOH A 74 278 74 HOH WAT . G 5 HOH A 75 279 75 HOH WAT . G 5 HOH A 76 280 76 HOH WAT . G 5 HOH A 77 281 77 HOH WAT . G 5 HOH A 78 282 78 HOH WAT . G 5 HOH A 79 283 79 HOH WAT . G 5 HOH A 80 284 80 HOH WAT . G 5 HOH A 81 285 81 HOH WAT . G 5 HOH A 82 286 82 HOH WAT . G 5 HOH A 83 287 83 HOH WAT . G 5 HOH A 84 288 84 HOH WAT . G 5 HOH A 85 289 85 HOH WAT . G 5 HOH A 86 290 86 HOH WAT . G 5 HOH A 87 291 87 HOH WAT . G 5 HOH A 88 292 88 HOH WAT . G 5 HOH A 89 293 89 HOH WAT . G 5 HOH A 90 294 90 HOH WAT . G 5 HOH A 91 295 91 HOH WAT . G 5 HOH A 92 296 92 HOH WAT . G 5 HOH A 93 297 93 HOH WAT . G 5 HOH A 94 298 94 HOH WAT . G 5 HOH A 95 299 95 HOH WAT . G 5 HOH A 96 300 96 HOH WAT . G 5 HOH A 97 301 97 HOH WAT . G 5 HOH A 98 302 98 HOH WAT . G 5 HOH A 99 303 99 HOH WAT . G 5 HOH A 100 304 100 HOH WAT . G 5 HOH A 101 305 101 HOH WAT . G 5 HOH A 102 306 102 HOH WAT . G 5 HOH A 103 307 103 HOH WAT . G 5 HOH A 104 308 104 HOH WAT . G 5 HOH A 105 309 105 HOH WAT . G 5 HOH A 106 310 106 HOH WAT . G 5 HOH A 107 311 107 HOH WAT . G 5 HOH A 108 312 108 HOH WAT . G 5 HOH A 109 313 109 HOH WAT . G 5 HOH A 110 314 110 HOH WAT . G 5 HOH A 111 315 111 HOH WAT . G 5 HOH A 112 316 112 HOH WAT . G 5 HOH A 113 317 113 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 11.683 16.672 17.257 1 16.17 ? PA NDP 200 A 1 HETATM 2 O O1A NDP . . . B 2 11.968 15.881 16.054 1 17.13 ? O1A NDP 200 A 1 HETATM 3 O O2A NDP . . . B 2 10.561 17.608 17.056 1 21.57 ? O2A NDP 200 A 1 HETATM 4 O O5B NDP . . . B 2 11.32 15.721 18.488 1 18.55 ? O5B NDP 200 A 1 HETATM 5 C C5B NDP . . . B 2 12.32 14.734 18.899 1 20.91 ? C5B NDP 200 A 1 HETATM 6 C C4B NDP . . . B 2 11.533 13.871 19.902 1 20.97 ? C4B NDP 200 A 1 HETATM 7 O O4B NDP . . . B 2 10.684 12.995 19.135 1 22.38 ? O4B NDP 200 A 1 HETATM 8 C C3B NDP . . . B 2 12.399 12.922 20.75 1 22.14 ? C3B NDP 200 A 1 HETATM 9 O O3B NDP . . . B 2 12.984 13.672 21.791 1 21.98 ? O3B NDP 200 A 1 HETATM 10 C C2B NDP . . . B 2 11.281 11.9 21.134 1 23.78 ? C2B NDP 200 A 1 HETATM 11 O O2B NDP . . . B 2 10.384 12.325 22.116 1 24.37 ? O2B NDP 200 A 1 HETATM 12 C C1B NDP . . . B 2 10.61 11.736 19.814 1 23.67 ? C1B NDP 200 A 1 HETATM 13 N N9A NDP . . . B 2 11.212 10.736 18.989 1 25.36 ? N9A NDP 200 A 1 HETATM 14 C C8A NDP . . . B 2 12.255 10.874 18.122 1 25.71 ? C8A NDP 200 A 1 HETATM 15 N N7A NDP . . . B 2 12.53 9.75 17.478 1 27.9 ? N7A NDP 200 A 1 HETATM 16 C C5A NDP . . . B 2 11.607 8.856 17.96 1 26.39 ? C5A NDP 200 A 1 HETATM 17 C C6A NDP . . . B 2 11.397 7.483 17.657 1 26.88 ? C6A NDP 200 A 1 HETATM 18 N N6A NDP . . . B 2 12.18 6.868 16.757 1 27.81 ? N6A NDP 200 A 1 HETATM 19 N N1A NDP . . . B 2 10.391 6.852 18.318 1 25.35 ? N1A NDP 200 A 1 HETATM 20 C C2A NDP . . . B 2 9.653 7.57 19.228 1 24.43 ? C2A NDP 200 A 1 HETATM 21 N N3A NDP . . . B 2 9.782 8.825 19.565 1 25.19 ? N3A NDP 200 A 1 HETATM 22 C C4A NDP . . . B 2 10.785 9.419 18.876 1 25.76 ? C4A NDP 200 A 1 HETATM 23 O O3 NDP . . . B 2 12.926 17.425 17.749 1 19.85 ? O3 NDP 200 A 1 HETATM 24 P PN NDP . . . B 2 14.183 18.237 17.266 1 17.68 ? PN NDP 200 A 1 HETATM 25 O O1N NDP . . . B 2 14.989 18.691 18.408 1 16.52 ? O1N NDP 200 A 1 HETATM 26 O O2N NDP . . . B 2 14.959 17.464 16.293 1 14.37 ? O2N NDP 200 A 1 HETATM 27 O O5D NDP . . . B 2 13.528 19.508 16.456 1 19.07 ? O5D NDP 200 A 1 HETATM 28 C C5D NDP . . . B 2 12.904 20.552 17.255 1 20.2 ? C5D NDP 200 A 1 HETATM 29 C C4D NDP . . . B 2 13.359 21.892 16.624 1 22.32 ? C4D NDP 200 A 1 HETATM 30 O O4D NDP . . . B 2 12.835 21.993 15.264 1 21.69 ? O4D NDP 200 A 1 HETATM 31 C C3D NDP . . . B 2 12.815 23.124 17.38 1 23.29 ? C3D NDP 200 A 1 HETATM 32 O O3D NDP . . . B 2 13.879 24.069 17.498 1 24.85 ? O3D NDP 200 A 1 HETATM 33 C C2D NDP . . . B 2 11.659 23.563 16.456 1 23.04 ? C2D NDP 200 A 1 HETATM 34 O O2D NDP . . . B 2 11.354 24.941 16.678 1 24.85 ? O2D NDP 200 A 1 HETATM 35 C C1D NDP . . . B 2 12.22 23.28 15.076 1 21.58 ? C1D NDP 200 A 1 HETATM 36 N N1N NDP . . . B 2 11.141 23.184 14.028 1 21.13 ? N1N NDP 200 A 1 HETATM 37 C C2N NDP . . . B 2 11.357 23.942 12.848 1 18.83 ? C2N NDP 200 A 1 HETATM 38 C C3N NDP . . . B 2 10.377 23.857 11.858 1 18.06 ? C3N NDP 200 A 1 HETATM 39 C C7N NDP . . . B 2 10.625 24.69 10.554 1 17.26 ? C7N NDP 200 A 1 HETATM 40 O O7N NDP . . . B 2 9.898 24.483 9.608 1 18.29 ? O7N NDP 200 A 1 HETATM 41 N N7N NDP . . . B 2 11.644 25.588 10.576 1 17.72 ? N7N NDP 200 A 1 HETATM 42 C C4N NDP . . . B 2 9.176 23.072 11.942 1 19.14 ? C4N NDP 200 A 1 HETATM 43 C C5N NDP . . . B 2 9.091 22.364 13.197 1 18.1 ? C5N NDP 200 A 1 HETATM 44 C C6N NDP . . . B 2 10.002 22.389 14.211 1 19.1 ? C6N NDP 200 A 1 HETATM 45 P P2B NDP . . . B 2 10.73 11.913 23.712 1 26.81 ? P2B NDP 200 A 1 HETATM 46 O O1X NDP . . . B 2 12.02 12.502 23.995 1 27.22 ? O1X NDP 200 A 1 HETATM 47 O O2X NDP . . . B 2 9.519 12.57 24.312 1 25.32 ? O2X NDP 200 A 1 HETATM 48 O O3X NDP . . . B 2 10.706 10.44 23.639 1 27.74 ? O3X NDP 200 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #