data_1DG5 # _model_server_result.job_id 0ict4Su7U91Jw3YIdNLl3Q _model_server_result.datetime_utc '2024-11-29 00:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 1DG5 # _exptl.entry_id 1DG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DG5 _cell.length_a 60.75 _cell.length_b 60.75 _cell.length_c 59.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1DG5 _atom_sites.fract_transf_matrix[1][1] 0.016461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 200 1 NDP NDP . C 3 TOP A 1 201 2 TOP TMP . D 4 GOL A 1 202 1 GOL GOL . E 4 GOL A 1 203 2 GOL GOL . F 4 GOL A 1 204 3 GOL GOL . G 5 HOH A 1 205 1 HOH WAT . G 5 HOH A 2 206 2 HOH WAT . G 5 HOH A 3 207 3 HOH WAT . G 5 HOH A 4 208 4 HOH WAT . G 5 HOH A 5 209 5 HOH WAT . G 5 HOH A 6 210 6 HOH WAT . G 5 HOH A 7 211 7 HOH WAT . G 5 HOH A 8 212 8 HOH WAT . G 5 HOH A 9 213 9 HOH WAT . G 5 HOH A 10 214 10 HOH WAT . G 5 HOH A 11 215 11 HOH WAT . G 5 HOH A 12 216 12 HOH WAT . G 5 HOH A 13 217 13 HOH WAT . G 5 HOH A 14 218 14 HOH WAT . G 5 HOH A 15 219 15 HOH WAT . G 5 HOH A 16 220 16 HOH WAT . G 5 HOH A 17 221 17 HOH WAT . G 5 HOH A 18 222 18 HOH WAT . G 5 HOH A 19 223 19 HOH WAT . G 5 HOH A 20 224 20 HOH WAT . G 5 HOH A 21 225 21 HOH WAT . G 5 HOH A 22 226 22 HOH WAT . G 5 HOH A 23 227 23 HOH WAT . G 5 HOH A 24 228 24 HOH WAT . G 5 HOH A 25 229 25 HOH WAT . G 5 HOH A 26 230 26 HOH WAT . G 5 HOH A 27 231 27 HOH WAT . G 5 HOH A 28 232 28 HOH WAT . G 5 HOH A 29 233 29 HOH WAT . G 5 HOH A 30 234 30 HOH WAT . G 5 HOH A 31 235 31 HOH WAT . G 5 HOH A 32 236 32 HOH WAT . G 5 HOH A 33 237 33 HOH WAT . G 5 HOH A 34 238 34 HOH WAT . G 5 HOH A 35 239 35 HOH WAT . G 5 HOH A 36 240 36 HOH WAT . G 5 HOH A 37 241 37 HOH WAT . G 5 HOH A 38 242 38 HOH WAT . G 5 HOH A 39 243 39 HOH WAT . G 5 HOH A 40 244 40 HOH WAT . G 5 HOH A 41 245 41 HOH WAT . G 5 HOH A 42 246 42 HOH WAT . G 5 HOH A 43 247 43 HOH WAT . G 5 HOH A 44 248 44 HOH WAT . G 5 HOH A 45 249 45 HOH WAT . G 5 HOH A 46 250 46 HOH WAT . G 5 HOH A 47 251 47 HOH WAT . G 5 HOH A 48 252 48 HOH WAT . G 5 HOH A 49 253 49 HOH WAT . G 5 HOH A 50 254 50 HOH WAT . G 5 HOH A 51 255 51 HOH WAT . G 5 HOH A 52 256 52 HOH WAT . G 5 HOH A 53 257 53 HOH WAT . G 5 HOH A 54 258 54 HOH WAT . G 5 HOH A 55 259 55 HOH WAT . G 5 HOH A 56 260 56 HOH WAT . G 5 HOH A 57 261 57 HOH WAT . G 5 HOH A 58 262 58 HOH WAT . G 5 HOH A 59 263 59 HOH WAT . G 5 HOH A 60 264 60 HOH WAT . G 5 HOH A 61 265 61 HOH WAT . G 5 HOH A 62 266 62 HOH WAT . G 5 HOH A 63 267 63 HOH WAT . G 5 HOH A 64 268 64 HOH WAT . G 5 HOH A 65 269 65 HOH WAT . G 5 HOH A 66 270 66 HOH WAT . G 5 HOH A 67 271 67 HOH WAT . G 5 HOH A 68 272 68 HOH WAT . G 5 HOH A 69 273 69 HOH WAT . G 5 HOH A 70 274 70 HOH WAT . G 5 HOH A 71 275 71 HOH WAT . G 5 HOH A 72 276 72 HOH WAT . G 5 HOH A 73 277 73 HOH WAT . G 5 HOH A 74 278 74 HOH WAT . G 5 HOH A 75 279 75 HOH WAT . G 5 HOH A 76 280 76 HOH WAT . G 5 HOH A 77 281 77 HOH WAT . G 5 HOH A 78 282 78 HOH WAT . G 5 HOH A 79 283 79 HOH WAT . G 5 HOH A 80 284 80 HOH WAT . G 5 HOH A 81 285 81 HOH WAT . G 5 HOH A 82 286 82 HOH WAT . G 5 HOH A 83 287 83 HOH WAT . G 5 HOH A 84 288 84 HOH WAT . G 5 HOH A 85 289 85 HOH WAT . G 5 HOH A 86 290 86 HOH WAT . G 5 HOH A 87 291 87 HOH WAT . G 5 HOH A 88 292 88 HOH WAT . G 5 HOH A 89 293 89 HOH WAT . G 5 HOH A 90 294 90 HOH WAT . G 5 HOH A 91 295 91 HOH WAT . G 5 HOH A 92 296 92 HOH WAT . G 5 HOH A 93 297 93 HOH WAT . G 5 HOH A 94 298 94 HOH WAT . G 5 HOH A 95 299 95 HOH WAT . G 5 HOH A 96 300 96 HOH WAT . G 5 HOH A 97 301 97 HOH WAT . G 5 HOH A 98 302 98 HOH WAT . G 5 HOH A 99 303 99 HOH WAT . G 5 HOH A 100 304 100 HOH WAT . G 5 HOH A 101 305 101 HOH WAT . G 5 HOH A 102 306 102 HOH WAT . G 5 HOH A 103 307 103 HOH WAT . G 5 HOH A 104 308 104 HOH WAT . G 5 HOH A 105 309 105 HOH WAT . G 5 HOH A 106 310 106 HOH WAT . G 5 HOH A 107 311 107 HOH WAT . G 5 HOH A 108 312 108 HOH WAT . G 5 HOH A 109 313 109 HOH WAT . G 5 HOH A 110 314 110 HOH WAT . G 5 HOH A 111 315 111 HOH WAT . G 5 HOH A 112 316 112 HOH WAT . G 5 HOH A 113 317 113 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 18.03 18.727 16.725 1 28.38 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 4 17.513 17.993 15.588 1 23.94 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 4 18.915 17.766 17.564 1 30.26 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 4 18.273 16.633 18.134 1 32.36 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 4 20.012 18.395 18.441 1 31 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 4 20.696 17.454 19.236 1 32.11 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #