data_1DG8 # _model_server_result.job_id syzN0hYCbk3jyyVUaNo4IQ _model_server_result.datetime_utc '2024-11-25 12:05:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":160}' # _entry.id 1DG8 # _exptl.entry_id 1DG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DG8 _cell.length_a 60.38 _cell.length_b 60.38 _cell.length_c 58.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 250 n n PA O2A NDP sing 251 n n PA O5B NDP sing 252 n n PA O3 NDP sing 253 n n O2A HOA2 NDP sing 254 n n O5B C5B NDP sing 255 n n C5B C4B NDP sing 256 n n C5B H51A NDP sing 257 n n C5B H52A NDP sing 258 n n C4B O4B NDP sing 259 n n C4B C3B NDP sing 260 n n C4B H4B NDP sing 261 n n O4B C1B NDP sing 262 n n C3B O3B NDP sing 263 n n C3B C2B NDP sing 264 n n C3B H3B NDP sing 265 n n O3B HO3A NDP sing 266 n n C2B O2B NDP sing 267 n n C2B C1B NDP sing 268 n n C2B H2B NDP sing 269 n n O2B P2B NDP sing 270 n n C1B N9A NDP sing 271 n n C1B H1B NDP sing 272 n n N9A C8A NDP sing 273 n y N9A C4A NDP sing 274 n y C8A N7A NDP doub 275 n y C8A H8A NDP sing 276 n n N7A C5A NDP sing 277 n y C5A C6A NDP sing 278 n y C5A C4A NDP doub 279 n y C6A N6A NDP sing 280 n n C6A N1A NDP doub 281 n y N6A H61A NDP sing 282 n n N6A H62A NDP sing 283 n n N1A C2A NDP sing 284 n y C2A N3A NDP doub 285 n y C2A H2A NDP sing 286 n n N3A C4A NDP sing 287 n y O3 PN NDP sing 288 n n PN O1N NDP doub 289 n n PN O2N NDP sing 290 n n PN O5D NDP sing 291 n n O2N H21N NDP sing 292 n n O5D C5D NDP sing 293 n n C5D C4D NDP sing 294 n n C5D H51N NDP sing 295 n n C5D H52N NDP sing 296 n n C4D O4D NDP sing 297 n n C4D C3D NDP sing 298 n n C4D H4D NDP sing 299 n n O4D C1D NDP sing 300 n n C3D O3D NDP sing 301 n n C3D C2D NDP sing 302 n n C3D H3D NDP sing 303 n n O3D HO3N NDP sing 304 n n C2D O2D NDP sing 305 n n C2D C1D NDP sing 306 n n C2D H2D NDP sing 307 n n O2D HO2N NDP sing 308 n n C1D N1N NDP sing 309 n n C1D H1D NDP sing 310 n n N1N C2N NDP sing 311 n n N1N C6N NDP sing 312 n n C2N C3N NDP doub 313 n n C2N H2N NDP sing 314 n n C3N C7N NDP sing 315 n n C3N C4N NDP sing 316 n n C7N O7N NDP doub 317 n n C7N N7N NDP sing 318 n n N7N H71N NDP sing 319 n n N7N H72N NDP sing 320 n n C4N C5N NDP sing 321 n n C4N H41N NDP sing 322 n n C4N H42N NDP sing 323 n n C5N C6N NDP doub 324 n n C5N H5N NDP sing 325 n n C6N H6N NDP sing 326 n n P2B O1X NDP doub 327 n n P2B O2X NDP sing 328 n n P2B O3X NDP sing 329 n n O2X HOP2 NDP sing 330 n n O3X HOP3 NDP sing 331 n n # _atom_sites.entry_id 1DG8 _atom_sites.fract_transf_matrix[1][1] 0.016562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 160 1 NDP NDP . C 3 GOL A 1 161 1 GOL GOL . D 3 GOL A 1 162 2 GOL GOL . E 3 GOL A 1 163 3 GOL GOL . F 3 GOL A 1 164 4 GOL GOL . G 3 GOL A 1 165 5 GOL GOL . H 4 HOH A 1 166 1 HOH WAT . H 4 HOH A 2 167 2 HOH WAT . H 4 HOH A 3 168 3 HOH WAT . H 4 HOH A 4 169 4 HOH WAT . H 4 HOH A 5 170 5 HOH WAT . H 4 HOH A 6 171 6 HOH WAT . H 4 HOH A 7 172 7 HOH WAT . H 4 HOH A 8 173 8 HOH WAT . H 4 HOH A 9 174 9 HOH WAT . H 4 HOH A 10 175 10 HOH WAT . H 4 HOH A 11 176 11 HOH WAT . H 4 HOH A 12 177 12 HOH WAT . H 4 HOH A 13 178 13 HOH WAT . H 4 HOH A 14 179 14 HOH WAT . H 4 HOH A 15 180 15 HOH WAT . H 4 HOH A 16 181 16 HOH WAT . H 4 HOH A 17 182 17 HOH WAT . H 4 HOH A 18 183 18 HOH WAT . H 4 HOH A 19 184 19 HOH WAT . H 4 HOH A 20 185 20 HOH WAT . H 4 HOH A 21 186 21 HOH WAT . H 4 HOH A 22 187 22 HOH WAT . H 4 HOH A 23 188 23 HOH WAT . H 4 HOH A 24 189 24 HOH WAT . H 4 HOH A 25 190 25 HOH WAT . H 4 HOH A 26 191 26 HOH WAT . H 4 HOH A 27 192 27 HOH WAT . H 4 HOH A 28 193 28 HOH WAT . H 4 HOH A 29 194 29 HOH WAT . H 4 HOH A 30 195 30 HOH WAT . H 4 HOH A 31 196 31 HOH WAT . H 4 HOH A 32 197 32 HOH WAT . H 4 HOH A 33 198 33 HOH WAT . H 4 HOH A 34 199 34 HOH WAT . H 4 HOH A 35 200 35 HOH WAT . H 4 HOH A 36 201 36 HOH WAT . H 4 HOH A 37 202 37 HOH WAT . H 4 HOH A 38 203 38 HOH WAT . H 4 HOH A 39 204 39 HOH WAT . H 4 HOH A 40 205 40 HOH WAT . H 4 HOH A 41 206 41 HOH WAT . H 4 HOH A 42 207 42 HOH WAT . H 4 HOH A 43 208 43 HOH WAT . H 4 HOH A 44 209 44 HOH WAT . H 4 HOH A 45 210 45 HOH WAT . H 4 HOH A 46 211 46 HOH WAT . H 4 HOH A 47 212 47 HOH WAT . H 4 HOH A 48 213 48 HOH WAT . H 4 HOH A 49 214 49 HOH WAT . H 4 HOH A 50 215 50 HOH WAT . H 4 HOH A 51 216 51 HOH WAT . H 4 HOH A 52 217 52 HOH WAT . H 4 HOH A 53 218 53 HOH WAT . H 4 HOH A 54 219 54 HOH WAT . H 4 HOH A 55 220 55 HOH WAT . H 4 HOH A 56 221 56 HOH WAT . H 4 HOH A 57 222 57 HOH WAT . H 4 HOH A 58 223 58 HOH WAT . H 4 HOH A 59 224 59 HOH WAT . H 4 HOH A 60 225 60 HOH WAT . H 4 HOH A 61 226 61 HOH WAT . H 4 HOH A 62 227 62 HOH WAT . H 4 HOH A 63 228 63 HOH WAT . H 4 HOH A 64 229 64 HOH WAT . H 4 HOH A 65 230 65 HOH WAT . H 4 HOH A 66 231 66 HOH WAT . H 4 HOH A 67 232 67 HOH WAT . H 4 HOH A 68 233 68 HOH WAT . H 4 HOH A 69 234 69 HOH WAT . H 4 HOH A 70 235 70 HOH WAT . H 4 HOH A 71 236 71 HOH WAT . H 4 HOH A 72 237 72 HOH WAT . H 4 HOH A 73 238 73 HOH WAT . H 4 HOH A 74 239 74 HOH WAT . H 4 HOH A 75 240 75 HOH WAT . H 4 HOH A 76 241 76 HOH WAT . H 4 HOH A 77 242 77 HOH WAT . H 4 HOH A 78 243 78 HOH WAT . H 4 HOH A 79 244 79 HOH WAT . H 4 HOH A 80 245 80 HOH WAT . H 4 HOH A 81 246 81 HOH WAT . H 4 HOH A 82 247 82 HOH WAT . H 4 HOH A 83 248 83 HOH WAT . H 4 HOH A 84 249 84 HOH WAT . H 4 HOH A 85 250 85 HOH WAT . H 4 HOH A 86 251 86 HOH WAT . H 4 HOH A 87 252 87 HOH WAT . H 4 HOH A 88 253 88 HOH WAT . H 4 HOH A 89 254 89 HOH WAT . H 4 HOH A 90 255 90 HOH WAT . H 4 HOH A 91 256 91 HOH WAT . H 4 HOH A 92 257 92 HOH WAT . H 4 HOH A 93 258 93 HOH WAT . H 4 HOH A 94 259 94 HOH WAT . H 4 HOH A 95 260 95 HOH WAT . H 4 HOH A 96 261 96 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 11.662 16.762 17.28 1 20.19 ? PA NDP 160 A 1 HETATM 2 O O1A NDP . . . B 2 11.923 15.982 16.037 1 18.27 ? O1A NDP 160 A 1 HETATM 3 O O2A NDP . . . B 2 10.519 17.71 17.131 1 22.67 ? O2A NDP 160 A 1 HETATM 4 O O5B NDP . . . B 2 11.33 15.808 18.496 1 21.84 ? O5B NDP 160 A 1 HETATM 5 C C5B NDP . . . B 2 12.304 14.809 18.896 1 22.84 ? C5B NDP 160 A 1 HETATM 6 C C4B NDP . . . B 2 11.476 14.02 19.947 1 24.81 ? C4B NDP 160 A 1 HETATM 7 O O4B NDP . . . B 2 10.573 13.159 19.214 1 22.06 ? O4B NDP 160 A 1 HETATM 8 C C3B NDP . . . B 2 12.317 13.071 20.827 1 26 ? C3B NDP 160 A 1 HETATM 9 O O3B NDP . . . B 2 12.871 13.853 21.864 1 23.86 ? O3B NDP 160 A 1 HETATM 10 C C2B NDP . . . B 2 11.186 12.044 21.2 1 26.82 ? C2B NDP 160 A 1 HETATM 11 O O2B NDP . . . B 2 10.283 12.456 22.187 1 30.03 ? O2B NDP 160 A 1 HETATM 12 C C1B NDP . . . B 2 10.5 11.902 19.9 1 25.79 ? C1B NDP 160 A 1 HETATM 13 N N9A NDP . . . B 2 11.072 10.918 19.042 1 26.12 ? N9A NDP 160 A 1 HETATM 14 C C8A NDP . . . B 2 12.058 11.078 18.108 1 25.87 ? C8A NDP 160 A 1 HETATM 15 N N7A NDP . . . B 2 12.316 9.973 17.442 1 26.6 ? N7A NDP 160 A 1 HETATM 16 C C5A NDP . . . B 2 11.438 9.063 17.977 1 26.56 ? C5A NDP 160 A 1 HETATM 17 C C6A NDP . . . B 2 11.219 7.687 17.674 1 28.28 ? C6A NDP 160 A 1 HETATM 18 N N6A NDP . . . B 2 11.944 7.086 16.704 1 29.18 ? N6A NDP 160 A 1 HETATM 19 N N1A NDP . . . B 2 10.261 7.035 18.404 1 27.07 ? N1A NDP 160 A 1 HETATM 20 C C2A NDP . . . B 2 9.578 7.74 19.379 1 24.92 ? C2A NDP 160 A 1 HETATM 21 N N3A NDP . . . B 2 9.714 8.993 19.722 1 25.68 ? N3A NDP 160 A 1 HETATM 22 C C4A NDP . . . B 2 10.667 9.608 18.957 1 26.43 ? C4A NDP 160 A 1 HETATM 23 O O3 NDP . . . B 2 12.894 17.5 17.741 1 19.6 ? O3 NDP 160 A 1 HETATM 24 P PN NDP . . . B 2 14.11 18.344 17.221 1 19.96 ? PN NDP 160 A 1 HETATM 25 O O1N NDP . . . B 2 14.949 18.771 18.361 1 19.09 ? O1N NDP 160 A 1 HETATM 26 O O2N NDP . . . B 2 14.88 17.612 16.18 1 18.8 ? O2N NDP 160 A 1 HETATM 27 O O5D NDP . . . B 2 13.386 19.603 16.483 1 20.23 ? O5D NDP 160 A 1 HETATM 28 C C5D NDP . . . B 2 12.778 20.602 17.321 1 20.98 ? C5D NDP 160 A 1 HETATM 29 C C4D NDP . . . B 2 13.233 21.915 16.684 1 24.37 ? C4D NDP 160 A 1 HETATM 30 O O4D NDP . . . B 2 12.703 21.996 15.326 1 23.91 ? O4D NDP 160 A 1 HETATM 31 C C3D NDP . . . B 2 12.718 23.145 17.439 1 25.28 ? C3D NDP 160 A 1 HETATM 32 O O3D NDP . . . B 2 13.836 24.019 17.558 1 23.46 ? O3D NDP 160 A 1 HETATM 33 C C2D NDP . . . B 2 11.566 23.608 16.492 1 26.39 ? C2D NDP 160 A 1 HETATM 34 O O2D NDP . . . B 2 11.258 24.996 16.683 1 29.41 ? O2D NDP 160 A 1 HETATM 35 C C1D NDP . . . B 2 12.137 23.282 15.109 1 25 ? C1D NDP 160 A 1 HETATM 36 N N1N NDP . . . B 2 11.094 23.162 14.035 1 22.33 ? N1N NDP 160 A 1 HETATM 37 C C2N NDP . . . B 2 11.342 23.921 12.868 1 20.71 ? C2N NDP 160 A 1 HETATM 38 C C3N NDP . . . B 2 10.416 23.824 11.854 1 17.78 ? C3N NDP 160 A 1 HETATM 39 C C7N NDP . . . B 2 10.713 24.671 10.556 1 16.73 ? C7N NDP 160 A 1 HETATM 40 O O7N NDP . . . B 2 10.02 24.455 9.576 1 16.02 ? O7N NDP 160 A 1 HETATM 41 N N7N NDP . . . B 2 11.738 25.591 10.626 1 14.48 ? N7N NDP 160 A 1 HETATM 42 C C4N NDP . . . B 2 9.23 23.026 11.899 1 19.51 ? C4N NDP 160 A 1 HETATM 43 C C5N NDP . . . B 2 9.113 22.315 13.144 1 21.09 ? C5N NDP 160 A 1 HETATM 44 C C6N NDP . . . B 2 9.978 22.354 14.182 1 21.75 ? C6N NDP 160 A 1 HETATM 45 P P2B NDP . . . B 2 10.708 12.145 23.799 1 31.61 ? P2B NDP 160 A 1 HETATM 46 O O1X NDP . . . B 2 11.949 12.858 24.015 1 28.85 ? O1X NDP 160 A 1 HETATM 47 O O2X NDP . . . B 2 9.461 12.753 24.399 1 29.99 ? O2X NDP 160 A 1 HETATM 48 O O3X NDP . . . B 2 10.792 10.655 23.817 1 28.51 ? O3X NDP 160 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #