data_1DG8 # _model_server_result.job_id E0XKa28sdR2nTEhNZB6jrQ _model_server_result.datetime_utc '2024-10-11 21:55:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":164}' # _entry.id 1DG8 # _exptl.entry_id 1DG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DG8 _cell.length_a 60.38 _cell.length_b 60.38 _cell.length_c 58.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1DG8 _atom_sites.fract_transf_matrix[1][1] 0.016562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 160 1 NDP NDP . C 3 GOL A 1 161 1 GOL GOL . D 3 GOL A 1 162 2 GOL GOL . E 3 GOL A 1 163 3 GOL GOL . F 3 GOL A 1 164 4 GOL GOL . G 3 GOL A 1 165 5 GOL GOL . H 4 HOH A 1 166 1 HOH WAT . H 4 HOH A 2 167 2 HOH WAT . H 4 HOH A 3 168 3 HOH WAT . H 4 HOH A 4 169 4 HOH WAT . H 4 HOH A 5 170 5 HOH WAT . H 4 HOH A 6 171 6 HOH WAT . H 4 HOH A 7 172 7 HOH WAT . H 4 HOH A 8 173 8 HOH WAT . H 4 HOH A 9 174 9 HOH WAT . H 4 HOH A 10 175 10 HOH WAT . H 4 HOH A 11 176 11 HOH WAT . H 4 HOH A 12 177 12 HOH WAT . H 4 HOH A 13 178 13 HOH WAT . H 4 HOH A 14 179 14 HOH WAT . H 4 HOH A 15 180 15 HOH WAT . H 4 HOH A 16 181 16 HOH WAT . H 4 HOH A 17 182 17 HOH WAT . H 4 HOH A 18 183 18 HOH WAT . H 4 HOH A 19 184 19 HOH WAT . H 4 HOH A 20 185 20 HOH WAT . H 4 HOH A 21 186 21 HOH WAT . H 4 HOH A 22 187 22 HOH WAT . H 4 HOH A 23 188 23 HOH WAT . H 4 HOH A 24 189 24 HOH WAT . H 4 HOH A 25 190 25 HOH WAT . H 4 HOH A 26 191 26 HOH WAT . H 4 HOH A 27 192 27 HOH WAT . H 4 HOH A 28 193 28 HOH WAT . H 4 HOH A 29 194 29 HOH WAT . H 4 HOH A 30 195 30 HOH WAT . H 4 HOH A 31 196 31 HOH WAT . H 4 HOH A 32 197 32 HOH WAT . H 4 HOH A 33 198 33 HOH WAT . H 4 HOH A 34 199 34 HOH WAT . H 4 HOH A 35 200 35 HOH WAT . H 4 HOH A 36 201 36 HOH WAT . H 4 HOH A 37 202 37 HOH WAT . H 4 HOH A 38 203 38 HOH WAT . H 4 HOH A 39 204 39 HOH WAT . H 4 HOH A 40 205 40 HOH WAT . H 4 HOH A 41 206 41 HOH WAT . H 4 HOH A 42 207 42 HOH WAT . H 4 HOH A 43 208 43 HOH WAT . H 4 HOH A 44 209 44 HOH WAT . H 4 HOH A 45 210 45 HOH WAT . H 4 HOH A 46 211 46 HOH WAT . H 4 HOH A 47 212 47 HOH WAT . H 4 HOH A 48 213 48 HOH WAT . H 4 HOH A 49 214 49 HOH WAT . H 4 HOH A 50 215 50 HOH WAT . H 4 HOH A 51 216 51 HOH WAT . H 4 HOH A 52 217 52 HOH WAT . H 4 HOH A 53 218 53 HOH WAT . H 4 HOH A 54 219 54 HOH WAT . H 4 HOH A 55 220 55 HOH WAT . H 4 HOH A 56 221 56 HOH WAT . H 4 HOH A 57 222 57 HOH WAT . H 4 HOH A 58 223 58 HOH WAT . H 4 HOH A 59 224 59 HOH WAT . H 4 HOH A 60 225 60 HOH WAT . H 4 HOH A 61 226 61 HOH WAT . H 4 HOH A 62 227 62 HOH WAT . H 4 HOH A 63 228 63 HOH WAT . H 4 HOH A 64 229 64 HOH WAT . H 4 HOH A 65 230 65 HOH WAT . H 4 HOH A 66 231 66 HOH WAT . H 4 HOH A 67 232 67 HOH WAT . H 4 HOH A 68 233 68 HOH WAT . H 4 HOH A 69 234 69 HOH WAT . H 4 HOH A 70 235 70 HOH WAT . H 4 HOH A 71 236 71 HOH WAT . H 4 HOH A 72 237 72 HOH WAT . H 4 HOH A 73 238 73 HOH WAT . H 4 HOH A 74 239 74 HOH WAT . H 4 HOH A 75 240 75 HOH WAT . H 4 HOH A 76 241 76 HOH WAT . H 4 HOH A 77 242 77 HOH WAT . H 4 HOH A 78 243 78 HOH WAT . H 4 HOH A 79 244 79 HOH WAT . H 4 HOH A 80 245 80 HOH WAT . H 4 HOH A 81 246 81 HOH WAT . H 4 HOH A 82 247 82 HOH WAT . H 4 HOH A 83 248 83 HOH WAT . H 4 HOH A 84 249 84 HOH WAT . H 4 HOH A 85 250 85 HOH WAT . H 4 HOH A 86 251 86 HOH WAT . H 4 HOH A 87 252 87 HOH WAT . H 4 HOH A 88 253 88 HOH WAT . H 4 HOH A 89 254 89 HOH WAT . H 4 HOH A 90 255 90 HOH WAT . H 4 HOH A 91 256 91 HOH WAT . H 4 HOH A 92 257 92 HOH WAT . H 4 HOH A 93 258 93 HOH WAT . H 4 HOH A 94 259 94 HOH WAT . H 4 HOH A 95 260 95 HOH WAT . H 4 HOH A 96 261 96 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 19.598 19.287 21.839 1 49.79 ? C1 GOL 164 A 1 HETATM 2 O O1 GOL . . . F 3 18.883 19.679 23.049 1 50.12 ? O1 GOL 164 A 1 HETATM 3 C C2 GOL . . . F 3 20.733 20.329 21.541 1 49.54 ? C2 GOL 164 A 1 HETATM 4 O O2 GOL . . . F 3 20.399 21.528 20.844 1 49.77 ? O2 GOL 164 A 1 HETATM 5 C C3 GOL . . . F 3 22.189 19.827 21.334 1 47.54 ? C3 GOL 164 A 1 HETATM 6 O O3 GOL . . . F 3 23.154 20.715 21.882 1 43.17 ? O3 GOL 164 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #