data_1DGE
#
_model_server_result.job_id            muGe4z6EIKigZsNv2_48pw 
_model_server_result.datetime_utc      '2024-10-11 08:23:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":435}' 
#
_entry.id    1DGE 
#
_exptl.entry_id    1DGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              85.468 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'RUBIDIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DGE 
_cell.length_a            153.5 
_cell.length_b            153.5 
_cell.length_c            86.6 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,2,3,4 
A,B,C,D,E,F 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 76.75 132.934899 0 
3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 28.866667 
4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 76.75 132.934899 28.866667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 271 A LYS 272 1_555 D C4A PLP . A PLP 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? 
metalc ? metalc1 B RB RB . A RB 435 1_555 A N PRO 99 A PRO 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.64 ? 
metalc ? metalc2 B RB RB . A RB 435 1_555 A O ALA 94 A ALA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc3 B RB RB . A RB 435 1_555 A O LEU 101 A LEU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc4 B RB RB . A RB 435 1_555 F O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? 
metalc ? metalc5 B RB RB . A RB 435 1_555 A OG1 THR 97 A THR 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.409 ? 
metalc ? metalc6 B RB RB . A RB 435 1_555 A O PRO 98 A PRO 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc7 B RB RB . A RB 435 1_555 A N LEU 101 A LEU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.921 ? 
metalc ? metalc8 B RB RB . A RB 435 1_555 A O THR 97 A THR 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? 
metalc ? metalc9 C RB RB . A RB 436 1_555 F O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? 
metalc ? metalc10 C RB RB . A RB 436 1_555 A OD2 ASP 306 A ASP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.925 ? 
metalc ? metalc11 C RB RB . A RB 436 1_555 A O LEU 77 A LEU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc12 C RB RB . A RB 436 1_555 A N SER 79 A SER 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.829 ? 
metalc ? metalc13 C RB RB . A RB 436 1_555 A OG SER 79 A SER 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc14 C RB RB . A RB 436 1_555 A O THR 302 A THR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc15 C RB RB . A RB 436 1_555 A OD1 ASP 306 A ASP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc16 C RB RB . A RB 436 1_555 A O VAL 304 A VAL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
#
_chem_comp.formula           'Rb 1' 
_chem_comp.formula_weight    85.468 
_chem_comp.id                RB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'RUBIDIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DGE 
_atom_sites.fract_transf_matrix[1][1]    0.006515 
_atom_sites.fract_transf_matrix[1][2]    0.003761 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RB A 1 435 435 RB RB . 
C 2 RB A 1 436 436 RB RB . 
D 3 PLP A 1 437 272 PLP PLP . 
E 4 MES A 1 434 434 MES MES . 
F 5 HOH A 1 501 501 HOH HOH . 
F 5 HOH A 2 502 502 HOH HOH . 
F 5 HOH A 3 503 503 HOH HOH . 
F 5 HOH A 4 504 504 HOH HOH . 
F 5 HOH A 5 505 505 HOH HOH . 
F 5 HOH A 6 506 506 HOH HOH . 
F 5 HOH A 7 507 507 HOH HOH . 
F 5 HOH A 8 508 508 HOH HOH . 
F 5 HOH A 9 509 509 HOH HOH . 
F 5 HOH A 10 510 510 HOH HOH . 
F 5 HOH A 11 511 511 HOH HOH . 
F 5 HOH A 12 512 512 HOH HOH . 
F 5 HOH A 13 513 513 HOH HOH . 
F 5 HOH A 14 514 514 HOH HOH . 
F 5 HOH A 15 515 515 HOH HOH . 
F 5 HOH A 16 516 516 HOH HOH . 
F 5 HOH A 17 517 517 HOH HOH . 
F 5 HOH A 18 518 518 HOH HOH . 
F 5 HOH A 19 519 519 HOH HOH . 
F 5 HOH A 20 520 520 HOH HOH . 
F 5 HOH A 21 521 521 HOH HOH . 
F 5 HOH A 22 522 522 HOH HOH . 
F 5 HOH A 23 523 523 HOH HOH . 
F 5 HOH A 24 524 524 HOH HOH . 
F 5 HOH A 25 525 525 HOH HOH . 
F 5 HOH A 26 526 526 HOH HOH . 
F 5 HOH A 27 527 527 HOH HOH . 
F 5 HOH A 28 528 528 HOH HOH . 
F 5 HOH A 29 529 529 HOH HOH . 
F 5 HOH A 30 530 530 HOH HOH . 
F 5 HOH A 31 531 531 HOH HOH . 
F 5 HOH A 32 532 532 HOH HOH . 
F 5 HOH A 33 533 533 HOH HOH . 
F 5 HOH A 34 534 534 HOH HOH . 
F 5 HOH A 35 535 535 HOH HOH . 
F 5 HOH A 36 536 536 HOH HOH . 
F 5 HOH A 37 537 537 HOH HOH . 
F 5 HOH A 38 538 538 HOH HOH . 
F 5 HOH A 39 539 539 HOH HOH . 
F 5 HOH A 40 540 540 HOH HOH . 
F 5 HOH A 41 541 541 HOH HOH . 
F 5 HOH A 42 542 542 HOH HOH . 
F 5 HOH A 43 543 543 HOH HOH . 
F 5 HOH A 44 544 544 HOH HOH . 
F 5 HOH A 45 545 545 HOH HOH . 
F 5 HOH A 46 546 546 HOH HOH . 
F 5 HOH A 47 547 547 HOH HOH . 
F 5 HOH A 48 548 548 HOH HOH . 
F 5 HOH A 49 549 549 HOH HOH . 
F 5 HOH A 50 550 550 HOH HOH . 
F 5 HOH A 51 551 551 HOH HOH . 
F 5 HOH A 52 552 552 HOH HOH . 
F 5 HOH A 53 553 553 HOH HOH . 
F 5 HOH A 54 554 554 HOH HOH . 
F 5 HOH A 55 555 555 HOH HOH . 
F 5 HOH A 56 556 556 HOH HOH . 
F 5 HOH A 57 557 557 HOH HOH . 
F 5 HOH A 58 558 558 HOH HOH . 
F 5 HOH A 59 559 559 HOH HOH . 
F 5 HOH A 60 560 560 HOH HOH . 
F 5 HOH A 61 561 561 HOH HOH . 
F 5 HOH A 62 562 562 HOH HOH . 
F 5 HOH A 63 563 563 HOH HOH . 
F 5 HOH A 64 564 564 HOH HOH . 
F 5 HOH A 65 565 565 HOH HOH . 
F 5 HOH A 66 566 566 HOH HOH . 
F 5 HOH A 67 567 567 HOH HOH . 
F 5 HOH A 68 568 568 HOH HOH . 
F 5 HOH A 69 569 569 HOH HOH . 
F 5 HOH A 70 570 570 HOH HOH . 
F 5 HOH A 71 571 571 HOH HOH . 
F 5 HOH A 72 572 572 HOH HOH . 
F 5 HOH A 73 573 573 HOH HOH . 
F 5 HOH A 74 574 574 HOH HOH . 
F 5 HOH A 75 575 575 HOH HOH . 
F 5 HOH A 76 576 576 HOH HOH . 
F 5 HOH A 77 577 577 HOH HOH . 
F 5 HOH A 78 578 578 HOH HOH . 
F 5 HOH A 79 579 579 HOH HOH . 
F 5 HOH A 80 580 580 HOH HOH . 
F 5 HOH A 81 581 581 HOH HOH . 
F 5 HOH A 82 582 582 HOH HOH . 
F 5 HOH A 83 583 583 HOH HOH . 
F 5 HOH A 84 584 584 HOH HOH . 
F 5 HOH A 85 585 585 HOH HOH . 
F 5 HOH A 86 586 586 HOH HOH . 
F 5 HOH A 87 587 587 HOH HOH . 
F 5 HOH A 88 588 588 HOH HOH . 
F 5 HOH A 89 589 589 HOH HOH . 
F 5 HOH A 90 590 590 HOH HOH . 
F 5 HOH A 91 591 591 HOH HOH . 
F 5 HOH A 92 592 592 HOH HOH . 
F 5 HOH A 93 593 593 HOH HOH . 
F 5 HOH A 94 594 594 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           RB 
_atom_site.label_atom_id         RB 
_atom_site.label_comp_id         RB 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               12.252 
_atom_site.Cartn_y               49.597 
_atom_site.Cartn_z               -6.563 
_atom_site.occupancy             0.57 
_atom_site.B_iso_or_equiv        24.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          RB 
_atom_site.auth_comp_id          RB 
_atom_site.auth_seq_id           435 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#