data_1DGJ # _model_server_result.job_id opTflyGyPuiI-djWpD-0qA _model_server_result.datetime_utc '2024-11-22 09:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":908}' # _entry.id 1DGJ # _exptl.entry_id 1DGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DGJ _cell.length_a 156.639 _cell.length_b 156.639 _cell.length_c 177.149 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 40 A CYS 40 1_555 C FE1 FES . A FES 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A SG CYS 45 A CYS 45 1_555 C FE1 FES . A FES 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A SG CYS 48 A CYS 48 1_555 C FE2 FES . A FES 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 A SG CYS 60 A CYS 60 1_555 C FE2 FES . A FES 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 A SG CYS 100 A CYS 100 1_555 B FE1 FES . A FES 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 A SG CYS 103 A CYS 103 1_555 B FE2 FES . A FES 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 A SG CYS 137 A CYS 137 1_555 B FE2 FES . A FES 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc8 A SG CYS 139 A CYS 139 1_555 B FE1 FES . A FES 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 D MO 2MO . A 2MO 910 1_555 F O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 D MO 2MO . A 2MO 910 1_555 E S8' MCN . A MCN 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc11 D MO 2MO . A 2MO 910 1_555 E S7' MCN . A MCN 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 85 n n FE1 S2 FES sing 86 n n FE2 S1 FES sing 87 n n FE2 S2 FES sing 88 n n # _atom_sites.entry_id 1DGJ _atom_sites.fract_transf_matrix[1][1] 0.006384 _atom_sites.fract_transf_matrix[1][2] 0.003686 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 908 908 FES FE2 . C 2 FES A 1 909 909 FES FE2 . D 3 2MO A 1 910 910 2MO 2MO . E 4 MCN A 1 914 914 MCN MCN . F 5 HOH A 1 912 912 HOH HOH . F 5 HOH A 2 1000 1000 HOH HOH . F 5 HOH A 3 1001 1001 HOH HOH . F 5 HOH A 4 1002 1002 HOH HOH . F 5 HOH A 5 1003 1003 HOH HOH . F 5 HOH A 6 1004 1004 HOH HOH . F 5 HOH A 7 1005 1005 HOH HOH . F 5 HOH A 8 1006 1006 HOH HOH . F 5 HOH A 9 1007 1007 HOH HOH . F 5 HOH A 10 1008 1008 HOH HOH . F 5 HOH A 11 1009 1009 HOH HOH . F 5 HOH A 12 1010 1010 HOH HOH . F 5 HOH A 13 1011 1011 HOH HOH . F 5 HOH A 14 1012 1012 HOH HOH . F 5 HOH A 15 1013 1013 HOH HOH . F 5 HOH A 16 1014 1014 HOH HOH . F 5 HOH A 17 1015 1015 HOH HOH . F 5 HOH A 18 1016 1016 HOH HOH . F 5 HOH A 19 1017 1017 HOH HOH . F 5 HOH A 20 1018 1018 HOH HOH . F 5 HOH A 21 1019 1019 HOH HOH . F 5 HOH A 22 1020 1020 HOH HOH . F 5 HOH A 23 1021 1021 HOH HOH . F 5 HOH A 24 1022 1022 HOH HOH . F 5 HOH A 25 1023 1023 HOH HOH . F 5 HOH A 26 1024 1024 HOH HOH . F 5 HOH A 27 1025 1025 HOH HOH . F 5 HOH A 28 1026 1026 HOH HOH . F 5 HOH A 29 1027 1027 HOH HOH . F 5 HOH A 30 1028 1028 HOH HOH . F 5 HOH A 31 1029 1029 HOH HOH . F 5 HOH A 32 1030 1030 HOH HOH . F 5 HOH A 33 1031 1031 HOH HOH . F 5 HOH A 34 1032 1032 HOH HOH . F 5 HOH A 35 1033 1033 HOH HOH . F 5 HOH A 36 1034 1034 HOH HOH . F 5 HOH A 37 1035 1035 HOH HOH . F 5 HOH A 38 1036 1036 HOH HOH . F 5 HOH A 39 1037 1037 HOH HOH . F 5 HOH A 40 1038 1038 HOH HOH . F 5 HOH A 41 1039 1039 HOH HOH . F 5 HOH A 42 1040 1040 HOH HOH . F 5 HOH A 43 1041 1041 HOH HOH . F 5 HOH A 44 1042 1042 HOH HOH . F 5 HOH A 45 1043 1043 HOH HOH . F 5 HOH A 46 1044 1044 HOH HOH . F 5 HOH A 47 1045 1045 HOH HOH . F 5 HOH A 48 1046 1046 HOH HOH . F 5 HOH A 49 1047 1047 HOH HOH . F 5 HOH A 50 1048 1048 HOH HOH . F 5 HOH A 51 1049 1049 HOH HOH . F 5 HOH A 52 1050 1050 HOH HOH . F 5 HOH A 53 1051 1051 HOH HOH . F 5 HOH A 54 1052 1052 HOH HOH . F 5 HOH A 55 1053 1053 HOH HOH . F 5 HOH A 56 1054 1054 HOH HOH . F 5 HOH A 57 1055 1055 HOH HOH . F 5 HOH A 58 1056 1056 HOH HOH . F 5 HOH A 59 1057 1057 HOH HOH . F 5 HOH A 60 1058 1058 HOH HOH . F 5 HOH A 61 1059 1059 HOH HOH . F 5 HOH A 62 1060 1060 HOH HOH . F 5 HOH A 63 1061 1061 HOH HOH . F 5 HOH A 64 1062 1062 HOH HOH . F 5 HOH A 65 1063 1063 HOH HOH . F 5 HOH A 66 1064 1064 HOH HOH . F 5 HOH A 67 1065 1065 HOH HOH . F 5 HOH A 68 1066 1066 HOH HOH . F 5 HOH A 69 1067 1067 HOH HOH . F 5 HOH A 70 1068 1068 HOH HOH . F 5 HOH A 71 1069 1069 HOH HOH . F 5 HOH A 72 1070 1070 HOH HOH . F 5 HOH A 73 1071 1071 HOH HOH . F 5 HOH A 74 1072 1072 HOH HOH . F 5 HOH A 75 1073 1073 HOH HOH . F 5 HOH A 76 1074 1074 HOH HOH . F 5 HOH A 77 1075 1075 HOH HOH . F 5 HOH A 78 1076 1076 HOH HOH . F 5 HOH A 79 1077 1077 HOH HOH . F 5 HOH A 80 1078 1078 HOH HOH . F 5 HOH A 81 1079 1079 HOH HOH . F 5 HOH A 82 1080 1080 HOH HOH . F 5 HOH A 83 1081 1081 HOH HOH . F 5 HOH A 84 1082 1082 HOH HOH . F 5 HOH A 85 1083 1083 HOH HOH . F 5 HOH A 86 1084 1084 HOH HOH . F 5 HOH A 87 1085 1085 HOH HOH . F 5 HOH A 88 1086 1086 HOH HOH . F 5 HOH A 89 1087 1087 HOH HOH . F 5 HOH A 90 1088 1088 HOH HOH . F 5 HOH A 91 1089 1089 HOH HOH . F 5 HOH A 92 1090 1090 HOH HOH . F 5 HOH A 93 1091 1091 HOH HOH . F 5 HOH A 94 1092 1092 HOH HOH . F 5 HOH A 95 1093 1093 HOH HOH . F 5 HOH A 96 1094 1094 HOH HOH . F 5 HOH A 97 1095 1095 HOH HOH . F 5 HOH A 98 1096 1096 HOH HOH . F 5 HOH A 99 1097 1097 HOH HOH . F 5 HOH A 100 1098 1098 HOH HOH . F 5 HOH A 101 1099 1099 HOH HOH . F 5 HOH A 102 1100 1100 HOH HOH . F 5 HOH A 103 1101 1101 HOH HOH . F 5 HOH A 104 1102 1102 HOH HOH . F 5 HOH A 105 1103 1103 HOH HOH . F 5 HOH A 106 1104 1104 HOH HOH . F 5 HOH A 107 1105 1105 HOH HOH . F 5 HOH A 108 1106 1106 HOH HOH . F 5 HOH A 109 1107 1107 HOH HOH . F 5 HOH A 110 1108 1108 HOH HOH . F 5 HOH A 111 1109 1109 HOH HOH . F 5 HOH A 112 1110 1110 HOH HOH . F 5 HOH A 113 1111 1111 HOH HOH . F 5 HOH A 114 1112 1112 HOH HOH . F 5 HOH A 115 1113 1113 HOH HOH . F 5 HOH A 116 1114 1114 HOH HOH . F 5 HOH A 117 1115 1115 HOH HOH . F 5 HOH A 118 1116 1116 HOH HOH . F 5 HOH A 119 1117 1117 HOH HOH . F 5 HOH A 120 1118 1118 HOH HOH . F 5 HOH A 121 1119 1119 HOH HOH . F 5 HOH A 122 1120 1120 HOH HOH . F 5 HOH A 123 1121 1121 HOH HOH . F 5 HOH A 124 1122 1122 HOH HOH . F 5 HOH A 125 1123 1123 HOH HOH . F 5 HOH A 126 1124 1124 HOH HOH . F 5 HOH A 127 1125 1125 HOH HOH . F 5 HOH A 128 1126 1126 HOH HOH . F 5 HOH A 129 1127 1127 HOH HOH . F 5 HOH A 130 1128 1128 HOH HOH . F 5 HOH A 131 1129 1129 HOH HOH . F 5 HOH A 132 1130 1130 HOH HOH . F 5 HOH A 133 1131 1131 HOH HOH . F 5 HOH A 134 1132 1132 HOH HOH . F 5 HOH A 135 1133 1133 HOH HOH . F 5 HOH A 136 1134 1134 HOH HOH . F 5 HOH A 137 1135 1135 HOH HOH . F 5 HOH A 138 1136 1136 HOH HOH . F 5 HOH A 139 1137 1137 HOH HOH . F 5 HOH A 140 1138 1138 HOH HOH . F 5 HOH A 141 1139 1139 HOH HOH . F 5 HOH A 142 1140 1140 HOH HOH . F 5 HOH A 143 1141 1141 HOH HOH . F 5 HOH A 144 1142 1142 HOH HOH . F 5 HOH A 145 1143 1143 HOH HOH . F 5 HOH A 146 1144 1144 HOH HOH . F 5 HOH A 147 1145 1145 HOH HOH . F 5 HOH A 148 1146 1146 HOH HOH . F 5 HOH A 149 1147 1147 HOH HOH . F 5 HOH A 150 1148 1148 HOH HOH . F 5 HOH A 151 1149 1149 HOH HOH . F 5 HOH A 152 1150 1150 HOH HOH . F 5 HOH A 153 1151 1151 HOH HOH . F 5 HOH A 154 1152 1152 HOH HOH . F 5 HOH A 155 1153 1153 HOH HOH . F 5 HOH A 156 1154 1154 HOH HOH . F 5 HOH A 157 1155 1155 HOH HOH . F 5 HOH A 158 1156 1156 HOH HOH . F 5 HOH A 159 1157 1157 HOH HOH . F 5 HOH A 160 1158 1158 HOH HOH . F 5 HOH A 161 1159 1159 HOH HOH . F 5 HOH A 162 1160 1160 HOH HOH . F 5 HOH A 163 1161 1161 HOH HOH . F 5 HOH A 164 1162 1162 HOH HOH . F 5 HOH A 165 1163 1163 HOH HOH . F 5 HOH A 166 1164 1164 HOH HOH . F 5 HOH A 167 1165 1165 HOH HOH . F 5 HOH A 168 1166 1166 HOH HOH . F 5 HOH A 169 1167 1167 HOH HOH . F 5 HOH A 170 1168 1168 HOH HOH . F 5 HOH A 171 1169 1169 HOH HOH . F 5 HOH A 172 1170 1170 HOH HOH . F 5 HOH A 173 1171 1171 HOH HOH . F 5 HOH A 174 1172 1172 HOH HOH . F 5 HOH A 175 1173 1173 HOH HOH . F 5 HOH A 176 1174 1174 HOH HOH . F 5 HOH A 177 1175 1175 HOH HOH . F 5 HOH A 178 1176 1176 HOH HOH . F 5 HOH A 179 1177 1177 HOH HOH . F 5 HOH A 180 1178 1178 HOH HOH . F 5 HOH A 181 1179 1179 HOH HOH . F 5 HOH A 182 1180 1180 HOH HOH . F 5 HOH A 183 1181 1181 HOH HOH . F 5 HOH A 184 1182 1182 HOH HOH . F 5 HOH A 185 1183 1183 HOH HOH . F 5 HOH A 186 1184 1184 HOH HOH . F 5 HOH A 187 1185 1185 HOH HOH . F 5 HOH A 188 1186 1186 HOH HOH . F 5 HOH A 189 1187 1187 HOH HOH . F 5 HOH A 190 1188 1188 HOH HOH . F 5 HOH A 191 1189 1189 HOH HOH . F 5 HOH A 192 1190 1190 HOH HOH . F 5 HOH A 193 1191 1191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . B 2 6.255 61.076 80.358 1 28.25 ? FE1 FES 908 A 1 HETATM 2 FE FE2 FES . . . B 2 7.924 61.155 82.465 1 31.94 ? FE2 FES 908 A 1 HETATM 3 S S1 FES . . . B 2 8.419 60.616 80.358 1 28.26 ? S1 FES 908 A 1 HETATM 4 S S2 FES . . . B 2 5.861 61.869 82.419 1 29.85 ? S2 FES 908 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #