data_1DGK # _model_server_result.job_id VXlizgW3K1d7sC_cA_HNsw _model_server_result.datetime_utc '2024-11-18 09:41:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":919}' # _entry.id 1DGK # _exptl.entry_id 1DGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DGK _cell.length_a 145.78 _cell.length_b 146.83 _cell.length_c 58.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 127 n n C1 O1 GLC sing 128 n n C1 O5 GLC sing 129 n n C1 H1 GLC sing 130 n n C2 C3 GLC sing 131 n n C2 O2 GLC sing 132 n n C2 H2 GLC sing 133 n n C3 C4 GLC sing 134 n n C3 O3 GLC sing 135 n n C3 H3 GLC sing 136 n n C4 C5 GLC sing 137 n n C4 O4 GLC sing 138 n n C4 H4 GLC sing 139 n n C5 C6 GLC sing 140 n n C5 O5 GLC sing 141 n n C5 H5 GLC sing 142 n n C6 O6 GLC sing 143 n n C6 H61 GLC sing 144 n n C6 H62 GLC sing 145 n n O1 HO1 GLC sing 146 n n O2 HO2 GLC sing 147 n n O3 HO3 GLC sing 148 n n O4 HO4 GLC sing 149 n n O6 HO6 GLC sing 150 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1DGK _atom_sites.fract_transf_matrix[1][1] 0.00686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC N 1 918 915 GLC GLC . C 2 GLC N 1 919 917 GLC GLC . D 3 PO4 N 1 920 916 PO4 PO4 . E 4 ADP N 1 921 918 ADP ADP . F 4 ADP N 1 922 919 ADP ADP . G 5 HOH N 1 923 1 HOH WAT . G 5 HOH N 2 924 2 HOH WAT . G 5 HOH N 3 925 3 HOH WAT . G 5 HOH N 4 926 4 HOH WAT . G 5 HOH N 5 927 5 HOH WAT . G 5 HOH N 6 928 6 HOH WAT . G 5 HOH N 7 929 7 HOH WAT . G 5 HOH N 8 930 8 HOH WAT . G 5 HOH N 9 931 9 HOH WAT . G 5 HOH N 10 932 10 HOH WAT . G 5 HOH N 11 933 11 HOH WAT . G 5 HOH N 12 934 12 HOH WAT . G 5 HOH N 13 935 13 HOH WAT . G 5 HOH N 14 936 14 HOH WAT . G 5 HOH N 15 937 15 HOH WAT . G 5 HOH N 16 938 16 HOH WAT . G 5 HOH N 17 939 17 HOH WAT . G 5 HOH N 18 940 18 HOH WAT . G 5 HOH N 19 941 19 HOH WAT . G 5 HOH N 20 942 20 HOH WAT . G 5 HOH N 21 943 21 HOH WAT . G 5 HOH N 22 944 22 HOH WAT . G 5 HOH N 23 945 23 HOH WAT . G 5 HOH N 24 946 24 HOH WAT . G 5 HOH N 25 947 25 HOH WAT . G 5 HOH N 26 948 26 HOH WAT . G 5 HOH N 27 949 27 HOH WAT . G 5 HOH N 28 950 28 HOH WAT . G 5 HOH N 29 951 29 HOH WAT . G 5 HOH N 30 952 30 HOH WAT . G 5 HOH N 31 953 31 HOH WAT . G 5 HOH N 32 954 32 HOH WAT . G 5 HOH N 33 955 33 HOH WAT . G 5 HOH N 34 956 34 HOH WAT . G 5 HOH N 35 957 35 HOH WAT . G 5 HOH N 36 958 36 HOH WAT . G 5 HOH N 37 959 37 HOH WAT . G 5 HOH N 38 960 38 HOH WAT . G 5 HOH N 39 961 39 HOH WAT . G 5 HOH N 40 962 40 HOH WAT . G 5 HOH N 41 963 41 HOH WAT . G 5 HOH N 42 964 42 HOH WAT . G 5 HOH N 43 965 43 HOH WAT . G 5 HOH N 44 966 44 HOH WAT . G 5 HOH N 45 967 45 HOH WAT . G 5 HOH N 46 968 46 HOH WAT . G 5 HOH N 47 969 47 HOH WAT . G 5 HOH N 48 970 48 HOH WAT . G 5 HOH N 49 971 49 HOH WAT . G 5 HOH N 50 972 50 HOH WAT . G 5 HOH N 51 973 51 HOH WAT . G 5 HOH N 52 974 52 HOH WAT . G 5 HOH N 53 975 53 HOH WAT . G 5 HOH N 54 976 54 HOH WAT . G 5 HOH N 55 977 55 HOH WAT . G 5 HOH N 56 978 56 HOH WAT . G 5 HOH N 57 979 57 HOH WAT . G 5 HOH N 58 980 58 HOH WAT . G 5 HOH N 59 981 59 HOH WAT . G 5 HOH N 60 982 60 HOH WAT . G 5 HOH N 61 983 61 HOH WAT . G 5 HOH N 62 984 62 HOH WAT . G 5 HOH N 63 985 63 HOH WAT . G 5 HOH N 64 986 64 HOH WAT . G 5 HOH N 65 987 65 HOH WAT . G 5 HOH N 66 988 66 HOH WAT . G 5 HOH N 67 989 67 HOH WAT . G 5 HOH N 68 990 68 HOH WAT . G 5 HOH N 69 991 69 HOH WAT . G 5 HOH N 70 992 70 HOH WAT . G 5 HOH N 71 993 71 HOH WAT . G 5 HOH N 72 994 72 HOH WAT . G 5 HOH N 73 995 73 HOH WAT . G 5 HOH N 74 996 74 HOH WAT . G 5 HOH N 75 997 75 HOH WAT . G 5 HOH N 76 998 76 HOH WAT . G 5 HOH N 77 999 77 HOH WAT . G 5 HOH N 78 1000 78 HOH WAT . G 5 HOH N 79 1001 79 HOH WAT . G 5 HOH N 80 1002 80 HOH WAT . G 5 HOH N 81 1003 81 HOH WAT . G 5 HOH N 82 1004 82 HOH WAT . G 5 HOH N 83 1005 83 HOH WAT . G 5 HOH N 84 1006 84 HOH WAT . G 5 HOH N 85 1007 85 HOH WAT . G 5 HOH N 86 1008 86 HOH WAT . G 5 HOH N 87 1009 87 HOH WAT . G 5 HOH N 88 1010 88 HOH WAT . G 5 HOH N 89 1011 89 HOH WAT . G 5 HOH N 90 1012 90 HOH WAT . G 5 HOH N 91 1013 91 HOH WAT . G 5 HOH N 92 1014 92 HOH WAT . G 5 HOH N 93 1015 93 HOH WAT . G 5 HOH N 94 1016 94 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . C 2 102.44 53.454 -8.952 1 34.46 ? C1 GLC 919 N 1 HETATM 2 C C2 GLC . . . C 2 103.833 53.648 -9.478 1 33.06 ? C2 GLC 919 N 1 HETATM 3 C C3 GLC . . . C 2 104.277 55.037 -9.045 1 33.93 ? C3 GLC 919 N 1 HETATM 4 C C4 GLC . . . C 2 103.31 56.088 -9.53 1 34.63 ? C4 GLC 919 N 1 HETATM 5 C C5 GLC . . . C 2 101.882 55.706 -9.14 1 33.57 ? C5 GLC 919 N 1 HETATM 6 C C6 GLC . . . C 2 100.933 56.698 -9.707 1 31.86 ? C6 GLC 919 N 1 HETATM 7 O O1 GLC . . . C 2 102.382 53.457 -7.593 1 37.07 ? O1 GLC 919 N 1 HETATM 8 O O2 GLC . . . C 2 104.837 52.928 -8.785 1 31.77 ? O2 GLC 919 N 1 HETATM 9 O O3 GLC . . . C 2 105.598 55.179 -9.538 1 33.64 ? O3 GLC 919 N 1 HETATM 10 O O4 GLC . . . C 2 103.49 57.334 -8.874 1 37.35 ? O4 GLC 919 N 1 HETATM 11 O O5 GLC . . . C 2 101.587 54.368 -9.622 1 33.12 ? O5 GLC 919 N 1 HETATM 12 O O6 GLC . . . C 2 101.073 56.842 -11.095 1 29.95 ? O6 GLC 919 N 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #